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  1. Transcript 'Phmamm.CG.MTP2014.S5...'
  2. Transcript 'KH2012:KH.C5.42.v3.A...'
  3. Transcript 'Phmamm.CG.MTP2014.S8...'
  4. Transcript 'KH2012:KH.C3.696.v2....'
  5. Transcript 'Harore.CG.MTP2014.S3...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S3.g05398.01.t

Possible name(s)

HNF4A; HNF4G; RXRA

Location

S3 [264,940 / 273,961]

Sequences

Amino acid sequence

Length: 489

>Harore.CG.MTP2014.S3.g05398.01.p
MTAEVNLSNLSLQSNQQQTRSIDSPPEGSMLSPSDQLSDQESIGEFAGDGFRSFCSICGD
RATGKHYGANSCDGCKGFFRRSVRKSHQYQCRFNRNCVVTKDKRNQCRYCRLRKCFRAGM
RKEAVQNERDRISTRKSNLEDASSLSVANLLNADTLSRQQLNAMACSGSNEVMDSSSINN
KKIASINDVCDSIKQQLLVLVEWAKYIPAFSELPLDDQVALLRAHAGEHLLLGVAKRSLP
YRQVLLLGNDFIIPRRCPEIEISKVAVRVLDELVKPLIELNLDDNEFACIKAIVFFDQDA
KGLQDPAKIKSMRFQVMCNLEDYINDRQYDSRGRFGEILLLLPALQSITWQMIEQIQFVK
IFGGAKVDNLLQEMLLGADAYDGSDPNGLTTLRAPPVDISVSTGSAMPGHPSAVPFLSLE
PVSVLGQNCEQCHVSQPSSPINSSGVAVEMTSSLNKFKNGMSGPHCPQSFGVPAMQMDVD
HVLPKVEMF

