- Transcript 'Phmamm.CG.MTP2014.S2...' >
- Clone 'cima822782' >
- Clone 'cien45153' >
- Transcript 'Cisavi.CG.ENS81.R44....' >
- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S4.g03418.01.t
Possible name(s)
CCNA1; CCNB1; CCNB2
Gene model
Location
S4 [727,442 / 730,621]
Amino acid sequence
Length: 453
>Harore.CG.MTP2014.S4.g03418.01.p
MLSYSNYIEVRGALAVHILFLRDISTPFEATMTSLATTRNVLTSNFDQENPGKSKGGAII
KKRTAAPVTRSAFVALSNNVTGQRVSQKGNLKPELKKPLIRQAAAANLKAKSNDQLKREL
KALPKSQTILKVKEAKIQNGSTSPTPMEMGTPNDKLKLLQKNIFDRTDKPEVEDIDENDT
ENPQLCSEFVNDIYQYMLYLEGEFPVKKHYLKDTTLKPRMRSILVDWLFQVHHRFQLLQE
TFYLTIAILDRFLQLEPVARTKLQLAGVTAMLISSKYEEMYAPEVNDFVYITDQAFTRSQ
ILQMEIVMLKKLDFDLGRPLPLHFLRRNSKAGQVDANQHTLAKYLMELSMVDYEMCHVAP
SKVAAAALCLSIKLLEDTDWTPTLEHYSQYSQAQLWPVVSHLAKNLKSAETNTYLQAIRT
KYSSHKAFKIAQIAEVNSSLVIELSEKAASITL
Nucleotide sequence
Length: 1,653
>Harore.CG.MTP2014.S4.g03418.01.t
ATGCTATCATATAGCAATTATATTGAGGTGCGTGGAGCCCTTGCAGTTCATATTCTCTTC
CTTCGAGATATCAGTACTCCGTTTGAAGCAACAATGACGAGCTTGGCCACAACAAGAAAT
GTTTTAACTAGTAACTTCGATCAAGAAAATCCTGGCAAATCAAAAGGAGGAGCCATCATT
AAAAAAAGAACAGCAGCACCAGTTACCAGATCTGCATTTGTTGCTTTGAGCAATAATGTG
ACAGGCCAACGAGTTTCTCAAAAGGGCAATTTAAAACCAGAATTGAAGAAACCATTGATA
AGGCAAGCAGCTGCTGCCAACTTGAAAGCGAAATCCAACGATCAACTGAAACGCGAGTTA
AAAGCCCTTCCGAAGAGTCAAACTATCCTGAAAGTTAAAGAAGCAAAAATCCAAAATGGA
TCGACTAGTCCAACGCCGATGGAGATGGGTACTCCAAATGACAAGCTCAAGCTCCTTCAG
AAGAACATTTTTGACAGAACTGACAAACCAGAGGTCGAGGACATTGACGAGAATGATACA
GAAAATCCTCAGCTCTGTTCAGAATTTGTCAATGATATTTATCAATACATGTTGTACCTG
GAAGGGGAGTTTCCCGTTAAAAAACATTACCTGAAAGACACCACTTTAAAACCACGAATG
CGTTCGATCCTTGTCGATTGGTTGTTCCAGGTTCATCACAGATTTCAGTTATTGCAGGAA
ACCTTTTATCTTACAATAGCTATCCTGGATAGATTCCTGCAGTTGGAGCCTGTTGCTAGA
ACAAAATTACAACTGGCTGGTGTCACAGCAATGCTGATATCTTCAAAATATGAGGAAATG
TATGCACCAGAGGTCAATGATTTTGTGTACATCACTGATCAAGCATTCACCAGGTCCCAG
ATTTTGCAAATGGAAATTGTCATGCTGAAAAAATTGGATTTTGATTTAGGTCGTCCACTC
CCTTTGCACTTCTTAAGACGTAATTCCAAAGCTGGGCAGGTTGATGCCAATCAACATACT
CTTGCAAAATATTTAATGGAATTGTCAATGGTAGATTACGAGATGTGCCACGTCGCTCCA
TCAAAAGTGGCTGCGGCAGCGCTTTGTCTATCTATCAAGCTTCTTGAAGATACTGATTGG
ACACCAACATTAGAACATTACAGCCAGTATTCACAAGCACAGTTGTGGCCTGTGGTGAGT
CACTTAGCAAAAAACCTGAAATCCGCAGAAACCAATACCTACCTTCAAGCTATTCGCACA
AAATACAGCAGTCACAAAGCATTTAAAATTGCTCAGATAGCGGAAGTGAATTCCTCATTG
GTCATAGAATTGTCCGAGAAGGCAGCCAGCATAACGCTTTGATTATCGACAAACCAGCAA
AGCGCAGCTGACTAATTTTACATAATGATCATGTTGGTTTGGCAACGCAGGCCGCCGGGC
AGACTTAGATGTTTGTGCAATCAGGAGTGATGAATATTCTTGTGTATAAATGTTTTACCT
TTTGACCCTGTTGAGCTGGGTTGCTCCTGTAATTGAACTGGAATCTTTAGTTTTCTTATT
CTTTCGCTATGTCCTGATGTATTGTAACGTGGATACTTTTTATTCTTTTGTGTTTTTATC
AATAAAATATCCTAAACATGCAAAAAAAAAAAA
| SUPERFAMILY |
Cyclin-like_sf (IPR036915) - T[181-316] 1.36E-47 - T[319-435] 2.45E-36 |
| Pfam |
Cyclin_N (IPR006671) - T[192-316] 1.2E-42 |
| CDD |
Cyclin-like (IPR013763) - T[220-309] 1.00353E-20 - T[317-394] 4.41386E-16 |
| ProSitePatterns |
Cyclin_N (IPR006671) - T[221-252] . |
| SMART |
Cyclin-like (IPR013763) - T[226-310] 2.4E-23 - T[323-404] 8.2E-19 |
| Pfam |
Cyclin_C-dom (IPR004367) - T[319-433] 4.0E-33 |
| SMART |
Cyclin_C-dom (IPR004367) - T[319-436] 1.1E-33 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CCNB1_HUMAN | 51.246 % | 315 | 9.76E-104 |
| CCNB2_HUMAN | 50 % | 329 | 7.92E-110 |
| CCNA1_HUMAN | 40.486 % | 169 | 2.37E-47 |