- Molecular Tool 'Dll-B-MO (Imai's 25mer MO)' >
- Transcript 'Harore.CG.MTP2014.S9...' >
- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S44.g10299.01.t
Possible name(s)
ITGB1; ITGB2; ITGB3
Gene model
Location
S44 [334,274 / 342,184]
Amino acid sequence
Length: 865
>Harore.CG.MTP2014.S44.g10299.01.p
MKSLLFLWLSTALLYGVFANLCVEKKTKSCGDCMQIAGCGWCDEAKYADNPNLIISRCDL
PENLIARNCSKHRIVNPPSSVKATVDDPHSGVGSSDVGTATQLKPQKFEGELRPGTPVDI
KLSYKQAEDYPVDLYYLLDLSNSMEDDLESLRKLGKQLGESMASITRDFRLGFGSFVDKT
VMPFISTVPNVKKNPCWPKLVCQPTYSFSNDLPLTDNIDDFVTSVNGVSHSSNIDAPEGG
FDAMMQAIVCQNNIQWRKDATHLLVYVTDAVFHYAGDGKLGGIVTPNNGHCYLDGRGRYT
KANEMDYPSVGHLVQKITDFNIQPIFAVTEKVINTYKKLQQLIPKSAVGELSANSSNIIE
LIEGAYNSLKGQVLLEVATPPGIEVIKKVAHCGDGDREGLSCDGVKIGDVVNFTLSVSTT
ECFPGTKKLDVSIFGYNEKVEVTMQSLCECQCNTTDAPSANCSGHGVFDCGGCVCDTGYL
GLECSCDKKDSTAESYIVNCTNPDGEVCGNRGECLCGKCICRQMQNRKIDGKYCECDNTT
CDIINGEYCNGHGLCNCGNCLCEKEWKGDGCECTKDNTGCMDPNDEEAVACHGSGSCDCG
ECKCNITKSGFEYLGTYCEISPQQLCNIHKECVQCLVYGNRKEFEKNDTLCVDCQQYSVN
ILKDEETSKLRESCRAVDSTNDCTFTFWFERRSDTVYIDTNPEKQVCPMYANPMYIIIGI
IAAIVGIGLAILLIWKLLTSIKDAREYKQWRKEVQTAKWETVSDHEHHGNSCEICSIPFS
ILLLGRQSSLQERHFNFPKPDIQGWQANIAVVMTRHLFLSTLGSAIHTRLFSTKCTIKHF
IARTPNGDFSYITKDEFFLCNIFFQ
Nucleotide sequence
Length: 4,735
>Harore.CG.MTP2014.S44.g10299.01.t
TTGTATTAGTATACATATTTAAGTGAATATCACAATGAAATCTTTATTATTTTTGTGGCT
TTCTACCGCCCTATTATACGGAGTATTCGCCAATCTGTGTGTGGAAAAGAAAACAAAATC
ATGCGGCGATTGTATGCAAATAGCTGGCTGCGGATGGTGTGATGAAGCGAAATACGCGGA
CAATCCGAACCTGATCATTTCAAGATGTGATCTTCCTGAGAATCTAATCGCCCGTAATTG
CTCAAAGCACAGAATTGTTAATCCTCCGTCCTCGGTGAAAGCCACTGTTGATGATCCCCA
TTCAGGGGTCGGTAGCTCAGATGTCGGGACTGCTACGCAACTGAAACCTCAAAAATTTGA
AGGAGAGCTCAGACCTGGCACTCCTGTTGACATAAAGCTCTCATATAAGCAAGCAGAAGA
CTATCCCGTCGATCTCTATTATCTGCTCGACCTTTCCAATTCTATGGAAGACGATTTAGA
ATCTCTTCGAAAACTGGGAAAACAACTCGGAGAGAGCATGGCTTCTATCACCAGAGATTT
TCGACTTGGTTTCGGATCGTTCGTTGATAAAACAGTCATGCCTTTCATATCAACTGTGCC
AAATGTGAAAAAAAATCCTTGTTGGCCAAAACTCGTTTGCCAACCAACGTATAGTTTCAG
CAACGATCTTCCACTTACTGATAATATTGATGATTTCGTAACGTCAGTAAACGGTGTGTC
GCATTCATCGAACATTGATGCACCTGAAGGTGGTTTTGATGCCATGATGCAAGCAATTGT
ATGCCAGAATAATATTCAGTGGAGAAAAGATGCTACACATTTGCTGGTGTATGTCACAGA
TGCTGTCTTCCATTACGCTGGCGACGGCAAGCTCGGTGGTATAGTTACCCCTAACAATGG
CCACTGCTATCTTGATGGCCGAGGGAGATATACAAAAGCTAATGAAATGGATTATCCTTC
CGTTGGACATCTTGTACAGAAAATCACAGATTTCAATATTCAGCCGATTTTTGCAGTCAC
GGAAAAAGTCATAAATACTTACAAGAAATTGCAACAACTTATTCCCAAGTCAGCAGTCGG
AGAATTGAGCGCCAACTCGTCCAATATTATAGAACTTATTGAGGGCGCATATAATTCTTT
