- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Harore.CG.MTP2014.S2...' >
- Transcript 'Harore.CG.MTP2014.S3...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S399.g15143.01.t
Possible name(s)
SEMA6A; SEMA6C; SEMA6D
Gene model
Location
S399 [18,211 / 39,908]
Amino acid sequence
Length: 1,293
>Harore.CG.MTP2014.S399.g15143.01.p
MYTTRIVWFSMYLALLITECLGLFPDNTAPITRIRRDDLPYTVFSRDDQDNFRLRYVQDV
KEMTLADKRVIAVTARVVDFHDVHVPLFKVQEVLLALIHYYCLTKAYPDLFLATPSRYYC
ILYPASNCEQTGNNKSFEITVVIVNKMSPKRLQTSDCGNNLFILDKDKFSYNSSEDRFLP
MEIITWKSDKATEELCKMKGQSAVRYHEFTNSAVIRIPSSRGGAHEKFVKRVGFAYNIIW
ELISCKPQSQAENCHNYLRVLEATDDNSKLLLCGSNSYHPRYKYISIEEKQGHGKNSDVR
LVLGNETRSGTEICSFGPDQTGVSLFQDGSLYSATVTEFNGRTTVITRHFGTQTQLRVPK
FDTKFLNEPQFIKLADDGERILIYMNEMVYSDNGDVRMVAHVAQVCKNDKGGQHVLVRQW
TTFVKSRLNCSLNGFYFDQLQDVSDPVEVPIGDGSNTTETMVFATFTTPDRAVPGSAVCS
FRIKDIRKALFGRFKQDRTNGIGGSEGPSEDRHPASCPVDGFSDTELQFLKSHPLLEDQA
EGRLLTTHVGERWSTVSVDPRAGPKRDWTVIFVGTFKGEIIRYLYPSDGVRNTVMLSKHE
VYDPSECTLDNTHEEDKKKDMKLKRILIDPQQNTLTAAFRHCVISLPLRTCSVHKCEQSC
VASADPYCGWNNGHCVSYLSLSQNLPQNIFSNAMYPKTDVDSLCPEKKEDTKPSSGHVVP
AGNPDEKDNGVDGKSGIALSNTTDTATISNVDVSVGDKTDSPEAALSVASKPGYMEIHIG
VVIGAVLLALVVGFLLCCCCIRCCWRGEIEKSIDSDINDSTISLSLCKKTFNSIFSCLSP
EPKRHTITRDYESSTLMEPKKRHTSGDSRRSDDLPDGKMVKLNGTHNQRPISQGPRTSRL
NSSGSNGSQVMVPNGTVANYHSGRPQSMMTNSTSSMSTKPVSNLNVPANRPSYTRQHSGK
RSSDPVHNTDEYTNAPTLPADRKAARNSTPGGMGFYPASSPIRSDYPSFLDSSGVDDVVE
NTTNTLQGVQEVIAAEIQRRSQEVEPLENIPEEERPRHDSDDSGKGESPRNSLQNEEERA
NKITPMPRPQTLEFGQNRQRRHRLNSEPPNSTINMQVHPQYSRQPVMRSISVRGPATTVQ
PISIARGQRSGSFSSQPSTPIGQSPPKYMVHSSSIPQSSRSDHNMIYSTMPNNPNGRNRA
PPEAYRHGYDPHFVQNPSQYVRFDSQMENVHPNNMSMQEKYSSLPSRGRTKRNAQQQQQQ
LQQQQQQQQQQQQQQQQQPATVLRSEVTAGCTV
Nucleotide sequence
Length: 4,564
>Harore.CG.MTP2014.S399.g15143.01.t
CTTATGGGTTAGAGGGGCAATTTGAAATAATAACTGTTCCATATACTTCCATTTACGATA
AACTTGAATGGATAAGATTTCATTATTTTCATAATAAATTTGCGACTAAGACCCAGGTGT
GTAATGGATTAGTTACGCAAACTTTTTCCAGACGTTTCACGAACAACAGAAATCTAATCA
TACAAAGGAAGCAGGGAACCACTTTACCTTGCCTGAACAGGATGTTACAATGTTTTAATT
TGCAATTCAATATCTTACATGTTATTATCTTCGATACACTTGTATCTACGGAAAATGACA
TTTTACCAACTGTAACGTATTCATTGTCTACTCTAGCATAATAGACGTATTCGGTAATTG
TTCTGGATAGAAAACAAAAGATTGTTGCGGAAAACTCGCGCAGCGACGTCCAACAGAGGA
GGACAAGCATTATTTGACTTCGCACCTTGGCCTAAGATAAGGACCGAGAGAAAAAAAGAG
CAAGCTGCTACCGCCGGGCAATGAAAGCCGATTAGATTCAGTCAATCAATCGATTGTTAT
