- Transcript 'KH2012:KH.C3.324.v1....' >
- Transcript 'KH2012:KH.C1.1014.v1...' >
- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S4.g06598.01.t
Possible name(s)
ARNT; ARNT2; ARNTL
Gene model
Location
S4 [593,619 / 598,958]
Amino acid sequence
Length: 590
>Harore.CG.MTP2014.S4.g06598.01.p
MESGSMGKGSDPNLDDMSQADKERFARENHSEIERRRRNKMTAYITELSDMVPSCSALAR
KPDKLTILRMAVSHMKQLRGAMSGGAMDSAYKPAFLTDQELKHLVLESADGFLFVASCET
GLIIYVSDTVTAVLNQAHSDWIGHSLYDLIHSDDVTKVQEQLNISDTQNTGRILDMKTGT
VKKEGQQSSVRLCNGSRRAFICRMRCGKMQVSSSTPRYQHARNTLGAIGKDEDPHSVMHV
TGYIKPWPPSGYSGVDGQPDTMEDMSTQNQNASSNYCLVGIARLQITSHPSFGDLNPTMD
KSEFVSRHNFENTYTFVDMRVTNILGYQPQDLLGKKPAEFYHPSDVEQVEEIFNQVVLRK
GQVFSMMHRFRAQNGEYVLMRTSSFAFQNPYNNEVEYIVCTNSLVKPPQAQGQGMGDVTE
QKSNPIFNHPGNDKALQGGIEQFGGKPTQSPDVQSPTTTLNYPPQNIGNHPQAAQMASQF
SPVSGATIGQVPWNNSGVSAGESVNPQFSQSLMDHYQGVLAAQQPHSGMFTTGVSAYQAS
PPVPGFPADGRQQETYPTQETMMSMLEQGGNTYPQEEFNDLNMFPTFSES
Nucleotide sequence
Length: 1,828
>Harore.CG.MTP2014.S4.g06598.01.t
AGCATTCTTACATATACCATTTAAAAAAACCTGATTTTGCCTACAAACAGATAAGATGGA
GTCGGGCTCCATGGGAAAAGGAAGCGATCCAAACTTGGATGATATGTCGCAAGCGGATAA
GGAAAGGTTTGCGAGAGAGAATCATTCAGAGATTGAAAGGAGGCGAAGAAATAAGATGAC
TGCATACATCACAGAACTGTCTGATATGGTACCAAGTTGCAGTGCTTTAGCAAGAAAACC
TGACAAACTCACCATACTTCGCATGGCTGTGTCACACATGAAGCAATTACGTGGAGCTAT
GTCAGGCGGTGCAATGGACAGCGCCTATAAGCCTGCCTTCCTTACGGATCAAGAACTGAA
ACATCTTGTACTTGAATCTGCGGACGGTTTTCTTTTTGTTGCGTCGTGTGAAACGGGACT
AATCATTTACGTATCTGACACGGTCACAGCTGTGTTGAACCAGGCACACTCAGACTGGAT
TGGACACAGTTTGTACGATCTCATCCATTCTGATGATGTCACCAAAGTTCAGGAACAGCT
GAATATCAGTGACACTCAAAATACTGGTCGCATCCTCGATATGAAGACTGGAACCGTGAA
AAAGGAAGGTCAGCAAAGCTCCGTCAGATTATGTAATGGATCACGACGTGCTTTCATTTG
TCGCATGCGCTGTGGAAAAATGCAAGTTAGCAGCTCAACACCTAGATACCAACATGCCAG
AAACACTTTGGGAGCAATTGGAAAGGATGAAGATCCACACTCTGTAATGCATGTGACTGG
CTACATCAAACCATGGCCTCCATCTGGGTACAGCGGTGTTGACGGTCAACCGGATACAAT
GGAAGATATGTCTACACAAAATCAAAATGCCAGTAGTAATTATTGTTTGGTTGGAATTGC
ACGTCTTCAGATCACCAGCCATCCAAGTTTTGGTGACCTCAACCCAACCATGGACAAAAG
TGAATTTGTATCACGTCATAATTTCGAAAACACTTATACTTTTGTCGACATGCGCGTTAC
