- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S38.g15024.01.t
Possible name(s)
DDX10; DDX18; DDX55
Gene model
Location
S38 [76,383 / 80,924]
Amino acid sequence
Length: 763
>Harore.CG.MTP2014.S38.g15024.01.p
MDKDLTEVEKLAEWKDKKQRNRDNKLKNSKKIFVRRRKWRDEVDEIKELEKSYEEFDIAK
AEHFNDFPLSSKTKMGLEKAKYTTPTAIQRASFLPSVKGGDILGAAKTGSGKTLAFLLPV
LECLFRQRWTAIAGPGALIISPTRELAYQTFEVLKKVGLYHDFSAGLVIGGKDVKSEAAH
MCRTNILVCTPGRLLQHMDETSYFDASSLQILVLDEADRILDLGFKATVNAILENLPTDK
QTLLFSATQTKSVKDLARLSLKNPSYISVHEKSRTSTPSGLNQKYIVCKLEDKLNVLYSF
VKNHLKAKTIVFLTSCKQVQYIYAAFCKLRPGVPIMMLHGRMHQMKRMAVYEEFCRKQFA
LLFCTDVAARGLDIPAVDWVVQLDCPEDAETYIHRAGRTARNHGEGQALLLLLESEEEAM
VKQMQDRKVPISKTEINLEKITKINSRLESFCAAELELKEKAQRCFVSYIRSIFLMKNKS
VFSVQSLSFSEYAASLGLAVTPRDVVNTSSTLFTADDVSSDNEGDMFVVKRKDVFGLGSS
STVEEKTEISTAQKDDNKTLSKAAQAKKLLKKKYKYNQKILFDKDGELTEAWPPVDPNQY
KNITENIDEGDEDGIDIEKVKLEMKERDTSDRQRHRDKIRQKHQEKRRKDKELRRQLQAK
KEGRYYGKDNEEEVIAFLGSPDSSEVDESNPREFAKRDDVTVNSETIPLKRSSYHLRGDE
DEKESRSKRINVDGSATLSDLMNDAGLSLREEEDLALHFLKQN
Nucleotide sequence
Length: 2,690
>Harore.CG.MTP2014.S38.g15024.01.t
CTTAAGGTTTCGGATAGCTGAAACCATTCGTAAAATAATTAATAGACCATAATAACAGTC
GTTATCAATCTGAGCTATGGATAAAGATCTGACCGAAGTCGAGAAACTTGCAGAATGGAA
AGATAAGAAACAACGGAACAGAGATAACAAGCTGAAAAATTCCAAGAAAATCTTCGTAAG
AAGAAGAAAATGGCGGGATGAGGTTGATGAAATAAAAGAACTAGAGAAGAGTTACGAAGA
GTTCGACATTGCGAAGGCAGAGCATTTTAATGATTTTCCCCTCTCAAGTAAAACAAAAAT
GGGATTGGAAAAGGCTAAGTACACAACCCCAACAGCTATTCAGCGTGCTTCCTTTCTGCC
CTCTGTAAAAGGAGGAGATATACTGGGTGCAGCTAAAACCGGCTCTGGAAAAACATTGGC
ATTTTTGCTACCGGTTTTGGAATGTTTGTTTCGTCAACGATGGACAGCTATTGCTGGTCC
CGGTGCACTCATCATATCTCCCACACGAGAACTTGCTTATCAAACATTTGAAGTTTTAAA
AAAGGTGGGTCTTTATCATGATTTTTCTGCTGGTCTTGTGATTGGTGGAAAAGACGTTAA
GTCTGAAGCAGCCCACATGTGTCGGACGAACATATTGGTCTGCACGCCAGGAAGACTTCT
CCAACATATGGATGAAACATCATACTTCGATGCATCTAGTTTACAAATACTAGTGCTGGA
TGAAGCTGACCGAATTCTTGATCTGGGATTCAAAGCAACTGTTAATGCAATCTTGGAAAA
TCTTCCAACAGACAAACAAACTCTTCTGTTCTCTGCAACTCAAACAAAGTCAGTTAAAGA
CCTTGCTCGTCTTAGTCTCAAAAATCCATCCTACATATCAGTCCATGAAAAATCAAGAAC
CAGCACCCCATCAGGGCTCAATCAAAAGTATATTGTGTGCAAACTCGAAGACAAATTGAA
TGTGTTGTATTCATTCGTGAAGAATCATTTGAAAGCAAAAACAATTGTGTTTTTAACTTC
ATGTAAACAGGTACAATACATATACGCCGCCTTTTGCAAGCTGCGTCCTGGTGTCCCTAT
CATGATGCTGCATGGACGTATGCACCAGATGAAAAGAATGGCGGTATATGAAGAGTTTTG
CCGAAAACAGTTTGCTCTATTGTTCTGTACTGATGTTGCTGCGAGAGGTTTAGATATTCC
TGCTGTGGACTGGGTTGTGCAGCTCGATTGTCCGGAGGATGCAGAGACCTACATCCACCG
