- Transcript 'KH2012:KH.C11.274.v1...' >
- Transcript 'Moocci.CG.ELv1_2.S40...' >
- Transcript 'KH2012:KH.C8.374.v1....' >
- Transcript 'Moocci.CG.ELv1_2.S18...' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S38.g06750.01.t
Possible name(s)
LHCGR; SORL1; TSHR
Gene model
Location
S38 [327,986 / 334,818]
Amino acid sequence
Length: 991
>Harore.CG.MTP2014.S38.g06750.01.p
MYSLKNYIDMQFLLLITVLLVSNTTSRQIYRLQTGNPSRANFKCSSGEVIPSAKFCDGRR
DCADGSDEITNESSITNRTLKYQRCTNSANLDNSYCLIPLTDICNGNVECKNFSKCDADC
TNYYTCQTSGLCVSRATICDGNSCSGCPEDHEWPNGVGFKCRRNGKECILPQQLVWDGVA
DCDGGIDLCVAPGQTPLKITSDFRQLNTSRIKDRCFQCLNDPTIIHKPQLCDGIIHCPDL
SDECLCENTSLQICNKVVKRAEIPSNSTCKAGDFKCNNGRCIPRTSVCNGISQCSQAEDE
DISFCDGSKPCTDSTAEDTKCRCETRVDTQNECYNVVASACNGIEECKLPLGASWAEPPG
YPPDECRAKCGTSTNFSCTVDAASRVGVPVSAIVCHKTTYSPPSTITIMSRNGTNITLTI
PGSMSVMEVYVENTNFCDGYKDCPDTAQDESNCPNRFNCSAQNGVLINIDRKKVCDGFID
CDFGEDETMELCDNSRFFCPSLGGRKVNIEKSLVCDGSIACDNRNDEQNCTNDGRFYCES
GKPLFVIERKVFDGRLDCSDWSDECPTNPSLKKNDILNSRYQMIGNTFLRVLVWIMGLAA
LFGNTAVIITVVNKQKRHHYKDVAANMLANRLYILNLAVADLLMGIYLLGLGIAGLTMEG
RYCAEDLNWRSGSTCVAFGVLSVLSSETSVATMILLTISRLYAIKNPLSSATQPKLYVVL
LGILAAWVFSIFIAFLPLSASLQHLFIYQASFNNNPFAGKLTMDLDSARTLIDKALDFDL
SPNISVAGMNQAVGDIKSASWRGLADISSKYTAHPEYYKTTAYFGYYSIDSVCIPKFFVT
TSDRAWRFSFTVTLFNFLAFVFVAASYGWIYYKSLRKKSIRQKDKSAANKRMGSIQRKIL
RLIITDLCCWMPICIIAFCKISGAYVGDTAYAVSAIVLLPINSALNPILYSDIPEKIYSY
CAKKKEEKVSRGRTNEGGSQETNLTTHKQSG
Nucleotide sequence
Length: 3,471
>Harore.CG.MTP2014.S38.g06750.01.t
GCTCTAGTTTATGTATTCGCTCAAAAACTACATAGATATGCAGTTCCTCTTACTCATCAC
TGTTCTACTGGTTTCAAATACAACCAGTCGGCAAATTTACAGGCTACAAACAGGAAACCC
AAGCAGAGCAAATTTCAAATGCAGCAGTGGAGAGGTGATACCATCAGCGAAATTCTGTGA
CGGAAGAAGGGACTGCGCCGATGGAAGCGATGAAATAACAAACGAAAGTTCAATTACTAA
TCGTACATTGAAATATCAAAGATGTACCAACTCGGCAAACCTCGACAACAGTTACTGCCT
CATTCCACTTACTGATATTTGCAATGGTAATGTTGAATGCAAAAACTTTTCCAAGTGCGA
CGCAGATTGCACAAACTATTATACCTGTCAGACAAGCGGACTATGTGTATCGCGTGCCAC
AATATGCGACGGTAATTCGTGCAGCGGATGTCCTGAAGACCACGAATGGCCAAATGGAGT
TGGTTTTAAATGTAGGAGAAATGGTAAAGAATGCATTTTGCCACAACAGCTGGTATGGGA
TGGTGTTGCTGACTGTGATGGTGGAATTGATTTATGTGTGGCACCGGGACAGACTCCGCT