AAACATTCTCGGGTACCAACCACAGGATTTACTCGGGAAAAAGCCAGCTGAATTTTATCA
TCCTAGTGACGTTGAGCAAGTTGAAGAAATTTTCAACCAAGTTGTGCTGCGAAAAGGCCA
GGTGTTCTCAATGATGCATCGGTTCCGTGCACAAAATGGAGAGTATGTGTTGATGAGGAC
AAGTTCATTTGCATTCCAGAATCCATACAACAATGAAGTTGAATATATTGTGTGTACAAA
TTCTCTTGTAAAACCACCACAAGCACAAGGTCAGGGTATGGGTGATGTCACAGAACAGAA
GTCAAATCCAATTTTTAACCACCCTGGAAATGATAAGGCTTTGCAGGGAGGCATTGAACA
GTTTGGAGGTAAACCAACACAGTCACCTGATGTGCAGTCACCTACAACGACACTGAACTA
CCCTCCACAGAATATAGGCAACCATCCGCAGGCTGCACAGATGGCGTCCCAGTTTAGTCC
AGTGTCTGGAGCTACGATTGGTCAGGTTCCTTGGAACAATTCTGGAGTTTCTGCTGGTGA
ATCTGTGAATCCTCAGTTTTCACAATCGCTCATGGATCATTATCAAGGTGTATTAGCTGC
TCAGCAGCCTCACAGTGGAATGTTTACTACTGGTGTTTCAGCCTATCAGGCATCACCTCC
AGTGCCAGGATTTCCAGCGGATGGACGGCAACAAGAAACCTATCCAACACAGGAAACAAT
GATGTCGATGCTTGAACAAGGCGGGAACACATATCCCCAGGAAGAATTTAATGATCTGAA
CATGTTCCCCACCTTTTCAGAATCATGA
| Gene3D |
HLH_DNA-bd_sf (IPR036638) - T[15-81] 1.4E-21 |
| ProSiteProfiles |
bHLH_dom (IPR011598) - T[25-78] 16.971 |
| CDD |
bHLH_dom (IPR011598) - T[27-79] 5.5018E-15 |
| Pfam |
bHLH_dom (IPR011598) - T[27-78] 6.8E-15 |
| SUPERFAMILY |
HLH_DNA-bd_sf (IPR036638) - T[27-111] 2.88E-15 |
| SMART |
bHLH_dom (IPR011598) - T[31-84] 3.3E-13 |
| PRINTS |
Nuc_translocat (IPR001067) - T[40-55] 1.3E-73 - T[60-80] 1.3E-73 - T[91-114] 1.3E-73 - T[116-135] 1.3E-73 - T[148-166] 1.3E-73 - T[194-207] 1.3E-73 - T[235-254] 1.3E-73 - T[303-320] 1.3E-73 |
| ProSiteProfiles |
PAS (IPR000014) - T[98-169] 11.488 - T[315-360] 13.612 |
| SMART |
PAS (IPR000014) - T[100-167] 9.2E-9 - T[290-358] 0.082 |
| Pfam |
PAS_fold (IPR013767) - T[104-206] 3.1E-10 |
| CDD |
PAS (IPR000014) - T[109-198] 1.6065E-8 - T[302-399] 1.01934E-12 |
| SUPERFAMILY |
PAS-like_dom_sf (IPR035965) - T[110-164] 2.65E-12 - T[191-226] 2.65E-12 - T[303-403] 2.37E-23 |
| TIGRFAM |
PAS (IPR000014) - T[314-398] 9.4E-8 |
| SMART |
PAC (IPR001610) - T[365-408] 0.006 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ARNT_HUMAN | 61.055 % | 499 | 8.68E-169 |
| ARNT2_HUMAN | 57.895 % | 477 | 4.1E-161 |
| BMAL1_HUMAN | 42.298 % | 321 | 6.32E-102 |