Nucleotide sequence

Length: 4,186

>Harore.CG.MTP2014.S3.g05398.01.t
AGTTACAAATCATGGTGACATGTGTGTAGATGACCGATCAGTTACTTGCTTAATTTACTA
CGTACTCAAATCCAGCCATAGTTAAGAATAGAATCATGACTGCTGAAGTGAACCTCAGCA
ACCTGTCTTTGCAATCCAACCAACAGCAAACGAGAAGCATCGATTCGCCACCTGAAGGAT
CCATGTTAAGTCCAAGTGATCAGCTGAGCGATCAAGAATCGATCGGTGAATTCGCAGGGG
ATGGTTTCAGATCATTTTGTTCAATCTGTGGTGACCGTGCTACTGGGAAACACTACGGAG
CAAACAGCTGCGATGGTTGCAAAGGTTTTTTTCGTCGTAGTGTAAGAAAAAGTCATCAAT
ACCAATGCAGATTTAATCGGAATTGCGTTGTAACCAAAGACAAGAGGAATCAGTGCAGAT
ACTGCCGACTGAGAAAGTGCTTCAGAGCAGGAATGAGAAAAGAAGCAGTTCAAAATGAAC
GAGACAGAATCAGTACAAGGAAATCGAATTTGGAAGATGCATCTTCTTTGTCTGTCGCCA
ATCTCCTCAATGCAGACACATTATCGAGACAGCAACTCAATGCAATGGCATGTAGCGGAA
GCAACGAAGTAATGGATTCTTCATCTATTAACAATAAAAAAATTGCTTCCATTAATGACG
TCTGTGATTCGATTAAGCAGCAGTTGCTTGTCTTGGTTGAATGGGCCAAGTACATTCCTG
CATTTTCAGAGTTACCTCTAGATGATCAGGTCGCGTTATTGCGGGCGCATGCTGGAGAGC
ATTTACTTTTAGGAGTTGCGAAACGTTCGCTTCCCTACAGACAAGTTTTGCTTCTTGGAA
ATGACTTCATCATACCGAGACGCTGTCCTGAAATTGAGATTAGCAAAGTCGCCGTACGTG
TTTTAGATGAGCTCGTTAAGCCTCTAATTGAACTAAACCTCGACGACAATGAATTCGCTT
GTATTAAAGCAATTGTTTTTTTCGACCAAGATGCAAAAGGGTTGCAGGATCCTGCCAAAA
TTAAATCCATGAGATTTCAGGTGATGTGCAATCTCGAAGATTATATAAATGATCGGCAGT
ACGATTCCAGGGGAAGGTTCGGTGAAATCTTACTCCTGTTGCCGGCTTTGCAGAGCATCA
CATGGCAGATGATCGAGCAAATACAATTCGTCAAGATTTTTGGTGGTGCCAAAGTCGACA
ACCTTTTACAAGAAATGTTACTAGGAGCGGACGCATACGATGGGTCAGACCCAAATGGAC
TGACTACACTCCGTGCCCCGCCTGTTGACATCTCTGTCAGTACTGGTTCTGCTATGCCCG
GCCATCCGTCCGCAGTCCCCTTTTTAAGCCTCGAGCCTGTCTCAGTGCTCGGGCAAAACT
GTGAACAGTGTCACGTCAGTCAGCCAAGCTCACCAATAAACTCCTCAGGAGTTGCTGTTG
AGATGACATCATCTTTGAATAAATTTAAGAATGGCATGTCTGGACCACATTGTCCTCAGA
GTTTTGGGGTGCCTGCTATGCAAATGGATGTGGATCACGTCTTGCCAAAAGTGGAAATGT
TCTAACGTTCTCAATTTTCATCTGCAAAGCTTAATTATCGGTAGCTCATAGCAATGAACC
ATGTGTGAAATACTACCAGGCAAGCAGTTGGTTAGTTGCAGATTCCCAGCAATTTTACAG
CAGAAACAATGAGCTTGGCTGCATGCCATGATATGGATTTTCACATGAAGTCCTGCATCC
ATACATTATCCTGCAATTTTTGTTTTACAATGGGGTCTGATTAATAATGGTTTTTATCAA
TCTTTGTAACTGTATTCCTGCTTTTGAAATCGCTTGAAAGGCATAAGCTAAGTATTAGCT
AAGTGATCATGCAACTTCACTGAGCCTGTGTAATTCTAGAATCGTTTCATATTTGATTGC
TTTAGTCAAAGTAATATATAACTGTTTGTGGATTCAAGTTATATCAGGAACATGATCTCG
TTATTTATGTTATGTCAACTTTTTCAACAGGTGATGTGGTACATGTTATGTAATCTGATA
ACAAGAGTACTGTAATTTCAGGGGTAACAAATTCTTTCCGGTATAAAAATGAAATAACAT
GAACAGAGCACATCACGTTCTGTACATTTTGCCCTTCCTGCCAGCGAACATAGAATTTAT
TACCTTGCAGTGTTGTGTTCCCTCTTGCAAGTCTTGAAATTCGTTTTTGCGCAATTTTTC
TTTTAATGATTTTACCTCTTATAATTTTCTTACTACTTTGCTTGCTTTAGTTCAATTTCA
TTGTCACAATCTGAATTCTGGCAGATTTTTGTTTCTTTTGGCCCGTGTACATAGAGCAAG
CAGAGTATAACAGGTACTCAACTTCCCTGTCTGTCACCTGAGCTATCTGAAGTTTTGTAA
CAGTCAGTGGCATTTTCTGTGCTGTATATGCTTCGTTCCTGAACTTGATTTTCTGTCCTT
TATTTTGTAATTCGGTTTACACATGATATTTTAAGTGTTAGTACTTCAAATTCTCATCCT
GGGAGTAGTGTAATCTAGCCAAGTGAAAGAGTATGCTGACATTCAATTCTGCCTACTGTT
TACACATTCATTCAAATATTTTACCTACCAAACTACCTATGTATTTGAGTACCAAAGATG
TACAAGATATTTGAAGCTACTGCAGTATTAAATGCCATTAATTGCTTTCTAGTTGATAAA
GAAAGCGTCTCATTTGCAGACCGCTTGTGAAGGGATATTGTAATTTTGCGATTCCAAGTT
TTCTGTTCTAATTTTAATGTAATGAAGCCGAAGATATGAAAAATGGCTTAATGACGATTG
AAATAGAAGAAATTCCTTCATAAAGAGCAATTACACTGTACTTTACAGTGCTTTTTCCGT
GAGGCACCACAAATCAAACATTTTGAGGTGGATGCACCGCTGCTCTTGCATGCAATGCAG
TATAAGACCTCTAATGCGGTGCTTCACGAATATTTTGTGTTGATCATTTTGTGCCTTTGC
TGGAAACTGAAATGTTTTTTGAACAGTGTTAAGACTGGTCATTAGTTAGCATTGCACATT
TTTCATTACCATACATAACCCAATAATGTTTTTCGTCCCTATTCCATTTAGTAAGCCAAT
GAAAGTAAGCACACCACGGCTCATTTTTTTTTCTACACTATTAACTGATATTAACCATTG
CCTTGATAACTATAGCCGTCACTGAATATCTTTTTTTTAATAATTGATTACTGGATTATC
TTATCGATATCTGTTGTATACCATGTCGTTCATTTTTAACATCTTTTGCCATGGTATTGT
ATTGATTTCACAAGTGATTTTTTTTTAATACATATAATCGAAAACATTTTATTCTCTTCC
ATTTTGTATTGAAAGTAATCAACTCGTGTTCCTTTTGATTGTACATTGATTGTGTTTATC
TAGCCATTTGTTACTCTGTGAATGCCACGTTAATTATCATCCTTGATATCACTAGTATGG
TTTACAAAATGCATAAAATATGCAATAGACCTCTATTGTTGACAATTCTTTTTGGTGAAC
TCGTTTGAAATTGTCTTTTCTAATTAGTTGGACTTCATACAAGAAAGACAGAACTATGGC
ACATTTTGCCCTTGCAGATTCTGCAACACTTTCACATGTATTCATTAATTTAAAATTAAC
TGGATGGAAGTAATTTTAAATGTAGGACTTGTCAAAGAAGCACTCACTAAGTTGCAATTA
CACCCAAACACTATAAGTACATTTCGAATGGTTTTTGTACTGTGACATTTGCCAAATTAC
AACTCTGATATCTATGATATATCTACATGACCTTGACACTAGTTGCTGGCGTCCTTGCAA
TGATGGCCTGTGGGTGGTGTCAATGTTGTTGGAAAATATTACTGTTAAATTCATTTTCAT
ATTGAAATTCGCTTCCTTTGGTAACAAAAAAATAAGTGTAATAATTGTCGTTACCTTGAC
TGTCTGTATATTGCCTTTTACATGACGTGATTTTATATTGGATATCGGAATGGAATCCTT
CAAAAGGCCAGTGATGTTCTATGCATTGAATTAGCTGAAAGTTTACATGCGTTTTTGGTG
CTACCTATTTTGTATAGTTGTAATATACGTGATCGAAATTTCGAATGAAATTGTTGTTGA
TAATTGGAGGTCTTACATGAATCAAAATACATTTCAGTGTGGCGAC

