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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S426.g13437.01.t

Possible name(s)

GMDS; TGDS; UXS1

Gene model

Harore.CG.MTP2014.S426.g13437

Location

S426 [16,749 / 21,559]

Sequences

Amino acid sequence

Length: 370

>Harore.CG.MTP2014.S426.g13437.01.p
MSSNNHASNGGGRKDESEAKKKVALITGITGQDGSYLTELLLGKGYEVHGIVRRSSQPNT
ALIEHLYADRATHQMGNMILHYGDLTDSTCLVKIISQIRPAEIYNLGAQSHVKVSFDLAE
YTANVDGLGTLRLLDAIRTCDLTHTVKFYQASTSEMYGKVMEIPQTEKTPFYPRSPYAAA
KVYAYWITMNYREAYGMFTCNGILFNHESPRRGFNFVTRKISRSVAKIHLGLQDVMSLGN
LDSKRDWGHARDYVKGMWMMLQCDKPGDYVLATNEAHSVREFVEKSFSHVGIEIGWKGKG
VDEVGFDQSTGITRIKVDPKYYRPTEVEFLLGDPKKAKKTFGWEPVTKFESLVKEMVDAD
LALMKKNPNA

Nucleotide sequence

Length: 2,929

>Harore.CG.MTP2014.S426.g13437.01.t
AGAATCAAATTTTCTTGCTCTTCATCTGATTTTATTTCTCGTTAAATCTTACAATCATGT
CTTCGAACAATCACGCAAGTAATGGAGGAGGAAGAAAAGATGAATCGGAAGCGAAAAAAA
AGGTCGCGTTGATAACAGGAATTACGGGTCAAGATGGTTCTTATTTGACTGAACTGCTGT
TGGGAAAAGGATATGAAGTTCATGGTATCGTTCGAAGATCGAGCCAACCAAATACTGCAT
TGATTGAACATCTGTACGCTGACAGAGCAACTCATCAAATGGGGAATATGATATTGCATT
ACGGAGATCTAACCGACAGCACTTGCTTGGTGAAAATTATAAGCCAGATTCGTCCGGCCG
AAATCTACAATCTCGGAGCCCAAAGTCACGTGAAAGTATCGTTCGATTTGGCCGAATACA
CAGCGAACGTTGACGGCCTGGGAACTCTGCGACTTCTCGATGCGATACGTACCTGCGATT
TGACGCACACTGTCAAATTTTATCAGGCTTCGACCAGCGAGATGTATGGAAAGGTCATGG
AGATTCCACAGACAGAAAAAACCCCATTCTATCCACGTTCTCCGTACGCCGCCGCTAAAG
TTTACGCTTACTGGATAACAATGAACTATAGGGAAGCGTACGGGATGTTCACATGCAACG
GGATCCTGTTCAATCACGAGAGTCCGAGAAGAGGATTCAATTTTGTGACGAGGAAGATCT
CGAGAAGTGTCGCAAAGATACATCTTGGATTGCAAGATGTGATGAGTCTGGGAAATCTTG
ATTCCAAACGTGATTGGGGACATGCCAGAGATTATGTCAAAGGAATGTGGATGATGTTGC
AATGTGATAAACCAGGAGATTACGTTCTTGCGACAAACGAAGCTCACAGCGTTCGTGAAT
TTGTTGAAAAATCATTCAGTCATGTTGGGATTGAGATCGGATGGAAGGGAAAAGGAGTTG
ATGAGGTCGGCTTCGACCAAAGCACAGGCATCACTAGGATCAAGGTTGATCCTAAATACT
ATCGTCCAACTGAGGTTGAATTTCTGCTCGGAGATCCGAAAAAAGCGAAAAAAACCTTTG
GTTGGGAACCGGTAACAAAATTCGAATCTCTGGTGAAGGAAATGGTGGATGCCGATCTTG
CTCTTATGAAGAAGAATCCGAATGCCTAAGTCTTTAGTTAATTGTTAACTTGGTGCTAAT
GCTACGCTTAATAAGATTATTATTAGATATATGCAATTACATCAACGATTTTCCTACAGC
