- Transcript 'Moocci.CG.ELv1_2.S65...' >
- Transcript 'Haaura.CG.MTP2014.S2...' >
- Transcript 'Phfumi.CG.MTP2014.S3...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S519.g13106.01.t
Possible name(s)
LHCGR; RXFP2; TSHR
Gene model
Location
S519 [17,502 / 27,009]
Amino acid sequence
Length: 990
>Harore.CG.MTP2014.S519.g13106.01.p
MRKLMLFIFLINFKQVLCEDNDDASRLFFNCVNGERILYEWFCDGNIDCSDKSDEMTNQH
YVDNGPTNEWQRCENPENKHDISCLVKRDNICSTAMTCSNVTPCDLDCVNHYQCQNSDSC
VFRATICDGNSCNGCPEDHEWKNGIGFKCLRNGLECILPQQLLLDDVWDCDGGIDRCFKL
DSSQNATTSTNVSRTLDTNLCFQCLDDVMIIPVTSVCDGIIDCSDLSDECLCEEANPQIC
EQVIKFGQKEPEIDQVSTFDPAALPTATVTLSSPDKVTELFAYPFTFPSNISDVVTCAVG
YVSCGDGKCISRNSICDGIKDCKEDERCSSDICETAYGTACNGIADCKREIPEGSILTGN
DSFPEDECEAFCHSTNASYTCINSPVTLIPTSIGIYQCVEPPGGYSRNFSSTISTAQYCN
GIRECEMGDDENFCPERFPCQAKYVGFVSIAMEQLCDGTEHCVDGSDEAKDLCGVERFHC
PALGGSKVSISLDSVCDLSITCDDETDEMNCTDDRFYCENGEPLFVRFRQTSDGRGDCSD
WSDECPTLNQSTITDGFHSRYELIGSNFLRALVWIFGLLAIAGNLTVIVRESRKLHSLKR
STSVIVTNRLLVLNLAASDILMGFYLLSLAVVGATMEGNYCSQDLQWRSSASCIFLGVLT
VVSSETSVLTMVLLTACRLYAVMRPFSSSVRPRKATVCLMISFAWMTSLLLALLPLAPSL
GSIFVSEAKFKYNPFSRNIVMRLDGARVLFQRLLTYDLKADVQLPDDINERIMEYSWVDL
QENARKYFEHNHLEITSYFGYYSINSVCIPKFFITTSDRAWVFSFVITLFNFLAFTFVAS
AYVYIYIKSTKNSGLGIGRTKQEEKKIRCIQYKVLRLILTDFCCWIPICILAFCRLGGVD
INDTAYAVAAIVLLPINSALNPLLYSDLPETLARKCCVRWRRGRPATSTKQTIITTTNSS
KGEGEFNQGFDIIGAKVDVNSEKKIQENAL
Nucleotide sequence
Length: 2,973
>Harore.CG.MTP2014.S519.g13106.01.t
ATGAGGAAGCTTATGCTTTTCATCTTTTTGATAAACTTCAAACAAGTCCTTTGTGAAGAT
AATGATGACGCGTCTCGACTCTTCTTCAATTGCGTTAACGGAGAACGAATCCTGTATGAA
TGGTTTTGTGATGGCAACATTGACTGTTCAGATAAAAGCGACGAAATGACGAATCAACAT
TACGTGGACAATGGACCGACAAATGAATGGCAAAGGTGCGAAAACCCGGAAAACAAGCAT
GACATCTCATGTTTGGTTAAACGCGACAATATCTGCAGTACAGCAATGACTTGCTCAAAT
GTTACACCCTGTGATCTTGATTGTGTCAATCATTATCAATGCCAGAACAGCGATAGCTGC
GTGTTTAGAGCGACAATATGCGACGGGAATTCATGCAATGGTTGTCCGGAAGATCACGAA
TGGAAAAACGGCATCGGATTCAAATGTCTCCGAAATGGATTGGAATGTATTTTACCACAA
CAATTACTATTGGACGATGTATGGGACTGTGACGGAGGAATTGACCGATGTTTCAAGCTC
GATTCCTCGCAAAATGCGACTACAAGCACGAACGTCTCGCGAACGCTCGACACAAATCTA
TGTTTCCAATGCCTTGATGACGTCATGATCATACCGGTGACTAGCGTGTGTGACGGAATA
ATCGACTGTTCCGATTTATCAGACGAATGTTTATGCGAGGAAGCGAATCCACAGATATGC
GAACAAGTGATCAAATTCGGCCAAAAGGAGCCAGAAATCGACCAGGTTTCAACGTTTGAC
CCGGCTGCACTCCCAACAGCTACAGTTACACTGAGCAGTCCAGACAAAGTGACTGAACTG
TTCGCATATCCATTTACGTTTCCATCAAACATTTCCGATGTGGTCACGTGCGCAGTAGGT
TACGTTTCGTGCGGCGATGGAAAATGCATAAGCCGAAATTCCATTTGTGATGGAATAAAA
GATTGCAAAGAAGATGAAAGATGTTCGTCTGATATATGTGAAACCGCTTACGGAACTGCT
TGCAACGGTATCGCTGATTGTAAACGTGAAATTCCGGAAGGTTCTATACTAACTGGCAAC
GATTCCTTTCCTGAGGATGAATGTGAAGCTTTCTGTCATTCAACAAACGCGAGTTACACT
TGCATTAACAGTCCTGTGACTCTTATTCCAACATCTATCGGGATATATCAATGTGTTGAA
CCACCGGGCGGGTACAGCCGCAATTTCTCTTCTACCATATCGACTGCACAATATTGCAAT
