- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S48.g06803.02.t
Possible name(s)
SLC6A1; SLC6A5; SLC6A9
Gene model
Location
S48 [273,358 / 285,214]
Amino acid sequence
Length: 584
>Harore.CG.MTP2014.S48.g06803.02.p
MDTENGTARPLVGNGSEENGDENVSSSNSSVDSTVRETWDRKLDFMLSCIGYAVGLGNIW
RFPYLCYKNGGGAFLIPYLIFLLICGIPLFFLELSFGQFGALGPVAIWKIAPLFKGVGYA
MMMISFMVCVYYNVIIAYSLHFIFNSMQSVLPWSTCDNDWNTEFCRNEKLANNATAYLAP
DWTNISCGNGQGWFNTSAKTTMVQSLNATINGSCVNFTTSAQEYFTRRVLRLTDNIDEMG
SIQWELCGFLALAWVIVFICLFKGVKWSGKIVYFTATFPYVVLLILLVRGVMEEGAMLGI
KYYLLPQFDRLFDIKVWIEAAVQIFYSLGAAYGVILSYSSLNNFKNNVYRDAITICCINC
ATSILAGLVVFTVLGSLAFQTDKNITQVVDEGAGLAFVAYPAAVANLPVSPLWAFLFFFM
LLNLGLDTVFSFYIAVPNKLNSIADYNLRIVSANTVCTKLITRLVGYKSLINISQQFDLN
YGTCKDRKNTKFHNSHVYNRLTRHLTADALDYYCYMVHKFRQLFLQIKQWGCMNFFYNLL
NISVFQVSSFSTIFYIYASQSYALYQFVCFVNRHCFVFIYSISL
Nucleotide sequence
Length: 3,790
>Harore.CG.MTP2014.S48.g06803.02.t
AGTTCTAGATCGGATTATAAAGCCTGTATACCAGTAAATCTGTTTACTAGAAAATTGCGA
TTCAGCAGCATTGTGTGAGCAATCAAAAGAAAAATGGACACCGAAAACGGAACAGCAAGG
CCTCTGGTGGGGAACGGCAGCGAAGAGAATGGAGACGAAAACGTGTCATCAAGTAACAGC
TCTGTTGACTCAACGGTTAGAGAAACGTGGGATAGGAAACTAGATTTTATGCTATCGTGT
ATTGGATACGCGGTTGGTCTCGGTAACATCTGGAGATTTCCTTATCTCTGTTACAAAAAC
GGAGGAGGCGCTTTCCTAATTCCGTACTTGATATTTCTCCTCATTTGTGGTATTCCTCTA
TTCTTTCTCGAACTATCGTTTGGTCAGTTTGGAGCACTCGGACCAGTTGCCATATGGAAA
ATTGCACCTTTATTCAAAGGCGTTGGCTATGCAATGATGATGATTTCTTTCATGGTGTGC
GTATACTACAACGTTATCATCGCCTACAGTCTCCATTTTATATTCAATTCGATGCAATCC
GTGCTTCCGTGGAGTACCTGCGACAACGACTGGAATACTGAGTTCTGTCGCAATGAAAAA
CTTGCTAATAATGCCACTGCTTACTTGGCTCCGGATTGGACGAACATATCGTGTGGCAAC
GGGCAAGGATGGTTTAATACGAGTGCAAAAACGACTATGGTACAATCGCTGAACGCCACA
ATCAACGGCTCTTGCGTTAATTTTACAACGTCTGCCCAGGAGTATTTCACACGACGCGTT
CTACGACTTACTGATAATATCGATGAGATGGGAAGTATTCAATGGGAGCTCTGTGGTTTC
TTGGCCTTGGCATGGGTCATCGTATTTATATGCTTATTCAAAGGAGTGAAATGGTCCGGA
AAGATCGTTTACTTCACGGCAACTTTCCCTTACGTCGTCCTCTTAATTTTGCTCGTTCGG
GGCGTTATGGAGGAAGGTGCGATGCTTGGTATAAAATATTATCTACTGCCCCAGTTCGAC
CGACTTTTTGACATCAAGGTATGGATCGAAGCAGCGGTTCAAATATTCTATTCTCTTGGC
GCTGCCTACGGTGTTATTCTGTCCTATTCTTCGCTGAATAATTTCAAAAACAACGTCTAT
AGGGATGCGATTACCATATGTTGTATAAACTGCGCAACGAGCATACTGGCTGGCTTGGTT
GTCTTCACTGTACTCGGATCGTTAGCGTTCCAGACTGACAAAAACATTACACAAGTCGTC
GATGAAGGTGCCGGTCTTGCTTTCGTTGCTTATCCTGCTGCTGTCGCCAATCTTCCCGTC
TCACCGTTATGGGCCTTCTTGTTTTTCTTCATGTTATTAAATTTGGGATTGGACACTGTC
TTTTCTTTCTATATAGCAGTACCGAATAAATTGAATTCTATAGCAGATTATAATTTGCGA
ATCGTCTCGGCAAACACGGTATGTACCAAATTAATAACTAGGCTGGTTGGTTATAAAAGT
TTGATAAATATTTCTCAGCAATTTGATCTGAATTATGGAACATGTAAGGACAGAAAAAAT
ACCAAATTTCATAATTCTCATGTTTATAACAGGTTAACGAGGCATCTGACTGCAGATGCC
CTTGATTATTATTGTTACATGGTCCATAAATTCAGACAACTTTTTTTGCAAATCAAACAA
TGGGGTTGCATGAACTTTTTCTATAACCTTTTGAACATTTCTGTGTTTCAGGTTTCAAGC
TTCAGTACAATTTTTTACATATATGCGTCACAGTCGTACGCCTTATATCAGTTTGTGTGT
