- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.C2.236.v3....' >
- Transcript 'KH2012:KH.C8.87.v1.A...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S4...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S4.g14081.01.t
Possible name(s)
RBM41; RNPC3; SNRPA
Gene model
Location
S4 [275,474 / 280,163]
Amino acid sequence
Length: 527
>Harore.CG.MTP2014.S4.g14081.01.p
MKTQSLVNSKSSYEILPEIMETRQSNVLYVKHLPCSLTSTEKKELLEYFGAVEVRVMPDR
GKFKHSAFATFKDTEKAKEAISRLHQIEILNSVISVEFAHSSLKKLRELVEDKSERGEEP
LSKSQKDANKKADVETLGKKSNAEILPPIAPHFGLHYPANPGLKYKYPPPNSDILINICS
ALITVPKLYTQVLHLMNKMNLVPPFSSATTIPQMILNHIHPSHVGISTCASHKRKMKLSR
NYALNNSEMSESESEIGTDESEGDYCDRIQISANSLVPERVLNARKRKKNQAPGEITKKR
RLQQFITPTVTNDQTTKKEVSNMADVFGENIAIGIGKKIEVKVPSAIVSHDNISSQTKRE
DSSYKNREEQPTNKIDAAFGKFSPVRSNDDHGENENEESEGRNMLTDFITPKQLETGQLS
RKEISNSSIFKKYNKGDPTCRLYIKNLSKKVTEKDLKFVYGFFVNFKNETEKNMFDVRVM
TQGRMKGQAFVGLPSVEIASKALEATNGYQLMNKPMIVQFARSAKPK
Nucleotide sequence
Length: 3,032
>Harore.CG.MTP2014.S4.g14081.01.t
AACATGGCCACACACGATTAGCTGAATGAATGAAAACACAGAGTTTAGTTAATAGTAAGA
GTTCGTACGAAATTCTACCCGAAATAATGGAAACAAGGCAGAGTAACGTTTTGTACGTGA
AGCATCTTCCATGTTCCCTGACCAGCACCGAGAAAAAGGAATTGCTCGAATATTTTGGAG
CTGTCGAAGTTCGAGTGATGCCTGACAGAGGAAAATTCAAACATTCTGCTTTTGCCACTT
TCAAAGATACTGAAAAAGCTAAAGAGGCAATTTCACGTCTTCATCAAATTGAAATATTGA
ACTCTGTGATAAGCGTGGAATTTGCACACTCCTCATTGAAGAAACTTAGGGAGTTGGTAG
AAGATAAGTCAGAAAGAGGAGAAGAACCATTGAGTAAATCACAGAAAGATGCCAATAAAA
AAGCAGATGTGGAAACATTAGGGAAAAAGTCGAACGCAGAAATCCTTCCACCTATTGCTC
CACATTTTGGTTTGCATTATCCAGCCAATCCTGGTTTAAAATATAAATATCCGCCACCTA
ACTCAGATATTCTCATTAACATATGCTCTGCCTTGATCACCGTCCCGAAACTGTACACTC
AGGTTCTTCATCTAATGAATAAAATGAATTTGGTTCCACCTTTTTCTTCTGCAACAACTA
TACCTCAGATGATTTTAAACCACATTCACCCCTCACACGTTGGAATTTCAACATGTGCGT
CACACAAAAGAAAAATGAAACTGTCCAGAAACTACGCTTTAAACAATTCAGAAATGTCAG
AATCAGAGTCGGAAATTGGAACAGACGAATCTGAAGGGGATTATTGCGATAGAATACAAA
TAAGTGCAAATTCTCTTGTACCAGAAAGAGTATTAAATGCAAGGAAGCGCAAAAAAAACC
AAGCACCCGGCGAAATCACAAAGAAGCGTAGATTACAACAATTTATTACTCCTACCGTGA
CTAATGATCAAACCACGAAAAAAGAGGTCTCAAACATGGCTGATGTTTTTGGTGAAAATA
TTGCAATTGGCATTGGGAAGAAGATTGAAGTTAAAGTTCCTTCTGCTATCGTATCGCATG
ATAACATAAGCTCCCAGACTAAGCGTGAAGATTCAAGTTATAAAAACAGGGAAGAACAAC
CAACAAATAAGATTGATGCAGCGTTTGGAAAATTTTCTCCTGTGAGATCTAATGATGACC
ATGGTGAAAATGAGAATGAGGAGAGTGAAGGTAGAAATATGCTTACTGACTTCATTACAC
CAAAACAATTGGAAACCGGTCAGTTATCTAGAAAAGAAATATCTAATTCCTCAATCTTCA