GGAATCCGTGAATGCGAGATGGGAGATGATGAAAATTTTTGCCCAGAACGATTTCCATGT
CAAGCAAAATACGTTGGTTTCGTCAGCATTGCAATGGAACAACTCTGCGACGGTACCGAA
CACTGTGTAGACGGATCAGACGAAGCTAAAGATCTTTGCGGAGTCGAAAGGTTCCATTGT
CCGGCACTCGGGGGAAGCAAGGTCAGCATCAGTCTGGACTCTGTTTGTGACTTATCGATC
ACGTGTGATGACGAAACAGACGAAATGAATTGCACGGATGACCGGTTTTATTGCGAAAAC
GGAGAACCGTTGTTTGTACGTTTTAGACAGACGAGTGATGGGCGGGGCGATTGTTCGGAT
TGGAGCGACGAATGCCCGACTTTGAATCAGTCAACGATAACAGACGGATTTCATTCAAGA
TACGAACTGATTGGGAGTAATTTCTTACGCGCCCTCGTGTGGATATTTGGTCTACTAGCC
ATCGCTGGTAATCTTACGGTGATTGTTCGAGAATCGAGAAAACTTCATAGTCTGAAACGA
TCAACATCGGTCATAGTGACAAATCGACTCCTGGTTTTGAATCTGGCCGCATCGGATATC
TTGATGGGATTCTATCTTCTTTCATTAGCTGTAGTAGGAGCGACGATGGAGGGAAATTAT
TGTTCACAGGATTTGCAGTGGAGAAGCAGCGCATCTTGTATATTTCTCGGTGTTTTAACA
GTCGTCTCCAGTGAGACATCAGTCCTCACAATGGTTTTGCTGACAGCGTGCAGACTATAT
GCAGTAATGCGGCCTTTTAGTTCCTCCGTTCGACCTCGGAAAGCGACGGTCTGTTTGATG
ATTTCATTTGCGTGGATGACGTCACTACTCCTAGCTCTGCTGCCGCTGGCACCTTCATTA
GGTTCAATTTTTGTCTCGGAGGCGAAATTCAAATACAATCCATTCTCTCGGAACATCGTC
ATGCGGCTAGATGGCGCTAGAGTACTATTTCAGAGATTGTTGACTTATGACCTCAAAGCA
GATGTCCAACTCCCGGACGATATCAATGAGCGCATAATGGAATATTCCTGGGTTGATTTA
CAAGAGAATGCTCGGAAGTATTTTGAGCACAATCATTTGGAAATCACATCTTATTTCGGG
TATTACAGCATTAACAGCGTATGTATACCGAAATTTTTCATCACAACGTCGGACAGAGCT
TGGGTATTTTCCTTCGTTATAACGCTTTTTAATTTCCTCGCTTTTACGTTCGTCGCCTCG
GCGTACGTTTACATTTACATAAAATCGACAAAGAACTCTGGATTGGGAATCGGTAGAACG
AAACAGGAAGAGAAGAAGATAAGATGTATTCAATACAAAGTGTTACGTTTAATTTTAACC
GATTTCTGTTGCTGGATACCAATCTGCATCCTTGCATTCTGTCGACTCGGAGGCGTCGAC
ATTAACGACACTGCATACGCCGTTGCTGCCATTGTCCTTCTGCCGATAAACAGCGCGCTG
AACCCTCTGCTATATTCCGATCTACCCGAAACGCTGGCGCGAAAATGCTGCGTTCGGTGG
CGACGAGGCAGACCCGCTACCAGTACCAAACAGACCATAATTACCACGACAAATTCCAGT
AAAGGAGAAGGAGAATTCAATCAAGGGTTCGATATAATTGGTGCTAAAGTTGATGTAAAT
TCAGAAAAAAAAATTCAAGAGAACGCATTGTGA
| SMART |
LDrepeatLR_classA_rpt (IPR002172) - T[24-61] 0.0058 - T[197-234] 0.067 - T[296-330] 0.0085 - T[433-475] 0.0031 - T[510-547] 0.39 |
| SUPERFAMILY |
LDL_receptor-like_sf (IPR036055) - T[28-58] 7.85E-7 - T[201-232] 9.42E-5 - T[294-324] 4.58E-6 - T[510-548] 9.42E-5 |
| CDD |
LDrepeatLR_classA_rpt (IPR002172) - T[29-56] 4.28297E-5 - T[297-327] 2.56467E-4 |
| PRINTS |
LDrepeatLR_classA_rpt (IPR002172) - T[34-55] 5.1E-18 - T[208-229] 5.1E-18 - T[447-468] 5.1E-18 - T[487-508] 5.1E-18 - T[523-544] 5.1E-18 |
| PANTHER |
TSHR/LHCGR/FSHR (IPR034298) - T[43-129] 2.6E-96 - T[216-959] 2.6E-96 |
| ProSiteProfiles |
LDrepeatLR_classA_rpt (IPR002172) - T[296-334] 9.1 - T[433-474] 8.812 |
| ProSiteProfiles |
GPCR_Rhodpsn_7TM (IPR017452) - T[583-925] 20.131 |
| Pfam |
GPCR_Rhodpsn (IPR000276) - T[603-716] 1.3E-11 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| TSHR_HUMAN | 32.927 % | 85.5 | 6.46E-17 |
| LSHR_HUMAN | 32.515 % | 91.7 | 7.59E-19 |
| RXFP2_HUMAN | 30.909 % | 85.5 | 6.72E-17 |