TAAAATAACAAGCGATTTTCGTCAACTGAACACGTCAAGAATAAAAGACAGATGCTTTCA
ATGTTTAAACGATCCCACGATCATTCACAAACCGCAGCTGTGTGATGGAATAATTCACTG
TCCTGACCTCTCAGACGAATGTCTTTGCGAAAACACGTCTTTACAAATTTGTAACAAAGT
TGTAAAACGCGCCGAAATACCATCAAATTCTACTTGTAAGGCCGGTGACTTTAAATGCAA
TAATGGAAGGTGCATTCCTCGCACATCGGTATGCAATGGAATATCACAATGTTCACAAGC
AGAAGATGAAGATATTTCATTCTGCGATGGTTCAAAACCATGTACGGATTCAACAGCCGA
AGATACAAAATGCAGATGCGAGACAAGAGTGGACACCCAGAATGAATGTTACAATGTAGT
AGCGTCGGCTTGTAATGGAATAGAGGAATGTAAACTTCCTTTGGGCGCATCCTGGGCAGA
ACCTCCAGGATATCCGCCTGATGAATGCCGAGCTAAATGTGGAACATCTACAAATTTCAG
CTGTACGGTGGACGCGGCTAGTCGCGTAGGCGTTCCAGTCTCCGCCATTGTGTGCCACAA
AACCACTTACTCACCACCATCTACGATTACCATTATGAGTCGAAATGGAACCAACATTAC
TTTGACAATCCCGGGATCTATGTCCGTGATGGAAGTTTATGTTGAAAATACGAATTTTTG
TGATGGCTATAAGGACTGTCCTGATACCGCCCAAGATGAAAGCAATTGCCCGAACAGGTT
CAACTGTTCCGCGCAGAACGGAGTGTTGATCAACATCGACAGGAAGAAAGTTTGCGACGG
TTTTATCGACTGCGATTTCGGGGAAGACGAAACAATGGAATTGTGTGACAATAGTCGCTT
CTTCTGTCCATCTTTGGGGGGTAGAAAGGTAAACATCGAGAAAAGCCTTGTATGTGATGG
AAGTATAGCATGCGACAATCGAAACGACGAACAGAATTGTACTAACGATGGAAGATTTTA
CTGCGAAAGTGGGAAGCCACTCTTTGTTATCGAGAGAAAAGTGTTCGATGGGCGATTAGA
TTGTTCGGATTGGAGTGATGAATGTCCAACCAACCCTTCATTGAAAAAAAACGATATATT
GAATTCAAGATATCAAATGATTGGAAATACATTCCTTCGAGTGTTGGTTTGGATCATGGG
ACTTGCGGCGTTGTTTGGAAATACTGCTGTCATCATAACTGTTGTCAACAAACAAAAAAG
ACACCATTACAAAGATGTCGCTGCAAATATGTTGGCAAATCGTCTCTACATCTTGAATCT
TGCAGTTGCTGATTTATTGATGGGAATATACCTACTTGGTCTTGGCATTGCTGGATTAAC
AATGGAGGGTCGATACTGTGCTGAAGATCTAAACTGGAGATCAGGATCGACATGCGTTGC
TTTCGGAGTTTTATCTGTTTTATCAAGTGAAACCTCCGTAGCTACGATGATTCTGCTTAC
AATATCTCGACTATATGCCATTAAAAATCCTCTTTCTTCAGCAACTCAACCCAAGCTCTA
CGTAGTTCTTCTGGGTATATTGGCAGCATGGGTTTTCTCGATCTTTATCGCGTTTTTACC
ACTTTCTGCCAGTCTTCAGCATCTCTTCATTTACCAAGCGTCTTTCAACAACAACCCGTT
CGCAGGAAAATTGACAATGGACTTGGACAGCGCAAGGACGCTAATAGACAAGGCACTCGA
TTTTGACCTTTCCCCCAACATATCCGTAGCCGGCATGAATCAAGCTGTAGGTGACATAAA
GTCAGCATCTTGGAGAGGCCTTGCAGACATATCCTCTAAATACACTGCACATCCAGAGTA
TTATAAAACAACTGCTTATTTCGGATATTACAGTATTGACAGTGTGTGTATTCCGAAATT
TTTCGTCACAACCTCTGACCGTGCATGGAGATTCTCATTCACTGTCACTCTTTTCAATTT
TCTTGCTTTTGTATTCGTGGCTGCATCATATGGATGGATCTATTACAAGTCCTTAAGAAA
