- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S461.g12970.01.t
Possible name(s)
TBX2; TBX4; TBX6
Gene model
Location
S461 [47,117 / 50,342]
Amino acid sequence
Length: 733
>Harore.CG.MTP2014.S461.g12970.01.p
MLDPSQKESSNNTFLSLLVSLIAIKRIQRVDSNRITKQFTEYPKDSFRRKTAMSAFPISD
IGGSWEYSHAPPTATSATGIPGFPEQSVGGLQLPFPGYTYVGASPLTQPRRHFPNSTPVL
GNYAGLSSDREGIATSLNPYISKFSANAQWPISDIHQSKKSVYIPEERDVSNQFQTDKQQ
QQQFMKLPDPQMQVQLCDKELWDQFSRAGTEMIVTKTGRRMFPGYRIKISGLDPTAKYCV
MLDIVNVDDHRYKFQHGEWTVAGRGEPHLPQRFFLHPNSPANGSKWMSEIISFHKVKLTN
SIGRDVDGKIVLNSMHRYQPRVHIVRTDDISSVHMQRLCTFAFPQTVFITVTAYQNSEVT
KLKIDNNPFAKGFREDGARAKKPRNQHNHFSDNDTSPYSEQRRSYYEPGSYTHLPYYNNS
PMNVPSHHHYDNQTMNREFLPEAKRNRIMPESNSIHAPSLSVFHPGNENAVSQWQDVPDL
NEMYNANDNNYNSVANQSIHNVQYTQNGITSHSPVQPVPHDNSFTYYNSSSPSSSDSNQS
NVNASFSVMTTTHASHSINDIMRISEHADVTSPNINIPNTVETNVHSSDSGIGSSPPTPS
DDDASNLIPGTEEIFKDDGKVLDGENLPDMSDLISLTERKESGEANANSHTEDFSRNPAC
QSGDTIESKDIQTLQVASVTDTYSYQKNYVENSSHQSYNNSQEFSYHSNAMPESNCESNV
DPNLDWESNLLTM
Nucleotide sequence
Length: 2,202
>Harore.CG.MTP2014.S461.g12970.01.t
ATGCTTGACCCAAGCCAAAAAGAAAGTAGCAACAATACATTTCTATCCTTGTTAGTAAGT
CTCATTGCCATTAAAAGAATACAGCGAGTTGACAGCAACAGAATCACGAAACAATTTACG
GAGTATCCCAAAGATAGTTTTCGCCGTAAGACAGCTATGTCAGCTTTTCCTATCTCCGAT
ATCGGAGGGAGCTGGGAATATTCGCATGCACCTCCGACCGCAACATCAGCCACAGGAATA
CCAGGTTTTCCAGAACAAAGTGTGGGAGGACTTCAATTACCCTTTCCTGGATATACATAC
GTAGGAGCTTCTCCTTTAACCCAGCCTCGGCGCCACTTCCCTAATTCGACACCGGTTCTA
GGAAATTATGCGGGACTATCAAGTGACAGGGAAGGCATTGCGACCAGTTTGAATCCATAC
ATTTCTAAATTTTCAGCAAATGCTCAATGGCCAATATCAGATATCCACCAGTCGAAAAAA
TCAGTTTACATTCCCGAAGAGAGAGACGTCAGCAATCAGTTTCAAACGGATAAACAGCAG
CAACAGCAATTTATGAAGTTGCCTGACCCGCAAATGCAGGTTCAGCTTTGCGACAAAGAA
CTGTGGGACCAGTTTTCTCGAGCTGGAACCGAGATGATTGTAACAAAGACAGGAAGGAGA
ATGTTTCCAGGATACAGAATTAAGATTTCTGGATTAGATCCAACTGCAAAATACTGCGTT
ATGCTTGACATCGTGAATGTAGATGATCATCGCTACAAGTTCCAGCACGGGGAATGGACA
GTAGCCGGCAGAGGTGAACCTCATTTACCTCAGAGATTTTTCTTGCATCCGAATTCGCCA
GCCAACGGTTCGAAGTGGATGAGCGAAATCATATCATTCCATAAAGTGAAACTGACAAAC
TCGATAGGACGAGATGTTGACGGAAAGATTGTCCTCAATTCAATGCATCGTTATCAACCA
CGCGTTCACATTGTTCGCACCGACGATATTTCAAGCGTCCATATGCAGCGTCTCTGTACA