TTTGTAAACAGACACTGCTTTGTGTTTATTTATTCCATCAGTCTATGATTCAATGCACAA
ACCAGCCGCGCCTAGTTGGGAGTAGTAGCAGGCATTGCCATCTGCACTAGGATGTTTGGG
ATGATCGAAGCCGTTGTGAAAGGCTTACTTGATGAATTCCCCATTTTGCGACGTAATAAG
GTCAAGTTTCTCGCTGGTTTATGTATGTTGCAGTTTTTGCTGGCATTGCCCATGGTGACC
GAGAGCGGAATGTATTGGTTGACAGTTATTGACTGGTATTGTGCTGGGCTCTCTTTGATG
GTTGTCGCCTTTCTTGAGATAGTGTGTATTGCCTGGGTGTATGGTGCTGACAGATTCATT
TATGACATTTCATGCATGATCGGGCATAAACCTTTCGGTTGGCAGTTTTGGAAAATCATG
TGGTGCTTTGTTACTCCATTTTGCATCTTTTGCCTTATGTTGGCAAATCTGATCAACTAT
TCAAATGCTTCGTACAATGGAGTCAAGTTTCCTATGTGGGCCGATGCATTTGGATGGATG
ACATCGTTTGCTTCTATTTTGCTGATCCCAAGTTGGGCCGTGTATCAATTGTGTACACAT
CCTAGAGCCAAAGGATCGATTATACAGAGAATTAAAGCACTTCTGAAGCATGATGCGGAC
TGGGGTCCCCGTGAACTAAACATCCCATACAAATACAGGAAAGAGCTCAGTTCCCTGAGT
AAAATTAAAAAGGATGAGTCAAATACAATGATGGAACCACTGAATTGTTGCAAAGATAAC
CATAGCAGCTGTTCAGTTTCATCGGATTCGGGGATGCCTTCAAAGTGTGACCCACCGTCT
TACAATGACGCTACGGTGTTGCCGTGATCAGTATTCCACAGGCTAATTGCGCTGAATGAT
ATACGTTTTGATCAGTGCAAAGTTGGCTTTGTGGCAGATGTAGAAAGGTCTTACCTCGGA
TTTTTGGATTTCATGTACAGAGTAAAAAGATTCTTATTGACATTTTTTGGTATCAATGAA
ATGTGCTTGTTTTCAAAATTATAATAAATTATTGCCACCTCAATTATTATTACAGTAAAT
TCAGAAAGATTTGATGATATTTTCCGAATAAATTGAAGTAAATTACTCCTCGCAATACAA
TACTCGTGGAGAGGATGCGAAATATGAATTCAGAGAATTGAAATTAAATACAATGAGAAA
TTAAATTAGAATAAGAGAACCTTATTTCTCGCTCTCAAAATTATACTCGCTTGGAGCACG
CAATCTTGTCATATTGTATGGTCATTGCAATTATATGTACTATTGTGAGTTTTTTGAATT
TCAAATACTTGCTTTATATTTTCGTCTTACAACTTCTGCCTTCTTCCTTGAGTTGTCATT
TTAAGAATATTTTAATTTGGTTTTGAATATGACATACAGAAATGAACAGAATCCTTTAAC
AATGCAAAAGCGTGTTAGATATAATACACGATCGTCCTGCAATGGCAGTATTTTTGAGTT
GATGTGAGCAAGTAACACCGAATATGTCCCATAACAGAATTTAAGGATCCATATATTGTT
ACTAAAATCTGCTTTGGATTCTCAAAATACAGTTTTCCCATTGGTTGTTCTGCCGGCAAT
GTCTGTCCATTGTTACGCTATATTCATTTATTACAACAGGATAGTGTTACGTTACGTTAG
TAACCTATTTATTTTCAATAAATTATACATTTTTTTTACTTCGTGCTATCATGTCGATTT
TAGGTCTGAGCCGCCATTTGAATTTATGTTCTTGTGTGTTGAATGAAGGTCTTGTAATAG
TTCCTGCCTCGATTGAAGCCTGCCAACTCAACTTGCAAATTAAGACAAAGGGTTGCTTCC
AGGAGGGTACTAAATGAAGTGTCTTCTTGGGCCACGGAACTGTTTTTCTGGCACTTTATT
TAATATCATAGTAGGCGTACAACATGATTTACAACCACCTGTTTACATAGTGGTAAAGCT
TCGGTTCAAT
| PANTHER |
Na/ntran_symport (IPR000175) - T[34-441] 8.5E-163 |
| ProSiteProfiles |
Na/ntran_symport (IPR000175) - T[35-445] 75.147 |
| SUPERFAMILY |
SNS_sf (IPR037272) - T[36-165] 2.09E-130 - T[219-476] 2.09E-130 |
| Pfam |
Na/ntran_symport (IPR000175) - T[36-439] 4.0E-152 |
| PRINTS |
Na/ntran_symport (IPR000175) - T[44-65] 9.0E-65 - T[73-92] 9.0E-65 - T[116-142] 9.0E-65 - T[271-288] 9.0E-65 - T[353-373] 9.0E-65 - T[407-426] 9.0E-65 |
| ProSitePatterns |
Na/ntran_symport (IPR000175) - T[60-74] . - T[142-162] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SC6A5_HUMAN | 48.046 % | 406 | 1.09E-132 |
| SC6A9_HUMAN | 48.492 % | 395 | 9.72E-130 |
| SC6A1_HUMAN | 43.202 % | 390 | 5.76E-129 |