- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S41.g14375.03.t
Possible name(s)
NKX2-3; NKX2-5; NKX2-6
Gene model
Location
S41 [345,966 / 347,580]
Amino acid sequence
Length: 354
>Harore.CG.MTP2014.S41.g14375.03.p
MCRGQNIPKAVRFINEIGFNLFKFRPVTGSTFSILHVTDSAHAKSEKSDNLSNCSGSPRD
EDKKKREEDGTKNRQRTRRKPRVLFSQAQVFELERRFKQQRYLSAPEREHLAQILKLTST
QVKIWFQNRRYKCKRQRQDKTLELASACPPRRVAVPVLVRDGKPCLGSPTGHMNGTHQLN
PYSAPYNVTVTPYHNYPSSYSSCGYNSYHHPHNPAASYTAAAYGSAAASAGYNTLSGAAM
GAGMGGVGGLPGSALHHHQSATVGVAPSHFSAMQGQVQQGASIRNHSTTDYMYKLGLLKT
VNSLTHIIRLTCSNACSSKRIIYHIYIFLNLIEISSTIRRFSIKTQRLFSGNSG
Nucleotide sequence
Length: 1,065
>Harore.CG.MTP2014.S41.g14375.03.t
ATGTGTCGCGGGCAGAACATACCGAAAGCTGTACGCTTTATTAATGAAATCGGTTTTAAT
TTATTTAAATTCCGCCCGGTCACAGGGTCGACGTTTTCGATACTGCACGTTACTGACTCT
GCTCACGCGAAATCCGAGAAATCTGACAACCTGAGCAATTGCAGTGGAAGTCCCAGGGAC
GAGGACAAGAAAAAACGCGAAGAGGACGGTACCAAGAACCGCCAACGTACTAGACGAAAA
CCGAGGGTACTCTTCTCTCAAGCACAGGTGTTCGAACTGGAAAGAAGATTTAAACAACAG
CGATATCTTTCTGCGCCAGAACGCGAACACCTTGCGCAAATATTAAAGCTAACTTCGACC
CAGGTCAAAATTTGGTTTCAAAATCGTCGATACAAATGCAAGAGGCAGAGACAGGACAAA
ACCCTTGAACTGGCAAGCGCATGTCCCCCACGTCGAGTCGCGGTCCCTGTCCTGGTACGG
GATGGAAAACCGTGCCTCGGAAGTCCAACGGGTCACATGAACGGCACTCATCAGTTGAAC
CCGTACTCGGCCCCCTACAACGTCACAGTTACCCCCTATCACAATTACCCAAGTTCGTAT
AGCTCTTGCGGATACAATTCGTATCATCACCCGCATAACCCTGCAGCGAGTTATACTGCT
GCCGCATACGGTTCTGCCGCTGCCTCTGCAGGGTATAACACTCTATCCGGAGCAGCGATG
GGTGCTGGAATGGGAGGGGTCGGTGGGTTACCTGGATCAGCACTCCATCATCACCAATCA
GCAACTGTCGGTGTTGCACCTTCGCATTTTTCCGCAATGCAAGGCCAAGTGCAACAGGGC
GCCAGTATAAGGAACCATTCGACAACGGATTATATGTATAAACTAGGACTTTTAAAGACC
GTTAACTCCCTTACCCACATCATCAGACTAACGTGCTCGAACGCTTGCTCGAGTAAGAGG
ATTATATATCACATTTATATTTTTTTGAATCTCATAGAAATTTCCAGTACTATTCGACGT
TTTTCAATCAAAACCCAGCGCTTATTTTCGGGAAACTCCGGTTAA
| PANTHER |
NKX-2.5 (IPR033629) - T[30-233] 2.1E-78 |
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[73-137] 1.5E-22 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[76-136] 20.309 |
| SMART |
Homeobox_dom (IPR001356) - T[78-140] 4.0E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[79-135] 6.3E-20 |
| CDD |
Homeobox_dom (IPR001356) - T[79-137] 1.15861E-21 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[100-111] 2.4E-6 - T[115-125] 2.4E-6 - T[125-134] 2.4E-6 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[111-134] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NKX26_HUMAN | 62.581 % | 179 | 9.19E-54 |
| NKX25_HUMAN | 50.718 % | 164 | 4.48E-48 |
| NKX23_HUMAN | 68.939 % | 157 | 6.2E-45 |