- Transcript 'Cisavi.CG.ENS81.R44....' >
- Transcript 'Harore.CG.MTP2014.S3...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'KH2012:KH.L24.2.v1.B...' >
- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S51.g01192.01.t
Possible name(s)
CDH15; CDH2; CDH4
Gene model
Location
S51 [296,664 / 302,996]
Amino acid sequence
Length: 657
>Harore.CG.MTP2014.S51.g01192.01.p
MRSTTAVVALLFLQPYLCLGAKTIYFHKSSVYGRVKRSWTYPAINIMENMVPDETIATIK
SNAPDLSYYAIASPQLNGKNVFAMDESTGAITQLQAVDRETQDKFNMTAYAYNAAGKRVE
EPVDLVINVFDANDNVPVFDEDSLVGNVPENHAISPTSNFFMTVTSTDQDKGSNAEVKYW
IVDNSESPKKTPPRFSIDDVGHVYVNSALDYETDNLVTFQVVAKDTPKLASGNQVTATVT
VHIEDSNDHAPIMDATPPRTLSELSPLNTPLYTVFATDVDEGVNKMVYFYFDNGNTGGKF
EINSFPSDTESKSRGEIILVKPLDFESGIISYDLVIVAYNKDADNADSAIYRSTTTVNIK
VSDANEPPIFANVPYVATLSEATPPTTPLDIQIAANDPDFNGNQTVSFSIATDPEFWFTI
DPVTGQLKTNSLLDRESPNVVDSTYTLTIRATDNYPGNKASADYDVQIFITDVNDNSPVI
TIPGLDSDGAVKICEKPLNRTVTIIHAEDPDTTQNGPPFVFAFGSEVDSTKWAFEKVSAK
SQMVVTFVKDFDLSSNPSEYYLLYTVSDSGSPIQITTATMTVSICQSGFFRLFSMEAMLC
NGSAFPFCGTKPFIFFVLFIDRQRQLAPIFVFSLPAILPLSEQAKCFAKKNYCYHFL
Nucleotide sequence
Length: 1,974
>Harore.CG.MTP2014.S51.g01192.01.t
ATGCGGTCAACCACTGCAGTTGTCGCATTGCTTTTTTTGCAGCCCTATCTCTGCCTGGGA
GCAAAAACTATCTATTTCCATAAGAGCTCAGTATATGGACGCGTGAAGAGAAGTTGGACA
TACCCTGCTATTAATATCATGGAGAATATGGTCCCGGATGAGACAATAGCAACTATAAAA
TCAAATGCCCCGGATTTGTCTTATTATGCGATTGCCTCACCACAACTGAACGGAAAAAAC
GTGTTCGCGATGGATGAGTCAACAGGTGCTATCACACAGTTACAGGCTGTTGACAGAGAG
ACGCAAGACAAATTTAATATGACGGCCTATGCTTATAATGCTGCAGGAAAAAGGGTTGAA
GAACCGGTTGATCTGGTAATCAATGTATTTGATGCAAATGACAACGTGCCAGTGTTTGAT
GAAGATTCCCTTGTGGGAAACGTTCCAGAGAACCATGCAATATCTCCGACCAGTAACTTC
TTCATGACTGTCACCTCGACGGATCAGGACAAGGGATCGAATGCTGAAGTTAAGTACTGG
ATCGTTGACAACAGTGAAAGTCCCAAGAAGACCCCACCAAGATTTTCCATAGATGACGTA
GGACATGTTTACGTCAACAGCGCACTAGATTACGAAACCGACAACCTTGTTACTTTTCAA
GTTGTTGCCAAGGATACTCCGAAATTAGCATCTGGGAACCAGGTTACGGCAACTGTGACC
GTTCACATAGAAGATTCAAACGATCATGCCCCCATAATGGATGCCACTCCCCCACGTACG
CTTTCAGAACTGTCTCCTCTCAATACCCCTCTGTATACTGTGTTTGCTACTGATGTGGAT
GAAGGAGTAAATAAAATGGTTTACTTCTACTTTGATAACGGCAACACCGGAGGAAAATTT
GAAATCAATTCGTTCCCATCTGACACCGAATCCAAAAGCAGGGGAGAGATCATATTGGTT
AAACCCCTGGATTTTGAATCTGGAATAATCTCTTACGATTTAGTGATCGTAGCTTACAAC
AAAGATGCTGACAATGCTGATTCCGCTATATATAGGTCAACAACGACTGTAAACATTAAA
GTGTCGGACGCGAACGAGCCGCCCATTTTTGCCAATGTGCCCTACGTAGCGACATTGTCC
GAGGCGACGCCGCCCACCACACCGCTAGATATTCAAATTGCTGCAAATGATCCGGATTTC
AATGGAAATCAGACTGTTAGTTTCTCCATCGCAACAGACCCAGAGTTCTGGTTTACCATC
GACCCAGTGACAGGACAACTCAAAACCAACAGCTTACTCGACAGGGAATCACCAAATGTA
GTCGATAGCACTTACACCTTGACGATTCGCGCAACGGATAACTATCCTGGAAATAAGGCC
AGTGCCGACTACGATGTGCAAATATTCATCACTGACGTTAATGATAATTCGCCAGTCATC
ACTATCCCTGGGTTAGACAGTGACGGTGCTGTGAAAATATGCGAAAAACCGCTTAATCGA
ACCGTTACGATTATCCACGCAGAGGACCCAGACACCACTCAGAACGGACCTCCTTTCGTT
TTTGCTTTCGGCAGCGAGGTCGACTCAACTAAATGGGCGTTTGAGAAAGTATCTGCGAAG
AGTCAGATGGTTGTAACATTTGTCAAAGATTTTGATCTAAGTTCGAATCCCTCAGAGTAT
TATCTGCTGTACACAGTCTCTGACTCTGGATCTCCAATACAAATCACAACAGCAACCATG
ACAGTTTCAATATGCCAATCAGGATTCTTCAGACTTTTTAGTATGGAGGCCATGCTTTGC
AATGGGTCAGCATTCCCTTTTTGCGGAACCAAACCATTTATTTTCTTTGTTTTATTCATA
GATAGGCAGAGGCAGTTAGCACCGATTTTTGTTTTCTCTTTGCCTGCCATTCTGCCACTC
AGTGAGCAGGCAAAATGTTTTGCGAAAAAAAATTATTGTTACCACTTCCTATGA
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[44-152] 3.57E-13 - T[127-254] 2.57E-21 - T[247-363] 1.71E-12 - T[359-482] 4.43E-19 - T[473-585] 1.41E-9 |
| SMART |
Cadherin (IPR002126) - T[59-137] 8.5E-7 - T[164-251] 6.8E-17 - T[274-369] 5.6E-7 - T[393-478] 3.0E-19 - T[505-586] 1.6 |
| PRINTS |
Cadherin (IPR002126) - T[80-99] 3.2E-20 - T[118-137] 3.2E-20 - T[137-150] 3.2E-20 - T[199-225] 3.2E-20 - T[462-479] 3.2E-20 |
| Pfam |
Cadherin (IPR002126) - T[148-243] 1.1E-10 - T[260-361] 4.1E-11 - T[375-465] 8.5E-14 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[241-251] . - T[468-478] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH2_HUMAN | 29.604 % | 179 | 2.56E-47 |
| CAD15_HUMAN | 28.115 % | 196 | 3.05E-53 |
| CAD13_HUMAN | 30.498 % | 199 | 4.05E-55 |