TTATGGTCCAATATAGCCTGGGTCAAACAATGTCTGTTCATATTAAAAATCTATCTCCTT
CATCCTGACAAATTTCCCGGTTTTCTTGACACAAGCTAGCTATATACTTCTATCTTCTAT
ATACATAGTCAATGTTTGTTTGTGTGTTCGTTTGGACCGATTCGAACCAAATTTAGTCTG
GTTACTTAGGGTATCCCTGGCCAGGTTGTAGCGGTATTAATTCTTCAAAAATAGGACCAG
GACTGCTTTAACACCACCTACATTTGCATAGTTCTTTGGTATTTTTTCCCCAAAAATTGC
CCCGACCGCTCTAACGCTCACCTGCGTCCAGTTAAATAACTATTTCTTTTTTCAACTGGA
TGCTTATAAGTATTTTGAAGTCTTACCTGGGCATCGTCCCGATTCTCTTCTATAAAACTA
ACATTTTTATAAACTGCACTCCAGATTTTTCTATATTAAATACTTTATTTAAAATTGGAA
ATCTAATTTACACAATCTATCCAGATAAGTAAGGACCTGTTGTATTTTGAATATGTTTGT
TTATGTTTTACACAAATCACTGTTTTGAATTTTCCGTTTTTTTCTGGACACTTTCATTGT
GTGAAAAATCCCAAACACTGTATGTAACCTCTCGTCTGTATGTCACCTCTTCAAAATTCC
CCATTTTGCATTTGTTTTTGGCGATCGGCTGTGGAGTTGGCAGTTAACTCTTTCAGGAAC
ATCCCATATGCAATGAATGTATAAACCTTTAAATATGATATATGAATATGATAATAATGA
TAACTAGGATTGTGGTACAATTATGCAGAACTCCCATCACTTTCATTGGAAAAAATTGTC
ACATCACCACCACTAGCATCACCGTACTTAGTTCAAATCACGGCAGTTTATCATTTACAT
ACTAAATTGCGTACTACATACTATATGCTAATAATATGAGCTGAATTTTTAAGGGCACCG
GCCCCCTCAATGGGAATGGCCCCTTTTTTTCCACCGTCATCTCTGTAAGGAGAGAAATAT
GAATCCGAAAATCATGAAATTACATTTAGCTTTGAAGCTTCGAATATGATATAGTAATCA
CCTTTCTTTCCGTTCCAAAAAATTGGTTGTTGAGTTGATTGGTTTATGACCAAAATCCTC
ACTTAATGACCCAACTCAACCTTACCTTCCAACTCCACATGCTTGAAGTCAAATTGTCAA
ACGTTCTTCAACTCTTCTTCACAATTGTAAGTTCTTCAAATTTCGCAGCAACAGATTATT
TTTTTCTCTCAATATTTTATCACTTGAATCACTATAATGTTTCTATGTACTAGAATATAT
TACGATATGAAATTCTCATGGTCGAAGTAATGCCGACTGATGCCATAAGCATAAGCTTTG
AATCCTGCATTCCGTAACTCCTATAATGCTAACACATTCAATAATGGTTAAATGAAGTAT
AGAGTAATCGATTCGTCTGAGCTGTAAATATTATATTATTATTGGACACTGAAGCTTGAA
AAAAAAGCCTATTTGTAGTTTCCCATCTTTCCATTGATGCACAAACCATGCATTACTATT
GCTAGGCCAGTTGTTATCAACCTAATATGGATTTCTCAGCCATTTTCCTTCATTTCCCAC
TTCACTTCCCCTGCTGGAGAAAGTGCAACAGTTTGAATCTACCAATCTG

InterProScan

PANTHER
GDP_Man_deHydtase (IPR006368) - T[7-368] 5.0E-172
Hamap
GDP_Man_deHydtase (IPR006368) - T[22-366] 55.616
SUPERFAMILY
NAD(P)-bd_dom_sf (IPR036291) - T[22-361] 2.35E-78
TIGRFAM
GDP_Man_deHydtase (IPR006368) - T[22-363] 7.5E-179
Pfam
NAD(P)-bd_dom (IPR016040) - T[25-356] 1.3E-154

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
GMDS_HUMAN 70.857 % 527 0