- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S37.g13525.01.t
Possible name(s)
GPSM2; RAPSN; TTC28
Gene model
Location
S37 [377,535 / 383,814]
Amino acid sequence
Length: 473
>Harore.CG.MTP2014.S37.g13525.01.p
MQTTITFSMLSLKVNLLSVHCWWLIKMGQINSNNNSVPKDMKYAKIYNDTLRSIMDDGDR
TAIKKWEKEIERKIKDNKERWYVLGYAIRTFESWGRYRIVMELAVNQIETAQDIKTKSSQ
TDFKGSESLVSINTTLAESYLNLARANLSLSEFSKCTDYCNKSMSYIAKCRGANSEMTLR
ITGEIHLCRGSAYLRLGCFRKALEDLERSLTLATSQHNAVLESMACCALGRFYVSLKDYE
KATFFPLKAAEILNENDSTPSYRTMIQIHLAEAYRKVGKLPEAMACSEEAMKCAIETSDR
GSQAYCLLCFADIHRTRKDSIRARPRYESAGALMVEIGDRYGEVKVMVGKAKVDLKSKNY
AAALELYEGALKIAHSINAKMECLGIIGELAVLQQRLSNLEETRKCTVKYHELLDELDLY
CGACLKPIAEKHEQLEALPCSHVFHLQCVSELGLINTRACPNCRKLMSKPTFV
Nucleotide sequence
Length: 2,501
>Harore.CG.MTP2014.S37.g13525.01.t
ATGCAAACGACCATTACTTTCTCAATGTTATCTCTCAAAGTTAATTTGTTATCGGTTCAC
TGCTGGTGGTTGATTAAGATGGGCCAAATAAACTCAAACAACAACTCAGTACCAAAAGAT
ATGAAATATGCAAAAATATATAACGACACACTGCGAAGTATAATGGACGATGGTGATAGA
ACGGCTATAAAAAAGTGGGAAAAAGAAATCGAAAGGAAAATAAAAGACAACAAAGAAAGA
TGGTACGTATTGGGATACGCCATAAGAACTTTTGAAAGCTGGGGACGATACCGAATTGTG
ATGGAGTTAGCCGTGAATCAAATAGAAACGGCGCAGGATATTAAGACTAAGAGCAGTCAG
ACTGATTTCAAGGGATCCGAATCGCTTGTCAGCATTAACACAACTCTTGCGGAATCGTAT
TTGAACTTGGCTAGAGCCAATCTCTCGTTATCAGAATTCTCCAAATGTACGGATTACTGC
AACAAAAGTATGAGTTACATTGCTAAATGTCGAGGGGCCAACAGTGAGATGACATTGAGA
ATTACTGGAGAGATCCACCTGTGTCGCGGTAGTGCTTATCTCCGACTCGGATGTTTCAGA
AAAGCCCTGGAAGATTTAGAGCGCTCTTTGACTCTGGCAACAAGTCAGCATAACGCCGTT
TTGGAATCTATGGCTTGTTGCGCCCTTGGAAGGTTTTATGTAAGCCTGAAAGATTATGAA
AAGGCAACATTTTTCCCACTGAAAGCAGCGGAGATTCTAAACGAAAACGACAGTACTCCT
TCGTACAGAACGATGATTCAAATTCATTTAGCAGAAGCGTACAGAAAAGTTGGAAAGTTG
CCCGAAGCCATGGCATGTAGTGAAGAGGCGATGAAGTGCGCTATTGAAACTTCTGACAGG
GGATCGCAAGCTTACTGTTTGCTCTGTTTCGCCGACATTCACCGCACTAGGAAGGATTCT
ATACGTGCGCGTCCACGATACGAATCAGCTGGCGCCTTAATGGTCGAAATAGGAGATCGG
TATGGTGAAGTTAAGGTCATGGTTGGAAAAGCGAAAGTTGATCTGAAAAGCAAAAACTAC
GCAGCTGCTCTGGAATTGTACGAAGGAGCTTTGAAGATTGCTCACTCGATAAATGCAAAG
ATGGAGTGTCTCGGCATTATCGGTGAACTTGCAGTTTTGCAACAACGCTTGAGTAACTTA
GAGGAAACACGCAAATGCACTGTCAAGTATCACGAGCTGTTGGATGAGTTGGATTTGTAT
TGCGGCGCTTGCTTAAAACCGATCGCAGAAAAGCACGAACAGCTTGAGGCCTTGCCATGT
