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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C3.87.v1.A...'
  2. Transcript 'Phmamm.CG.MTP2014.S6...'
  3. EST 'AHC0AAA232YP06_RM1'
  4. Transcript 'Haaura.CG.MTP2014.S2...'
  5. Transcript 'Harore.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S376.g10469.01.t

Possible name(s)

NFIA; NFIC; NFIX

Location

S376 [74,454 / 76,665]

Sequences

Amino acid sequence

Length: 568

>Harore.CG.MTP2014.S376.g10469.01.p
MSLISGDYLTNDSTLANNSLLLYSQTSQSIQTDDLNLSIGRIPLAEKISITGRRLSSSAT
VVPCTSVVPCKKEIYLPELINPGVALASAISYRTPNSQFYPPQQQAYPNTGTDPVNSHVF
QDPTNLAGYTSYPLGQNSFSLGLKAQHDNLKRSYSTGSSENSRFFPGTTHPSHGIDRWVR
TDPGIAFRDRGHCASVDDTVLSAAERRQRLRNQGEAVVADDIAAFALGSQHQQQYNQQNQ
QILNQHHHTQLLQNIVGSIGNFGASGNFVSPSTASLACPTGSGSTAANFSVAAVAAAAQR
YPQLLAGPAAAALAAGIGSSSNPRANLSDPVLEAATLSQFQHKQQGQGFSGARPVEEFVH
PSLHPYHRHHNNSGGITPNTAAAMLAYDTPPYSFCSIQDEFHPFIEALLPHVKSFAYTWF
NLQARKRKYFKKHEKRMSAEEERAVKEELLHEKPEVQQKWASRLLAKLRKDIRPEFREDF
VLSITGKKPVCCILSNPDQKGKIRRIDCLRQADKGQDLLERVHVPPCESCELLRESSSVV
NAFSFRYYEITLDSNATWQLGSACDIGE

Nucleotide sequence

Length: 1,707

>Harore.CG.MTP2014.S376.g10469.01.t
ATGAGCTTAATTTCTGGTGATTATTTGACCAACGATTCGACATTAGCAAACAACTCCCTG
CTTCTGTATTCTCAAACTTCGCAGTCAATTCAAACAGACGATTTAAACCTTAGTATTGGA
CGAATTCCATTGGCTGAAAAAATAAGCATTACCGGAAGAAGACTTTCGTCATCAGCTACT
GTGGTTCCATGCACATCTGTGGTTCCGTGCAAAAAAGAGATCTATTTACCAGAGTTGATA
AACCCAGGCGTAGCGCTGGCTTCAGCAATATCATACCGGACCCCAAATTCACAATTTTAC
CCACCCCAGCAACAGGCCTACCCCAACACAGGCACGGACCCGGTTAATAGCCACGTTTTT
CAGGACCCAACCAATTTAGCGGGGTATACATCCTACCCGCTGGGGCAAAACTCGTTTTCT
TTGGGTTTGAAAGCCCAACATGACAACTTGAAAAGAAGTTACAGTACCGGGAGCTCGGAG
AATTCAAGATTTTTTCCCGGAACAACGCATCCCTCTCACGGCATAGACCGCTGGGTTCGT
ACCGATCCTGGAATAGCATTCAGAGACCGTGGTCACTGCGCATCTGTGGACGACACTGTA
CTCAGTGCAGCAGAACGTCGACAGAGACTTCGTAATCAAGGTGAAGCAGTCGTGGCTGAC
GATATAGCAGCCTTCGCCCTGGGGTCACAACATCAACAACAATATAACCAGCAAAATCAA
CAGATCCTTAATCAGCACCATCACACTCAACTGCTACAAAACATCGTGGGTAGCATTGGC
AATTTTGGCGCCTCTGGGAACTTTGTTTCGCCTTCCACGGCGTCTCTAGCGTGCCCTACC
GGTAGTGGTTCAACGGCAGCGAATTTCAGCGTTGCAGCTGTGGCAGCGGCGGCGCAACGC
TATCCCCAGCTTTTAGCTGGACCGGCCGCTGCTGCTCTAGCTGCGGGGATAGGAAGCTCT
TCGAACCCGCGAGCGAACCTAAGCGATCCCGTTCTGGAGGCAGCTACGTTATCTCAGTTT
CAGCATAAACAGCAGGGGCAGGGTTTTTCAGGGGCTAGACCAGTCGAGGAGTTTGTTCAC
CCCTCTCTTCACCCCTACCATAGACATCATAATAATAGCGGGGGTATTACCCCTAATACG
GCCGCGGCAATGTTAGCCTATGACACGCCTCCTTATTCATTTTGTTCTATTCAGGATGAG
TTTCATCCGTTCATTGAAGCTCTTCTCCCACACGTGAAAAGCTTCGCTTATACTTGGTTC
AACCTACAAGCGAGAAAGAGAAAATATTTCAAAAAACACGAGAAACGAATGAGTGCTGAA
GAGGAGAGAGCCGTCAAAGAGGAACTCCTCCACGAGAAACCAGAAGTTCAACAAAAATGG
GCGTCGAGGCTTCTTGCCAAGCTGAGAAAAGACATCCGGCCCGAATTTCGTGAGGATTTC
GTTCTCTCCATAACGGGGAAGAAGCCGGTTTGCTGCATCCTGTCAAATCCTGATCAGAAA
GGAAAAATCAGAAGGATCGACTGTCTGAGACAAGCTGATAAGGGGCAGGACCTTCTTGAA
AGGGTTCACGTCCCACCCTGTGAGAGCTGTGAGCTCTTGAGAGAGAGTTCTAGTGTGGTC
AACGCATTTTCTTTTCGCTATTATGAAATCACGCTAGATTCCAACGCAACTTGGCAACTT
GGTTCTGCTTGTGATATCGGTGAATAG

InterProScan

PANTHER
CTF/NFI (IPR000647) - T[49-78] 7.3E-86 - T[280-291] 7.3E-86 - T[394-514] 7.3E-86
ProSiteProfiles
CTF/NFI_DNA-bd-dom (IPR020604) - T[390-568] 39.543
Pfam
CTF/NFI_DNA-bd_N (IPR019548) - T[396-435] 4.8E-27
ProSitePatterns
CTF/NFI_DNA-bd_CS (IPR019739) - T[425-436] .

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
NFIX_HUMAN 87.603 % 240 1.06E-72
NFIB_HUMAN 84.298 % 228 6.43E-69
NFIA_HUMAN 87.603 % 238 5.87E-72