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TRANSCRIPT CARD

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  1. EST 'BW407972'
  2. Transcript 'Harore.CG.MTP2014.S4...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S43.g08780.01.t

Possible name(s)

DIXDC1; NAV3; SYNE2

Location

S43 [84,971 / 86,823]

Sequences

Amino acid sequence

Length: 550

>Harore.CG.MTP2014.S43.g08780.01.p
MNRLVVGRLLRLYTIQEVQSNSIRLGSKSEKMLRSVGTKEAQNIQAHQTYVSWVNSQLRK
RKGCQPIKDLKLDLQDGTVLADLIEIVSGEHLKEILRSVATVNDMYHNIEIILEFMRSYG
IRLHHINEIDLVNGNPKTIMRLISALASHFKPSSIRKREIPEQDTSTDTDSNLSFNSVLA
KLNNESRTAWEVNGSAVTIPAISGTDFRSASKDQFSSSSLSNKSSPVLSSTENTPRAKTP
REDRVEDVALFNTKFELDECCEEIASTHVLASHLQHLLLHGSLPQDNCIDNDISGFRCSD
FSDTSPLPQNTNKIKALQSHFDVHNLQCENKKLKAEVLNLRQKYHAAVSAKDTYHLRVKE
LERQVKQYEQKKSPLKTNNGRHPPASEDPAVGDLLHSLRSSFPRHDPKQHVIDTLEEVIS
SISEQSRCRVKDRYLETINKKENVRSLNNNNSSHYSSPVNHKKEQKFTRVIYYRPNHTAP
THATIPKPIGTITLEDFKTVVSHSSRYTYSFKALDPEFGTVKKELALDQDEVPGWEGKIV
AWLDQKEKMI

Nucleotide sequence

Length: 1,653

>Harore.CG.MTP2014.S43.g08780.01.t
ATGAACCGTTTGGTAGTGGGACGCCTCCTTCGGCTTTATACTATTCAGGAAGTACAATCT
AACAGCATACGCCTAGGTTCTAAGTCAGAAAAAATGCTTCGCTCTGTAGGAACAAAAGAA
GCCCAGAATATACAAGCCCACCAAACTTATGTATCTTGGGTAAACAGCCAATTAAGAAAA
CGAAAAGGATGCCAACCTATAAAAGACTTGAAACTCGATCTCCAGGACGGTACCGTACTG
GCTGATTTGATCGAAATTGTCTCTGGAGAACATCTGAAAGAAATCTTGCGTTCGGTGGCC
ACTGTAAATGATATGTATCATAATATTGAAATCATTTTGGAGTTCATGCGTTCTTATGGA
ATTCGTTTGCACCATATAAACGAGATTGATTTGGTGAACGGCAATCCGAAAACAATAATG
AGACTCATTTCTGCCCTGGCTTCACATTTCAAGCCATCTAGCATCAGGAAACGCGAAATA
CCCGAGCAAGACACAAGCACGGATACAGACAGTAACTTGTCTTTCAACTCTGTTCTAGCA
AAGTTGAATAACGAAAGTCGTACCGCTTGGGAAGTCAATGGAAGTGCTGTAACTATCCCT
GCTATTTCAGGAACTGATTTCAGGAGCGCTTCCAAAGATCAATTTTCATCAAGCTCTCTG
TCAAACAAAAGTTCTCCAGTGTTATCTTCCACTGAAAATACACCCAGGGCAAAGACCCCG
AGAGAAGACAGAGTTGAAGATGTGGCTCTCTTCAATACAAAGTTTGAATTGGACGAATGC
TGCGAGGAGATAGCCAGTACGCATGTTCTTGCATCCCATCTCCAACATCTTTTATTACAC
GGATCATTGCCTCAAGATAATTGTATTGATAACGATATAAGCGGTTTTCGGTGTAGTGAT
TTTTCTGACACGTCACCATTACCTCAAAATACAAATAAAATCAAAGCACTGCAAAGTCAT
TTTGATGTACACAACCTCCAATGCGAAAACAAAAAGCTAAAAGCTGAAGTACTGAATCTA
AGACAAAAGTATCACGCAGCTGTTTCTGCCAAAGACACTTATCATCTTCGAGTGAAAGAA
CTGGAGAGACAAGTAAAACAATACGAACAGAAAAAGTCGCCGTTGAAGACGAATAACGGC
AGACACCCACCAGCTAGTGAGGATCCTGCCGTTGGAGATTTACTGCATAGTCTCAGGTCA
AGTTTTCCCAGACACGACCCAAAACAGCATGTCATCGACACCCTCGAAGAAGTAATTTCC
TCCATTTCAGAACAGTCAAGATGTCGCGTCAAAGATCGTTATTTGGAAACGATCAATAAG
AAGGAAAATGTCAGAAGCCTCAATAACAATAATTCTTCGCATTACTCAAGCCCTGTGAAC
CACAAAAAGGAGCAGAAATTCACCAGAGTAATTTATTATAGACCCAACCACACGGCGCCT
ACACACGCGACCATTCCGAAACCAATCGGTACAATTACGCTTGAAGATTTTAAAACTGTT
GTGAGTCATTCCAGTAGATACACGTACAGTTTTAAAGCTTTAGACCCGGAGTTCGGGACC
GTTAAGAAAGAACTCGCTCTTGATCAGGACGAGGTGCCGGGTTGGGAAGGTAAAATCGTT
GCCTGGCTTGACCAGAAAGAAAAGATGATCTAA

InterProScan

Gene3D
CH_dom_sf (IPR036872) - T[28-156] 1.6E-27
PANTHER
Dsh/Dvl-rel (IPR015506) - T[42-370] 1.5E-86 - T[315-544] 1.5E-86
SUPERFAMILY
CH_dom_sf (IPR036872) - T[43-155] 4.71E-25
ProSiteProfiles
CH-domain (IPR001715) - T[44-151] 14.325
SMART
CH-domain (IPR001715) - T[46-149] 9.4E-9
Pfam
CH-domain (IPR001715) - T[47-151] 1.1E-17
CDD
CH-domain (IPR001715) - T[48-150] 1.15063E-13
Gene3D
DIX_dom_sf (IPR038207) - T[460-549] 4.7E-25
ProSiteProfiles
DIX (IPR001158) - T[465-547] 20.983
SMART
DIX (IPR001158) - T[465-547] 1.3E-10
SUPERFAMILY
Ubiquitin-like_domsf (IPR029071) - T[466-544] 3.2E-15
Pfam
DIX (IPR001158) - T[467-544] 1.1E-21

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
DIXC1_HUMAN 49.153 % 122 1.74E-29