TACCCGAACTGCATTGCAAGATAGCTGTAGATATTGAAAGGTAGGCGCTAAGACGACAAG
AGGTACAAGACTTGAACGAGTTGCAATTTGCTGCTCGACCTGTACTGGAATACTCGCGAT
AACTAAACATACGCCAGCCAGTATGTATACGACCAGGATTGTGTGGTTTTCCATGTACCT
CGCATTACTAATTACGGAATGCCTGGGATTGTTTCCAGATAATACTGCACCTATCACGAG
GATAAGACGAGATGATCTCCCTTACACGGTTTTCTCTCGCGACGATCAAGACAACTTCCG
ACTTCGTTATGTTCAAGACGTCAAAGAGATGACATTAGCCGATAAACGAGTGATTGCTGT
CACAGCACGTGTGGTAGATTTTCATGACGTTCACGTTCCTTTGTTCAAAGTACAAGAAGT
TTTGTTGGCACTTATTCATTACTATTGTCTCACTAAGGCTTATCCTGATCTATTTTTGGC
CACACCTAGTAGGTACTACTGTATACTATACCCAGCGTCGAATTGTGAGCAAACTGGGAA
CAACAAGTCTTTCGAAATCACTGTAGTCATTGTCAACAAAATGTCCCCGAAAAGATTGCA
AACAAGTGACTGCGGGAACAATTTGTTCATCCTTGACAAAGACAAGTTCTCCTACAACTC
TTCCGAGGATAGATTCTTGCCTATGGAAATTATTACGTGGAAGTCAGATAAAGCCACAGA
AGAATTATGCAAGATGAAAGGCCAGTCTGCGGTAAGATATCATGAGTTTACAAATTCTGC
AGTAATTCGTATACCTTCGTCACGCGGGGGCGCACACGAAAAATTTGTGAAGCGTGTCGG
CTTTGCATACAACATCATATGGGAATTGATTAGCTGCAAACCCCAATCCCAAGCGGAAAA
TTGCCACAATTATCTGCGTGTACTCGAGGCTACAGACGACAATTCAAAGCTTCTACTTTG
CGGAAGTAATTCTTACCATCCTCGGTATAAGTACATTTCGATTGAAGAAAAGCAAGGCCA
TGGGAAAAACAGTGATGTTCGTCTCGTCTTAGGCAACGAGACTCGCTCGGGTACAGAAAT
TTGCTCTTTCGGACCAGATCAGACTGGTGTGAGTCTATTTCAAGATGGATCACTATATTC
TGCAACCGTGACAGAATTCAACGGACGAACAACAGTAATTACTCGGCATTTTGGAACGCA
GACACAATTACGCGTTCCGAAATTCGACACCAAGTTTTTAAACGAGCCACAGTTTATCAA
ACTTGCCGATGACGGTGAAAGAATTCTGATTTACATGAACGAAATGGTCTACAGTGACAA
TGGTGATGTCCGCATGGTGGCACACGTCGCTCAGGTATGTAAGAACGACAAAGGCGGACA
GCACGTGTTGGTACGACAATGGACAACATTTGTTAAATCGCGTTTGAACTGCTCGTTGAA
TGGATTCTACTTTGACCAGTTACAAGATGTGTCCGATCCTGTCGAAGTTCCGATCGGCGA
TGGATCGAACACAACCGAAACGATGGTATTCGCCACCTTCACAACGCCCGATCGTGCTGT
GCCAGGATCCGCCGTCTGCTCTTTCCGGATCAAGGATATACGGAAAGCCCTATTCGGTCG
CTTTAAGCAAGACAGGACAAACGGAATAGGTGGAAGTGAAGGACCCTCAGAAGATCGTCA
TCCTGCTTCCTGTCCAGTAGACGGATTCAGCGATACCGAGCTCCAGTTTTTGAAATCCCA
TCCTTTGCTGGAGGATCAAGCTGAAGGTCGTCTTTTGACGACACACGTTGGCGAACGATG
GAGTACCGTCTCTGTCGATCCCAGAGCAGGTCCGAAGAGAGACTGGACCGTGATCTTCGT
CGGGACGTTCAAAGGCGAAATAATCCGCTATCTCTACCCATCTGATGGGGTGAGAAACAC
TGTCATGTTGTCGAAGCACGAAGTATATGATCCATCAGAATGTACTTTGGATAACACACA
CGAGGAAGACAAAAAGAAAGACATGAAACTGAAACGCATTTTAATAGACCCGCAACAGAA
CACCTTGACGGCTGCGTTCAGGCATTGTGTCATATCTCTACCACTGAGGACTTGCTCTGT
ACATAAATGTGAACAATCTTGCGTCGCTTCCGCAGATCCCTATTGCGGCTGGAACAACGG
ACACTGTGTTAGCTACCTCTCCCTCTCTCAAAATCTCCCACAAAACATATTTTCGAATGC
CATGTATCCCAAGACAGATGTAGATTCGCTTTGCCCCGAGAAAAAAGAGGACACTAAGCC