TTTGCATTTCCGCAGACAGTTTTCATCACAGTAACTGCATATCAAAATTCAGAGGTTACG
AAACTCAAGATCGATAACAACCCATTTGCTAAAGGATTCAGAGAGGACGGAGCCCGTGCT
AAGAAACCCAGAAACCAGCACAATCACTTCAGCGATAACGATACAAGTCCTTATTCTGAA
CAGAGAAGAAGTTATTATGAACCCGGAAGCTACACGCATTTGCCCTACTATAATAATTCT
CCAATGAATGTACCGAGTCATCATCACTATGACAATCAGACAATGAATAGAGAATTTCTT
CCCGAAGCAAAAAGAAATAGGATAATGCCTGAATCCAATTCAATACACGCGCCATCTTTG
AGCGTTTTCCATCCTGGCAACGAAAATGCTGTATCACAATGGCAGGATGTCCCGGATTTA
AATGAAATGTACAACGCTAATGATAATAATTACAACAGTGTAGCAAATCAGTCCATTCAT
AACGTCCAATACACCCAGAACGGCATCACGTCCCACAGCCCAGTACAACCAGTTCCACAC
GATAACAGCTTCACTTACTACAACAGCTCCTCACCATCATCATCAGACAGTAACCAATCG
AACGTAAACGCTTCATTTTCGGTGATGACGACAACGCATGCGTCACACAGCATAAATGAC
ATCATGAGAATATCCGAGCACGCTGATGTTACAAGTCCAAATATAAATATACCTAATACA
GTCGAAACCAATGTTCACTCATCAGATAGTGGCATTGGATCATCACCACCTACACCGTCG
GACGATGACGCTAGCAATCTGATACCGGGAACCGAAGAAATTTTCAAAGATGATGGGAAG
GTATTAGACGGGGAAAATCTTCCTGACATGTCAGATCTTATCAGCCTGACAGAAAGAAAG
GAAAGCGGTGAAGCAAATGCTAACTCCCATACTGAGGATTTCTCAAGAAATCCTGCATGC
CAAAGCGGTGACACGATAGAATCCAAGGATATTCAGACCTTACAAGTAGCGTCAGTGACA
GACACCTATAGCTACCAAAAAAATTACGTTGAAAACAGCTCTCATCAAAGCTATAACAAT
TCACAAGAATTCTCATATCATTCAAATGCCATGCCTGAATCAAACTGTGAAAGCAATGTG
GATCCAAATCTTGACTGGGAAAGCAATTTACTGACAATGTGA
| PANTHER |
TF_T-box (IPR001699) - T[144-711] 2.2E-115 |
| Gene3D |
T-box_sf (IPR036960) - T[189-381] 2.9E-85 |
| CDD |
TF_T-box (IPR001699) - T[191-379] 1.91539E-117 |
| SMART |
TF_T-box (IPR001699) - T[191-380] 6.2E-122 |
| SUPERFAMILY |
p53-like_TF_DNA-bd (IPR008967) - T[192-375] 7.08E-75 |
| Pfam |
TF_T-box (IPR001699) - T[194-375] 3.6E-77 |
| ProSiteProfiles |
TF_T-box (IPR001699) - T[196-375] 75.45 |
| ProSitePatterns |
TF_T-box_CS (IPR018186) - T[201-220] . - T[275-293] . |
| PRINTS |
TF_T-box (IPR001699) - T[209-233] 7.8E-41 - T[274-287] 7.8E-41 - T[291-300] 7.8E-41 - T[311-325] 7.8E-41 - T[346-359] 7.8E-41 - T[367-375] 7.8E-41 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TBX6_HUMAN | 51.531 % | 237 | 8.99E-71 |
| TBX2_HUMAN | 54.639 % | 246 | 2.7E-71 |
| TBX4_HUMAN | 54.595 % | 234 | 1.57E-68 |