- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S43.g08780.01.t
Possible name(s)
DIXDC1; NAV3; SYNE2
Gene model
Location
S43 [84,971 / 86,823]
Amino acid sequence
Length: 550
>Harore.CG.MTP2014.S43.g08780.01.p
MNRLVVGRLLRLYTIQEVQSNSIRLGSKSEKMLRSVGTKEAQNIQAHQTYVSWVNSQLRK
RKGCQPIKDLKLDLQDGTVLADLIEIVSGEHLKEILRSVATVNDMYHNIEIILEFMRSYG
IRLHHINEIDLVNGNPKTIMRLISALASHFKPSSIRKREIPEQDTSTDTDSNLSFNSVLA
KLNNESRTAWEVNGSAVTIPAISGTDFRSASKDQFSSSSLSNKSSPVLSSTENTPRAKTP
REDRVEDVALFNTKFELDECCEEIASTHVLASHLQHLLLHGSLPQDNCIDNDISGFRCSD
FSDTSPLPQNTNKIKALQSHFDVHNLQCENKKLKAEVLNLRQKYHAAVSAKDTYHLRVKE
LERQVKQYEQKKSPLKTNNGRHPPASEDPAVGDLLHSLRSSFPRHDPKQHVIDTLEEVIS
SISEQSRCRVKDRYLETINKKENVRSLNNNNSSHYSSPVNHKKEQKFTRVIYYRPNHTAP
THATIPKPIGTITLEDFKTVVSHSSRYTYSFKALDPEFGTVKKELALDQDEVPGWEGKIV
AWLDQKEKMI
Nucleotide sequence
Length: 1,653
>Harore.CG.MTP2014.S43.g08780.01.t
ATGAACCGTTTGGTAGTGGGACGCCTCCTTCGGCTTTATACTATTCAGGAAGTACAATCT
AACAGCATACGCCTAGGTTCTAAGTCAGAAAAAATGCTTCGCTCTGTAGGAACAAAAGAA
GCCCAGAATATACAAGCCCACCAAACTTATGTATCTTGGGTAAACAGCCAATTAAGAAAA
CGAAAAGGATGCCAACCTATAAAAGACTTGAAACTCGATCTCCAGGACGGTACCGTACTG
GCTGATTTGATCGAAATTGTCTCTGGAGAACATCTGAAAGAAATCTTGCGTTCGGTGGCC
ACTGTAAATGATATGTATCATAATATTGAAATCATTTTGGAGTTCATGCGTTCTTATGGA
ATTCGTTTGCACCATATAAACGAGATTGATTTGGTGAACGGCAATCCGAAAACAATAATG
AGACTCATTTCTGCCCTGGCTTCACATTTCAAGCCATCTAGCATCAGGAAACGCGAAATA
CCCGAGCAAGACACAAGCACGGATACAGACAGTAACTTGTCTTTCAACTCTGTTCTAGCA
AAGTTGAATAACGAAAGTCGTACCGCTTGGGAAGTCAATGGAAGTGCTGTAACTATCCCT
GCTATTTCAGGAACTGATTTCAGGAGCGCTTCCAAAGATCAATTTTCATCAAGCTCTCTG
TCAAACAAAAGTTCTCCAGTGTTATCTTCCACTGAAAATACACCCAGGGCAAAGACCCCG
AGAGAAGACAGAGTTGAAGATGTGGCTCTCTTCAATACAAAGTTTGAATTGGACGAATGC
TGCGAGGAGATAGCCAGTACGCATGTTCTTGCATCCCATCTCCAACATCTTTTATTACAC
GGATCATTGCCTCAAGATAATTGTATTGATAACGATATAAGCGGTTTTCGGTGTAGTGAT
TTTTCTGACACGTCACCATTACCTCAAAATACAAATAAAATCAAAGCACTGCAAAGTCAT
TTTGATGTACACAACCTCCAATGCGAAAACAAAAAGCTAAAAGCTGAAGTACTGAATCTA
AGACAAAAGTATCACGCAGCTGTTTCTGCCAAAGACACTTATCATCTTCGAGTGAAAGAA
CTGGAGAGACAAGTAAAACAATACGAACAGAAAAAGTCGCCGTTGAAGACGAATAACGGC
AGACACCCACCAGCTAGTGAGGATCCTGCCGTTGGAGATTTACTGCATAGTCTCAGGTCA
AGTTTTCCCAGACACGACCCAAAACAGCATGTCATCGACACCCTCGAAGAAGTAATTTCC
TCCATTTCAGAACAGTCAAGATGTCGCGTCAAAGATCGTTATTTGGAAACGATCAATAAG
AAGGAAAATGTCAGAAGCCTCAATAACAATAATTCTTCGCATTACTCAAGCCCTGTGAAC
CACAAAAAGGAGCAGAAATTCACCAGAGTAATTTATTATAGACCCAACCACACGGCGCCT
ACACACGCGACCATTCCGAAACCAATCGGTACAATTACGCTTGAAGATTTTAAAACTGTT
GTGAGTCATTCCAGTAGATACACGTACAGTTTTAAAGCTTTAGACCCGGAGTTCGGGACC
GTTAAGAAAGAACTCGCTCTTGATCAGGACGAGGTGCCGGGTTGGGAAGGTAAAATCGTT
GCCTGGCTTGACCAGAAAGAAAAGATGATCTAA
| Gene3D |
CH_dom_sf (IPR036872) - T[28-156] 1.6E-27 |
| PANTHER |
Dsh/Dvl-rel (IPR015506) - T[42-370] 1.5E-86 - T[315-544] 1.5E-86 |
| SUPERFAMILY |
CH_dom_sf (IPR036872) - T[43-155] 4.71E-25 |
| ProSiteProfiles |
CH-domain (IPR001715) - T[44-151] 14.325 |
| SMART |
CH-domain (IPR001715) - T[46-149] 9.4E-9 |
| Pfam |
CH-domain (IPR001715) - T[47-151] 1.1E-17 |
| CDD |
CH-domain (IPR001715) - T[48-150] 1.15063E-13 |
| Gene3D |
DIX_dom_sf (IPR038207) - T[460-549] 4.7E-25 |
| ProSiteProfiles |
DIX (IPR001158) - T[465-547] 20.983 |
| SMART |
DIX (IPR001158) - T[465-547] 1.3E-10 |
| SUPERFAMILY |
Ubiquitin-like_domsf (IPR029071) - T[466-544] 3.2E-15 |
| Pfam |
DIX (IPR001158) - T[467-544] 1.1E-21 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DIXC1_HUMAN | 49.153 % | 122 | 1.74E-29 |