GAGCTCTGGTCATGTAGTTCCTGCAGGAAACCCGGATGAAAAAGATAACGGAGTCGATGG
GAAATCTGGGATAGCTCTTTCGAATACGACCGATACTGCAACGATTTCAAACGTCGATGT
TTCCGTCGGAGATAAAACAGACAGTCCTGAAGCTGCGCTTTCAGTAGCTTCAAAGCCAGG
CTACATGGAAATTCATATTGGCGTGGTCATCGGAGCAGTTTTGCTCGCTCTGGTAGTCGG
CTTCCTACTTTGCTGTTGCTGTATCAGGTGCTGCTGGCGAGGGGAAATCGAGAAGTCGAT
CGATTCCGATATCAACGATTCAACAATTTCTCTCTCGCTTTGCAAGAAGACGTTTAATTC
AATTTTCTCCTGTCTGTCACCCGAACCAAAACGGCATACCATTACGAGAGACTACGAATC
GAGCACTCTCATGGAACCAAAGAAACGTCACACATCGGGCGACAGCCGACGATCAGATGA
TTTGCCCGATGGAAAAATGGTGAAACTTAACGGAACTCATAATCAGCGTCCAATATCTCA
AGGCCCTCGTACGTCTCGTCTCAACAGTAGCGGTAGCAACGGCAGCCAGGTCATGGTACC
GAATGGAACAGTTGCGAATTACCATTCCGGTAGACCTCAGTCTATGATGACCAACTCCAC
GTCGAGTATGTCGACTAAACCTGTTTCCAACCTGAATGTTCCAGCTAATCGCCCTAGCTA
CACACGTCAACATTCGGGAAAGCGCTCTTCAGACCCAGTTCACAATACCGACGAATATAC
GAACGCTCCCACTCTGCCTGCTGATAGAAAAGCCGCGAGAAATTCGACACCGGGAGGAAT
GGGATTCTACCCGGCAAGTTCTCCGATTCGATCCGATTATCCGAGTTTTCTCGATAGCTC
CGGGGTCGACGATGTGGTGGAAAACACGACCAATACCTTGCAGGGAGTCCAGGAGGTAAT
CGCTGCCGAAATTCAGAGAAGATCGCAAGAAGTCGAGCCGTTGGAAAACATCCCGGAAGA
AGAAAGGCCGAGACACGATTCCGACGACAGCGGAAAAGGCGAAAGTCCTAGAAATTCACT
GCAAAACGAAGAAGAAAGGGCCAATAAGATAACTCCTATGCCCCGACCACAGACGTTAGA
ATTCGGACAAAACAGACAGCGTCGTCATAGACTGAATTCCGAACCTCCCAACAGTACAAT
CAACATGCAAGTGCATCCACAATACTCCCGACAACCTGTGATGCGTTCCATATCCGTACG
CGGACCGGCCACGACAGTTCAACCCATTAGCATTGCCAGAGGCCAGCGTAGTGGGTCTTT
TTCGTCCCAGCCATCGACGCCAATCGGCCAATCACCACCTAAGTATATGGTTCATTCTAG
CTCCATACCACAGTCTTCCAGATCCGATCACAATATGATCTACTCGACTATGCCTAACAA
TCCAAACGGAAGAAACAGGGCACCGCCCGAAGCATATCGACATGGCTACGATCCTCACTT
TGTTCAAAATCCGTCCCAATACGTGCGATTTGATTCGCAAATGGAGAATGTACATCCAAA
TAACATGTCGATGCAAGAAAAATATTCAAGTCTTCCGTCACGAGGTAGAACGAAACGTAA
CGCTCAACAGCAACAGCAACAGCTACAACAACAACAACAGCAACAACAGCAACAGCAACA
ACAACAACAACAACAGCCAGCCACAGTTTTACGTTCAGAAGTCACAGCCGGCTGTACCGT
TTAA
| ProSiteProfiles |
Semap_dom (IPR001627) - T[123-648] 62.373 |
| SMART |
Semap_dom (IPR001627) - T[225-617] 4.5E-45 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[238-649] 1.8E-90 |
| Pfam |
Semap_dom (IPR001627) - T[244-602] 1.1E-71 |
| SUPERFAMILY |
Semap_dom_sf (IPR036352) - T[246-654] 3.53E-78 |
| SMART |
PSI (IPR016201) - T[650-705] 0.0072 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SEM6A_HUMAN | 35.193 % | 262 | 3.06E-72 |
| SEM6D_HUMAN | 30.705 % | 270 | 1.3E-74 |
| SEM6C_HUMAN | 34.598 % | 252 | 1.41E-69 |