- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g51266.01.t
Possible name(s)
CCT4; CCT7; TCP1
Gene model
Location
chrUn [315,409,168 / 315,415,017]
Amino acid sequence
Length: 486
>Boschl.CG.Botznik2013.chrUn.g51266.01.p
KSTISNDGATILKLLDIVHPAAKTLVDISRSQDAEVGDGTTTVTLLAAEFLKQIKQYVED
GVHPQVIIRAYRKATLLAVERIREIQVTIRKDDTKEWRSLLEKCATTALNSKLVAAYKDF
FAPMIVDAVSMLGDLLPLNMIGIKKVSGGALSDSKLVAGVAFKKTFSYAGFEMQPKKYIN
PKIALLNVELELKSEKENAEIRLDNVADYQAVVDAEWSILYDKLDAICQSGAKVVLSKLP
IGDVATQYFADRDMFCAGRVTVEDLKRTMKACGGMIQTSVQSLTEDVLGTCELFEEEQVG
GERFNFFRGCPQAQTCTIIIRGGTEQFMEETERSLHDAIMIVRRAIQNDSVVAGGGAIEM
EISKHLRDHSRTIKGKQQMLIAAYAKALEIIPRQLCDNAGFDATNILNKLRQGHASGKKW
YGVDINREDVADNFEAYVWEPSLVKINALTAASEAACLILSVDETIRNPRSSVDAAPAGR
GRGRPR
Nucleotide sequence
Length: 1,463
>Boschl.CG.Botznik2013.chrUn.g51266.01.t
GGCAAATCTACCATCTCTAATGACGGGGCGACAATTTTGAAGCTTCTTGACATCGTCCAC
CCTGCAGCAAAGACGTTAGTCGACATTTCACGTTCACAAGATGCCGAGGTTGGAGATGGC
ACAACAACGGTTACACTCTTGGCAGCAGAATTCCTGAAACAGATTAAACAGTATGTGGAA
GATGGTGTTCATCCGCAGGTTATCATCAGAGCGTATCGTAAAGCGACACTCCTCGCAGTG
GAAAGGATACGAGAAATTCAAGTGACGATCCGCAAAGATGACACTAGGGAGTGGAGGTCG
CTGTTAGAAAAATGTGCCACCACCGCCTTGAACTCGAAGTTGGTGGCTGCGTATAAAGAT
TTTTTCGCGCCGATGATTGTCGACGCCGTGTCCATGCTCGGCGATTTGCTGCCTTTGAAC
ATGATCGGTATTAAAAAGGTCTCCGGTGGAGCACTAAGGGATTCGAAGCTCGTGGCTGGA
GTCGCTTTCAAAAAGACTTTCTCGTACGCCGGTTTTGAAATGCAGCCCAAGAAATATATT
AACCCGAAAATAGCTTTACTCAACGTTGAACTCGAGCTCAAGTCTGAGAAAGAGAACGCA
GAAATCCGATTAGATAATGTCGCGGACTATCAAGCTGTTGTCGATGCGGAATGGTCTATT
TTATATGACAAACTCGATGCAATATGTCAAAGCGGCGCAAAGGTTGTTTTGAGTAAACTA
CCTATTGGTGATGTAGCAACGCAGTATTTTGCTGACAGAGACATGTTTTGCGCTGGCAGA
GTTACTGTTGAAGATTTGAAGCGTACCATGAAGGCTTGCGGCGGAATGATTCAGACCTCT
GTCCAGAGCCTGACCGAAGACGTGCTCGGAACTTGCGAGCTTTTCGAAGAAGAGCAAGTC
GGCGGGGAAAGGTTCAATTTCTTCCGCGGCTGCCCGCAAGCGCAGACCTGCACCATCATT
ATCCGGGGCGGCACCGAGCAGTTTATGGAAGAGACGGAACGCTCCCTCCATGACGCGATC
ATGATCGTCAGACGAGCAATTCAGAACGATTCAGTCGTCGCAGGCGGTGGCGCGATTGAG
ATGGAGATCAGCAAACACTTGCGTGACCACTCGCGAACCATCAAGGGAAAGCAACAGATG
TTGATTGCGGCATATGCGAAGGCTCTAGAAATTATACCGAGACAGCTTTGCGACAACGCT
GGGTTTGATGCCACTAACATCCTGAACAAGCTCAGGCAGGGTCATGCTTCGGGCAAAAAA
TGGTACGGAGTCGATATCAACAGGGAAGACGTCGCCGACAACTTTGAAGCTTACGTCTGG
GAACCTTCTCTGGTCAAGATCAATGCCTTGACGGCTGCTTCTGAGGCTGCCTGCCTCATC
CTTTCTGTCGATGAAACAATCCGCAACCCACGATCCAGTGTTGATGCTGCGCCGGCCGGC
CGTGGACGCGGCAGGCCCAGATA
| CDD |
Chap_CCT_eta (IPR012720) - T[1-471] 0.0 |
| TIGRFAM |
Chap_CCT_eta (IPR012720) - T[2-471] 2.9E-241 |
| Gene3D |
GROEL-like_equatorial_sf (IPR027413) - T[2-87] 4.7E-170 - T[350-466] 4.7E-170 |
| PRINTS |
Chaperone_TCP-1 (IPR017998) - T[2-20] 3.0E-24 - T[32-51] 3.0E-24 - T[317-339] 3.0E-24 - T[351-363] 3.0E-24 |
| PANTHER |
Chap_CCT_eta (IPR012720) - T[2-472] 1.5E-190 |
| PANTHER |
Cpn60/TCP-1 (IPR002423) - T[2-472] 1.5E-190 |
| Pfam |
Cpn60/TCP-1 (IPR002423) - T[3-468] 8.6E-148 |
| SUPERFAMILY |
GROEL-like_equatorial_sf (IPR027413) - T[3-89] 6.28E-71 - T[349-468] 6.28E-71 |
| ProSitePatterns |
Chaperonin_TCP-1_CS (IPR002194) - T[4-20] . - T[32-40] . |
| Gene3D |
TCP-1-like_intermed_sf (IPR027410) - T[88-157] 4.7E-170 - T[314-349] 4.7E-170 |
| SUPERFAMILY |
TCP-1-like_intermed_sf (IPR027410) - T[98-157] 3.05E-26 - T[312-348] 3.05E-26 |
| SUPERFAMILY |
GroEL-like_apical_dom_sf (IPR027409) - T[153-322] 8.89E-48 |
| Gene3D |
GroEL-like_apical_dom_sf (IPR027409) - T[158-313] 4.7E-170 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TCPA_HUMAN | 34.413 % | 276 | 7.62E-87 |
| TCPH_HUMAN | 79.749 % | 801 | 0 |
| TCPD_HUMAN | 31.933 % | 254 | 2.53E-78 |