GAAAGGGCAGGTATTGCTTGAAGTAGCAACACCACCTGGAATTGAAGTAATTAAAAAGGT
TGCTCATTGCGGTGATGGAGATCGCGAAGGCCTGAGTTGTGACGGTGTGAAGATAGGAGA
TGTGGTTAACTTCACGTTGAGTGTTTCTACCACGGAATGCTTCCCAGGCACAAAGAAGTT
GGATGTTTCAATTTTTGGTTACAATGAAAAAGTTGAAGTTACCATGCAAAGTCTTTGTGA
ATGTCAATGCAATACGACTGATGCTCCATCAGCGAATTGCTCTGGTCATGGTGTTTTTGA
CTGTGGAGGCTGCGTGTGTGACACTGGTTACCTCGGCCTTGAATGCTCGTGTGACAAAAA
AGACAGTACGGCAGAGTCATACATTGTCAACTGCACGAACCCTGACGGTGAAGTGTGCGG
CAATCGAGGAGAATGTCTTTGTGGCAAATGTATTTGCAGGCAAATGCAAAACAGAAAAAT
TGATGGAAAATACTGCGAATGTGACAACACAACTTGCGATATTATTAACGGCGAATATTG
TAATGGTCACGGTCTGTGCAACTGTGGCAATTGCCTTTGTGAAAAAGAATGGAAAGGAGA
TGGGTGCGAGTGCACCAAAGACAATACGGGCTGCATGGATCCAAACGACGAGGAAGCTGT
CGCCTGCCACGGTAGTGGTTCGTGCGATTGTGGAGAGTGCAAGTGTAACATCACCAAGTC
TGGTTTTGAGTATTTAGGTACATATTGTGAGATTTCCCCACAACAGCTGTGCAACATTCA
CAAGGAATGTGTTCAATGCCTTGTCTACGGGAATAGAAAAGAGTTTGAAAAAAACGACAC
TCTGTGCGTTGATTGCCAACAATATTCAGTCAATATACTCAAAGATGAAGAAACAAGTAA
ATTGAGAGAGTCTTGCAGAGCCGTCGATTCAACCAATGATTGTACTTTCACTTTCTGGTT
TGAACGTAGAAGCGATACAGTATATATAGATACCAATCCAGAAAAACAAGTGTGTCCAAT
GTATGCCAACCCCATGTATATTATCATCGGTATCATCGCCGCTATTGTCGGTATTGGATT
GGCAATTTTACTTATTTGGAAGCTGCTCACTTCTATCAAGGATGCGAGAGAATACAAACA
ATGGAGGAAGGAGGTTCAGACTGCAAAATGGGAGACTGTGAGTGATCATGAGCATCATGG
GAATTCCTGTGAAATCTGTAGTATACCATTTTCTATTTTGTTACTAGGGAGGCAATCCTC
TCTTCAAGAGCGCCACTTCAACTTTCCAAAACCCGACATACAAGGCTGGCAAGCCAACAT
CGCAGTTGTGATGACCCGGCATTTATTCCTGTCGACTTTGGGTAGTGCCATACACACAAG
GCTTTTCAGTACCAAGTGCACGATAAAACACTTTATTGCAAGAACACCTAACGGCGATTT
TTCATATATTACAAAGGATGAGTTTTTTCTTTGCAATATTTTTTTTCAGTAACAGTTTTA
ACTTCAATTTCAGTGTTTCATAGAATTTCATCTTTTAAATGGAGATATGTTAATTTTTTG
TAGTCGCATAAAAATTCCTGAACGTTAATATTGTTTTATGTTATAAATTCCATATCAATC
CATGCCGCTTGTAAAGTTTTTGTTTCTATCCAGTAAGAGAACCATATAACAAACAGTCAA
CACTTAAGTGTGCTTTAAGCTCTCCTGTTAAAAAATGATATATACCTACTATAAAGTGTC
TTGATTGTTACTTGAACTTTGATGTTTTTTGTACCACGTTTTTAGGCATTGAATTATTTT
TGTTCATAACACATCTATTTTTTATCAATAATACATAAAAAAGTGTAGGATGGTGACCAA
AATTAAGAGATATATTCGGGAACAGTTAAGGAAATCTAAAAGGTTGTTCCCGTATACTGG
TCAAGCAGTATATACAAAATAGACTTTTTCAGAATTTTTTTATCTGGAATTTTAGTATAT
TTTTGTCGTATTGTTAAAACAGCATACACATACATTTCAGTAACGTTTATACCACTAATT
CCTATTATGATATTCCTCATTCCGAGCAAAATTCCTTGTCGCGATTATCCATGCTAGGTT
TATATCTTTCGGTGGTTACCTTGCCTGAATAGCTTTGACTGTATACTGTATCTGCTTTAA
ATTGTTGCTTGATATTGATCTATTTTATTCATCAGGTTCTTGGAACATCATTGTAAACCC
CTCATATGAAAATTTTAAAATTATTCGATTCATTTAATTCTGTTTTATATGAAATAGTTT
AGTATTAGGTTCATCACCAAGGTTCTGTAGCCGCATGTCCAATAATCCTTGTTCCTTATG
GTCAGGTCCATGATAAATTAACTTAATACAATATAAAATATGTAAGTTCTCTTTGTAAGC