AAAAGTACAATAAAGGAGACCCAACCTGTCGCTTGTACATTAAGAACCTTTCGAAGAAGG
TCACAGAGAAGGATCTTAAATTCGTCTACGGCTTCTTTGTCAACTTTAAAAACGAGACAG
AGAAAAATATGTTTGATGTACGAGTTATGACACAGGGGAGGATGAAGGGACAAGCGTTTG
TTGGTCTACCAAGCGTGGAAATTGCTTCCAAAGCACTGGAGGCAACAAATGGATATCAGT
TAATGAACAAGCCAATGATCGTTCAGTTTGCAAGATCTGCTAAACCAAAATGACATAAAA
TAAAATGTTTACGATGAACGATTGTTAATAATACTTTCTAGATAGAACCAAGCATGTAGT
GAACTAATCGAATTTCAATACATGCTTTTTTATTCAAAATAGGTTTCATACACATTCAGG
CTAAGTAAATATACTGCAAAAACTGCTTTTTAGGGTCGCTTAGTATTACTTCAGAATAAA
TAAATAGTATTTGGAAGATAACAGGTACTAATATTTGTGCTAAGTTGTGAATAACTATAG
TGGAGCTAATTATTTTTTAGTTATAAATATAAGATATTCTGCTATGCAAGTCATTTTCTA
CCATGTCTTAAACTTAGTAAAGGTACCAATGGATCGATTGCAGCCTTTTCCAGTTTCGAT
TTCAATGTTATCAATGCAGGAATATCTGTGATTTTTTTCCATAGAACCCAACGGAAATCG
GGCAAACATTCTGGGTAACCACCCTCATCGTTTCGTCTCACATCAATGACCACAGTGAAC
CCAACCCCATCCAAACCAGCAGAGGAATCACCTATGTGTTCGACGCCTAACACACCTGCT
ATAGTTATATTGAAATTTCCTACCTCTTCTGTACTGAAGACATTCAAGCACAGTTTATGT
ACAGTGGTTAGAAAGGATACGTCATTGGGATGTATGCGTACAATAGGAAAATGATAGTTG
TTGGAAGCCGACTCACTCTTAGCATTTTTTGGACAAACTAGTACAGCTTTTGAAGCTAGA
TGTTCAGGACCATGGAATATGATGACTGTCCTTAGGAATAACAATTTTTGTGGCTGTAAA
ACTGGTCTTACGGTTGTGGTCCTATTTTCCACAGATTTAAGTCTCCTTTCATATCCTCTG
TGTATGAGAGAGAGGATGTCTTTACATCTGATTTGGATGATATCCTCTCTGTTCCACCAC
ATTGCCTGTAAAGATTCTTCATCTGCCTCGTCAGTAGTTTTAAGTTTACCGCCAGTAACC
TTCCCTGTAAACGTAAACCTTATCCACCTTCCTCCGCATTCCTCTATGCACAACAGAGAT
TCGGGCAAGATTTCAAGTCCAGCTTCCTCCATTACTTCTCGCTTCACAGCATCAATTATG
CTTTCATTTGGTTCCATTTTTCCAGCTGGCAAATACCATTTCTGATAACAAGATTCTTTT
GCCTCTTGCACCATGAGAACTTCACCACTGTCATTAAATATAACAGCTGCTACGATGTAG
TACAGATTTTGTTTGATAACCAGATCTTCGTATTCCGATCCGATCTCCACGTCGCATTGC
CCTACCTTTTCACCGCTACATTCTCCGTTCAGAGCGCATTCTAATGCGCTGAAATCATAC
TCCATTACTACCTTACTTGTTTCAGATTAAATGCAAGCAAGATTTCTCTTTTGGACTCTT
GCGTATCGAGAATTACACTAATTTAACCTAAA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[2-108] 3.1E-14 - T[436-527] 2.3E-22 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[5-105] 2.42E-15 - T[416-525] 1.75E-16 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[26-101] 12.117 - T[440-523] 13.328 |
| SMART |
RRM_dom (IPR000504) - T[27-97] 2.6E-8 - T[441-519] 4.2E-10 |
| Pfam |
RRM_dom (IPR000504) - T[28-94] 2.1E-9 - T[442-515] 3.6E-7 |
| CDD |
RBM40_RRM1 (IPR034147) - T[28-99] 1.37309E-27 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RBM40_HUMAN | 36.842 % | 306 | 3.11E-98 |
| RBM41_HUMAN | 38.017 % | 89 | 4.99E-19 |