InterProScan

Gene3D
Znf_NHR/GATA (IPR013088) - T[47-135] 2.0E-32
ProSiteProfiles
Znf_hrmn_rcpt (IPR001628) - T[52-127] 20.913
SMART
Znf_hrmn_rcpt (IPR001628) - T[52-123] 8.2E-37
Pfam
Znf_hrmn_rcpt (IPR001628) - T[54-122] 1.4E-28
PRINTS
Znf_hrmn_rcpt (IPR001628) - T[55-71] 1.6E-17 - T[71-86] 1.6E-17 - T[104-112] 1.6E-17 - T[112-120] 1.6E-17
ProSitePatterns
Znf_hrmn_rcpt (IPR001628) - T[55-81] .
PRINTS
Nuclear_hrmn_rcpt (IPR001723) - T[116-126] 2.8E-26 - T[192-213] 2.8E-26 - T[213-229] 2.8E-26 - T[280-295] 2.8E-26 - T[337-354] 2.8E-26
PRINTS
ThyrH_rcpt (IPR001728) - T[118-134] 4.5E-6 - T[189-210] 4.5E-6 - T[215-234] 4.5E-6 - T[280-302] 4.5E-6
SUPERFAMILY
NHR_like_dom_sf (IPR035500) - T[122-375] 1.27E-61
Pfam
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[178-362] 1.1E-41
SMART
Nucl_hrmn_rcpt_lig-bd (IPR000536) - T[191-349] 3.2E-47

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
RXRA_HUMAN 40 % 264 2.9E-83
HNF4A_HUMAN 68.611 % 497 7.56E-174
HNF4G_HUMAN 72.321 % 496 1.8E-174





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