CTCATAAATAACTTTTATGGCATGTCAAGTAAAAGAAGTAGGTTGAGAAATTGCATCTAT
AATCAGGAAATCAGTTTCAACTTATTTTTGCTACAACTTTTTCAAATCAATTTTGTTTCA
AGTATACGACGCAGTAGTAATTGGTACTATTTGTATTTGACTTGTATGAGAAAGGTTTCC
TTCACCCAAACAAATTGTAATTATTAAGTAATAATTATGTTTTGAATCTATTTTTCTGCT
ATGAATTTTGAACCCGTCATTATTTTAGTGATCCCATTTTCATTGCAGTTTTATCTCCCA
CAATGTCGCAATGAAATATTCGTGTAGTACTTATGTCCTAATTGTTTTTGCTTTTATCAT
GCCATACATATGTATTTCAGCAATTTTGTTACATTTTCTTGCTGAGAATCATGATTTTTT
TTATAAACCCACATAACTATACAACACGAATGTCTGGTGACTCGATGTTTTTTCATGAAA
TCAGTGTTTGTCTTTGCCTTAACAATTTCCTGAAAAACGCTTAAGGAACTATAGAAACTT
TGTAGTAAATACAGAAATGGTATTTTATTGGTGATAAAATAATTGGTCATATGGTAATTT
ATCAGGTTTTCTCAAACCTTCATATCACTGAATATTATTGATATAATTTGGTAGATGTTA
ATTAATACAAAAGCTGTACCGAATGCAATTATTTTCCCTTCTTACTTGGCGGTAATAGCC
AATAAGCTACAGTGCCTGCCTCTTGTTCTGAGTAAGCTTGTTATTACAGAGATTAGATTA
CCTCAGTACATAATAGTGTGTCCTATCTTAAAAAATGTTAATATTTACACAAAATGGAAC
ATGCATATTTGCCATAGCAAAGCAAGTCAACAAATAGGCTATACATTCTACTAGAGAGGA
ATAACAGGACTGTTTACTTATTGTGTTACTGACCAAGCTAGAAATAATTTCTTTATAATT
TGTTATCGCTGTCACAGTTTCAGGGTCCATGGACTAATTGCATCCATCCAGCAGCAATAC
AGAATAATGTTGCGATACTATCTTGTTGATGTCATTGTGTTTCTAGGTGCTTTTTCTGCA
TTTTTGCTCTTGCCGTTGAGAAATGAATTCATCTATCAGGTAATTAATACATGTATAGTT
ATTTTTGTTGCGTGTTCATTCCTAATAGTGTCTTCATTTAAATTTTCTAAGCGGG
| PIRSF |
Integrin_bsu (IPR015812) - T[1-771] 5.2E-244 |
| PANTHER |
Integrin_bsu (IPR015812) - T[19-765] 2.8E-234 |
| SMART |
Integrin_bsu_VWA (IPR002369) - T[29-450] 5.5E-195 |
| PRINTS |
Integrin_bsu (IPR015812) - T[58-77] 9.3E-100 - T[102-115] 9.3E-100 - T[130-148] 9.3E-100 - T[170-189] 9.3E-100 - T[202-221] 9.3E-100 - T[235-257] 9.3E-100 - T[262-277] 9.3E-100 - T[306-329] 9.3E-100 - T[342-366] 9.3E-100 - T[508-521] 9.3E-100 - T[711-728] 9.3E-100 - T[728-746] 9.3E-100 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[127-370] 1.19E-78 |
| Pfam |
Integrin_bsu_VWA (IPR002369) - T[127-372] 1.8E-106 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[129-370] 1.8E-135 |
| SUPERFAMILY |
Integrin_dom_sf (IPR032695) - T[390-454] 9.94E-10 |
| ProSitePatterns |
Integrin_bsu (IPR015812) - T[591-604] . |
| SUPERFAMILY |
Integrin_bsu_tail_dom_sf (IPR036349) - T[625-708] 1.28E-6 |
| SMART |
Integrin_bsu_tail (IPR012896) - T[626-712] 3.8E-6 |
| Pfam |
Integrin_bsu_cyt_dom (IPR014836) - T[736-761] 6.4E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ITB2_HUMAN | 37.813 % | 496 | 4.16E-164 |
| ITB3_HUMAN | 39.446 % | 494 | 6.15E-163 |
| ITB1_HUMAN | 41.997 % | 530 | 1.07E-176 |