AGCTGGACGAACGGCTCGGAATCATGGAGAAGGACAAGCTTTGCTCCTTCTCTTAGAATC
GGAAGAAGAAGCAATGGTCAAGCAGATGCAGGATAGAAAGGTGCCGATATCAAAGACTGA
AATAAATTTAGAAAAAATAACAAAAATCAATTCAAGGTTAGAGTCATTTTGTGCCGCCGA
ACTAGAATTGAAAGAAAAAGCGCAAAGATGTTTTGTTTCCTACATTCGTTCTATCTTCCT
CATGAAGAATAAGTCTGTTTTTTCTGTACAATCATTGTCATTTTCTGAGTATGCTGCATC
ACTTGGCCTTGCAGTTACGCCTAGAGACGTTGTAAATACTTCGAGCACTCTCTTTACTGC
TGATGATGTATCCAGTGATAATGAAGGAGATATGTTTGTTGTGAAGAGAAAAGATGTATT
TGGTTTAGGCTCTTCCAGCACTGTCGAGGAAAAAACAGAAATTTCAACTGCACAAAAAGA
TGACAATAAGACATTATCAAAGGCAGCACAAGCAAAGAAATTATTGAAAAAGAAATACAA
GTACAATCAGAAGATATTGTTTGATAAAGATGGAGAATTAACGGAAGCTTGGCCTCCTGT
TGATCCGAATCAATACAAGAATATTACAGAGAATATTGACGAAGGTGACGAAGACGGAAT
TGATATTGAGAAAGTCAAGCTGGAAATGAAAGAACGTGACACATCAGATCGGCAAAGACA
CAGAGACAAGATCCGACAAAAGCACCAAGAAAAAAGAAGGAAAGATAAAGAATTAAGAAG
GCAACTGCAAGCAAAGAAAGAAGGCAGATATTACGGGAAAGATAATGAAGAAGAAGTTAT
TGCTTTTCTTGGTAGTCCTGATTCGAGTGAAGTGGATGAGTCAAACCCGAGAGAATTTGC
TAAAAGGGATGATGTGACTGTAAATTCCGAGACGATTCCCTTGAAACGTAGTAGCTATCA
TTTGAGAGGAGATGAGGATGAAAAGGAAAGTAGAAGCAAGAGAATAAATGTAGATGGCTC
CGCTACACTATCAGATCTCATGAATGATGCTGGCCTGTCATTACGTGAGGAGGAAGATTT
GGCTTTACATTTTTTGAAACAAAATTAAGTTTATTAGACATGGAAAGAATGTAGTAAATC
ATAATATACAATATACTTCGATATATCATGGGTCTCCGTACAAGTTAAGAAGTGTGGTTC
ATTTGAATTTAGCCAAATGTACTTTACTCCAATTGAGATCGTAAGCTATCTAATATATAT
TGATTCTAATTTGAAAGGGTGTTAGTCAGATTTGGCAAGTGGTCTTTGAGAGAAATTGTT
ATTTCAATTTCTGTGTTTAAAAGTGATGAGGGTAGGGGGTATAGGAGTTTCTGGCCTAAA
GATTCATCCTTTTGTGTTACCTTACATAAGTACATTATTATAAATTCGGA
| ProSiteProfiles |
RNA_helicase_DEAD_Q_motif (IPR014014) - T[62-90] 9.594 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[81-284] 2.0E-48 |
| Pfam |
DEAD/DEAH_box_helicase_dom (IPR011545) - T[86-256] 5.1E-44 |
| ProSiteProfiles |
Helicase_ATP-bd (IPR014001) - T[93-267] 30.025 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[134-424] 2.87E-65 |
| ProSitePatterns |
RNA-helicase_DEAD-box_CS (IPR000629) - T[213-221] . |
| CDD |
Helicase_C (IPR001650) - T[281-408] 9.76696E-34 |
| Pfam |
Helicase_C (IPR001650) - T[292-402] 4.7E-24 |
| ProSiteProfiles |
Helicase_C (IPR001650) - T[293-442] 20.622 |
| SMART |
Helicase_C (IPR001650) - T[321-403] 6.2E-27 |
| SMART |
DUF4217 (IPR025313) - T[443-506] 7.3E-19 |
| Pfam |
DUF4217 (IPR025313) - T[444-503] 2.0E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX10_HUMAN | 63.226 % | 632 | 0 |
| DDX18_HUMAN | 43.82 % | 371 | 2.13E-118 |
| DDX55_HUMAN | 37.844 % | 290 | 2.37E-88 |