GAAATCTATCCGGCAAAAGGATAAGTCTGCGGCGAACAAACGAATGGGATCTATTCAACG
AAAGATTCTCCGTCTAATCATCACTGATCTCTGTTGCTGGATGCCGATCTGCATTATTGC
TTTTTGTAAAATCTCTGGAGCCTATGTTGGGGACACTGCTTACGCAGTATCAGCAATTGT
TCTTCTTCCGATCAACAGCGCCCTCAATCCAATTCTATACTCGGACATTCCCGAGAAGAT
TTACAGCTACTGTGCCAAGAAAAAAGAAGAGAAGGTATCACGCGGCAGAACAAATGAAGG
AGGCTCACAAGAAACCAACCTTACGACACACAAACAGTCTGGATAATCGTTTAGTGCTGG
CAAAATAATGAAACATTTTGAAACAGCAATGTTTCACATGTAAATATTAAATGGTCAGAT
ATCTGATCAGACGTGGCTGCAATGACTCATTTTCATTTAAAAATACATTTGTTTAGAGAG
TTAAGATTATACATAGCTAATAGACTATGGTATAACAATGGTTTAAGCTTTTATATGCAT
TGTAAAGTTATGATTATTGAGCTAGTTCTAGCCCCCTCGTTCGCACCACTGAATCTTGTG
GACTAATGGACCAACCATTCTAGGTGTATGATGCCTGGGCCGGTTTTAGGATCCATTCGA
CGACTTAGTACTATTATGCGTTGTTTGAAGGATATACTGATTCTCTCACACCACATTATA
TAAAACATACCACTAGTTTCCTGCATTCAGTCAAAATGCGTCAGGAGAAATGTGGTAATG
ATATTGTTCACCTCATTCACTACTTTCACTTCCCGATAGATATAATTCTTG
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[37-73] 3.5E-6 - T[154-191] 0.89 - T[211-248] 0.22 - T[268-307] 1.0E-7 - T[452-494] 0.0077 - T[529-567] 0.12 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[39-69] 1.83E-8 - T[266-300] 2.88E-8 |
| Pfam |
LDrepeatLR_classA_rpt (IPR002172) - T[39-68] 8.5E-9 - T[267-300] 8.3E-8 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[42-68] 5.48582E-7 - T[269-301] 9.04622E-7 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[42-86] 9.325 - T[268-306] 11.613 - T[452-493] 8.775 - T[491-531] 8.95 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[47-68] 9.8E-19 - T[279-300] 9.8E-19 - T[466-487] 9.8E-19 - T[506-527] 9.8E-19 - T[543-564] 9.8E-19 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[56-134] 6.8E-95 - T[229-981] 6.8E-95 |
| ProSitePatterns |
LDLR_class-A_CS (IPR023415) - T[281-305] . |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[603-739] 3.0E-11 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[603-950] 23.24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SORL_HUMAN | 26.916 % | 101 | 1.58E-21 |
| TSHR_HUMAN | 31.25 % | 89.7 | 3.07E-18 |
| LSHR_HUMAN | 29.412 % | 93.6 | 1.81E-19 |