TCCCACGTTTTCCACTTGCAATGTGTGTCGGAATTGGGCTTGATAAATACCAGGGCCTGT
CCAAATTGTAGAAAACTGATGAGTAAGCCCACTTTCGTGTGAGGAATATGAACAATCTGC
CATTAGCGCAGACTCTGTAAACTGAAACAAACTGCTGCTGTAGGGATGGCAGGGATGAAT
GGAAGGTTAGTGATGATCAGCTCGTTCGGTTTCTTTTGGATATTTTTTGTTTTCTTTAAC
TGTTACAATTTCCTATCATTTCTTTTCTTTATCGATTCAACTAATGATCCATGAAAAAAT
ACTTTTGCCTTGGGTTTAATGTACAGGCACCTTTTCGCAAATGATATATAAATTATTCAA
ATTAATAGAGTAAAAAAATGCAATTCCACATATTTTCTTGAAGTGGACAGTAGTTTTGCC
TAGGATAGTGTCACACTACTACCTAAATTCTTAAAAAGCAGCAGTTAATTTATTGAATGG
TTGTAACCTTATCGTCCCTGTCAAATTTCTGACTTAAATTTAAGTAGTACGTACTTTTGT
GTGATGGCTTATATTGCACAACAATTTGAAGCGATTCTTTTTTTGTATACACGAAAGTGA
TACGAGTAAAAACAAAAGTGTAAAAAAATATTTTTCGTTCAGAGGACTACAACACATAGG
TTAGAGAAAAATGTGATAAACGTTGTTAATACTGGTTCTGTTGCGCGTATTTGTGCAATA
AACCGTTAAGGTCATTCGCATTCGAAATGCATTAAAACATTGTCTAGGCCCACTGGAGGA
ACAGTCAGTGTAATGAGTCCGTAGATGTGAACATTTTTTTATAACGCTATACGTCAGTTA
CTATTTATGCAATGTGATAATGTAACTACATGAAGTGTGGAGCATATGTGTTGATAGAGC
ATTTCATTTGTATCATTCTTCAATTCTACAACAAGTAATGCAGTCAGTATACGGGAAATG
AAATGTGCAAGATTTATGCGGAGTGAAACTTAAGCAACAGTGTACAATATCCCCTTGATT
GTGGGTGGCGACCAGTAGTGGGATTCAACTTGTTTGACGGGTCCTCGCGATACCGAAAAT
TACCAAAGTTCCTGAATTTTCCCTCGTCCAACGAATTATTACCTGCATTTTTTCATTTAA
CAATTCTATCTTAAAAAATAGGGCTGTAAAGTAGGAGAGAA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[20-257] 4.5E-16 - T[258-420] 2.4E-17 |
| Pfam |
Rapsyn_myristoylation/link_N (IPR019568) - T[58-114] 2.1E-7 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[135-299] 5.31E-16 - T[248-415] 4.03E-16 |
| SMART |
TPR_repeat (IPR019734) - T[137-170] 4.4 - T[183-216] 0.0098 - T[223-256] 12.0 - T[264-297] 71.0 - T[344-377] 93.0 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[183-216] 8.172 - T[223-256] 5.959 - T[264-297] 5.605 - T[344-377] 5.93 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[183-297] 10.069 - T[344-377] 6.532 |
| Pfam |
TPR_repeat (IPR019734) - T[225-249] 0.15 |
| SMART |
Znf_RING (IPR001841) - T[421-463] 0.0073 |
| Gene3D |
Znf_RING/FYVE/PHD (IPR013083) - T[421-465] 2.2E-8 |
| ProSiteProfiles |
Znf_RING (IPR001841) - T[421-464] 11.28 |
| Pfam |
Znf_RING (IPR001841) - T[421-464] 2.6E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RAPSN_HUMAN | 41.787 % | 298 | 2.94E-97 |