- Molecular Tool 'Hr-FoxB MO3 (Hashimoto 2011)' >
- Transcript 'KH2012:KH.C8.640.v2....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Phmamm.CG.MTP2014.S3...' >
- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S42.g12648.01.t
Possible name(s)
ADGRB2; ADGRB3; HMCN1
Gene model
Location
S42 [193,938 / 196,901]
Amino acid sequence
Length: 563
>Harore.CG.MTP2014.S42.g12648.01.p
MSPVTSKYNRNRNISYDTCTGESKQEELCVASCGSSVIPSEWGVWSSYGSCVSAEPLCLS
GIRTRTRQCSNNGLVVSSTLCTGGIAVATESSPCNTNLCSKFDAWVNGSCSLTCGTGTLT
STRTCVTGTAAASCTSKTASCSQTTCRKNYKIYLTVYEWDQWTSWSSCSDTCTESPQTRT
RVCKDKISGTPATTAKCAGSLTPTQTETQNCNAGSCTAYSAWALSACSVTCAAGTQSEKR
TCTASGTIPAGCDTQNSKACDLGVCKWLQIVLIDLFGLAFSPTTDKDLDIVVLVDGSSMT
DSCLLKEITLGWRAPFTSASGLLTRTNFPYYFKQLDIVNGFVKMNIILLSYFLFHLSGRK
TNLSGTNSSLNDQLLSDWKTVALDKTRLALHDNSGACTYVSNSDTTSFFQLNYLNEAITK
AKVSFIHISVDTMSMACGLNNVPYSLNCIHVGHFIATNGDRPTSKNVLIIFLGDYRTLPS
GTSFLNVIGIVRKQYTKYDLIAVISTLDHTTLTTTVAETQEKFCNSYGCMRKNPNGCVRY
IGHLGEPYTTIVPRFRTMVNANL
Nucleotide sequence
Length: 1,692
>Harore.CG.MTP2014.S42.g12648.01.t
ATGTCACCTGTTACATCAAAGTACAATCGAAATAGAAATATTTCTTATGACACGTGTACC
GGAGAGTCAAAACAAGAAGAGCTATGCGTTGCTAGCTGTGGATCTTCTGTTATACCATCT
GAATGGGGAGTTTGGTCTAGCTACGGAAGCTGTGTGTCAGCCGAACCACTTTGCCTAAGC
GGAATCCGGACTAGGACGAGACAATGTAGCAATAATGGATTGGTGGTTAGCAGCACTCTG
TGTACAGGAGGAATCGCGGTTGCAACAGAGTCTTCTCCTTGCAACACAAATCTCTGCTCG
AAATTTGATGCCTGGGTTAATGGTAGCTGCAGTCTAACCTGTGGAACTGGAACACTGACG
TCGACAAGAACATGCGTAACAGGAACAGCCGCTGCAAGCTGTACATCAAAAACAGCATCA
TGTTCCCAGACCACTTGCCGTAAGAATTATAAAATATATTTAACGGTCTATGAATGGGAT
CAATGGACATCATGGTCTAGCTGTTCTGACACATGTACAGAGTCTCCCCAAACAAGAACA
CGTGTATGCAAAGATAAAATATCTGGTACACCAGCAACAACTGCAAAATGTGCTGGTAGT
CTCACACCTACTCAGACCGAAACTCAGAATTGTAATGCAGGATCGTGTACTGCCTACTCT
GCTTGGGCACTGAGTGCGTGCTCTGTCACCTGTGCTGCAGGAACACAAAGCGAAAAAAGA
ACATGCACTGCATCGGGAACTATTCCGGCAGGTTGCGACACTCAGAACTCGAAAGCCTGC
GATCTTGGAGTTTGTAAGTGGCTTCAAATAGTTCTCATTGATTTGTTCGGTTTAGCCTTT
AGTCCAACTACTGACAAAGATCTTGATATTGTCGTATTGGTGGACGGTTCCTCAATGACT
GATAGCTGTCTGCTGAAAGAAATAACGCTTGGATGGAGGGCTCCATTCACATCCGCGTCT
GGATTACTGACACGAACAAACTTTCCCTATTACTTCAAGCAGTTGGATATTGTTAATGGG
TTCGTTAAAATGAATATAATTCTACTATCATATTTTCTGTTCCATTTATCCGGTCGTAAA
ACAAATTTGTCGGGAACAAATTCATCCCTTAACGACCAATTACTCTCAGATTGGAAAACT
GTAGCACTCGATAAAACCAGACTTGCACTCCACGATAACAGCGGGGCGTGCACCTATGTT
TCAAATTCTGATACTACCAGTTTCTTTCAGCTGAATTACTTGAATGAAGCAATTACTAAA
GCGAAGGTAAGTTTTATCCATATCTCTGTTGATACTATGTCAATGGCTTGTGGCCTCAAT
AATGTACCATACTCCCTCAACTGCATCCATGTAGGTCATTTTATTGCGACGAATGGCGAT
CGACCTACAAGCAAAAATGTCCTTATTATTTTCCTCGGCGACTACAGAACATTGCCTTCA
GGAACATCATTTCTGAATGTCATTGGTATTGTAAGAAAGCAATACACCAAATACGATTTA
ATAGCTGTCATCTCAACGTTGGATCACACCACGCTAACAACTACTGTAGCAGAGACTCAG
GAAAAATTCTGCAATAGCTATGGATGTATGAGGAAGAACCCCAACGGATGTGTGAGATAC
ATTGGACATTTAGGAGAGCCTTACACCACCATTGTTCCGAGATTCAGAACTATGGTGAAC
GCTAATCTTTAG
| SUPERFAMILY |
TSP1_rpt_sf (IPR036383) - T[38-99] 3.92E-6 - T[158-216] 1.57E-7 |
| Gene3D |
TSP1_rpt_sf (IPR036383) - T[38-99] 2.6E-6 - T[157-216] 1.3E-7 |
| ProSiteProfiles |
TSP1_rpt (IPR000884) - T[39-100] 8.773 - T[156-217] 10.036 |
| SMART |
TSP1_rpt (IPR000884) - T[42-100] 0.058 - T[102-147] 1.5 - T[159-217] 6.9E-5 - T[219-266] 0.054 |
| Pfam |
TSP1_rpt (IPR000884) - T[161-216] 1.3E-4 - T[224-265] 7.5E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HMCN1_HUMAN | 29.767 % | 81.6 | 5.74E-16 |