- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S51.g01192.02.t
Possible name(s)
CDH15; CDH2; CDH4
Gene model
Location
S51 [293,763 / 302,996]
Amino acid sequence
Length: 898
>Harore.CG.MTP2014.S51.g01192.02.p
MRSTTAVVALLFLQPYLCLGAKTIYFHKSSVYGRVKRSWTYPAINIMENMVPDETIATIK
SNAPDLSYYAIASPQLNGKNVFAMDESTGAITQLQAVDRETQDKFNMTAYAYNAAGKRVE
EPVDLVINVFDANDNVPVFDEDSLVGNVPENHAISPTSNFFMTVTSTDQDKGSNAEVKYW
IVDNSESPKKTPPRFSIDDVGHVYVNSALDYETDNLVTFQVVAKDTPKLASGNQVTATVT
VHIEDSNDHAPIMDATPPRTLSELSPLNTPLYTVFATDVDEGVNKMVYFYFDNGNTGGKF
EINSFPSDTESKSRGEIILVKPLDFESGIISYDLVIVAYNKDADNADSAIYRSTTTVNIK
VSDANEPPIFANVPYVATLSEATPPTTPLDIQIAANDPDFNGNQTVSFSIATDPEFWFTI
DPVTGQLKTNSLLDRESPNVVDSTYTLTIRATDNYPGNKASADYDVQIFITDVNDNSPVI
TIPGLDSDGAVKICEKPLNRTVTIIHAEDPDTTQNGPPFVFAFGSEVDSTKWAFEKVSAK
SQMVVTFVKDFDLSSNPSEYYLLYTVSDSGSPIQITTATMTVSICQCDDSGIVNCSAGIV
GAGGFPLAVVIAIIVLFLIVIILVLSVIAYRRNRSVDKLKEPILYDEDDVRENIQVYHDE
GGGEEDQEAYDLSTLRRPLMDPNEPIRVDEKPLKAQPQSRMPPGVSDDIGDYIGDAKDQA
DSDPSAPPFDSLLVFDYEGAGSDAGSLSSINTATTDGSVDYDYLNNWGPRFKRLADIQTE
VFTVLLQLTLSLLRYIYYSHYDLYLYLHLLTNAWKILEILKHFDLASLRMERVLMVLEEF
LRSILIIIPIYGYQTASSKIVMSDALLRLRLSPSALYNVIVVTDAYWLKHSICFGTIK
Nucleotide sequence
Length: 2,697
>Harore.CG.MTP2014.S51.g01192.02.t
ATGCGGTCAACCACTGCAGTTGTCGCATTGCTTTTTTTGCAGCCCTATCTCTGCCTGGGA
GCAAAAACTATCTATTTCCATAAGAGCTCAGTATATGGACGCGTGAAGAGAAGTTGGACA
TACCCTGCTATTAATATCATGGAGAATATGGTCCCGGATGAGACAATAGCAACTATAAAA
TCAAATGCCCCGGATTTGTCTTATTATGCGATTGCCTCACCACAACTGAACGGAAAAAAC
GTGTTCGCGATGGATGAGTCAACAGGTGCTATCACACAGTTACAGGCTGTTGACAGAGAG
ACGCAAGACAAATTTAATATGACGGCCTATGCTTATAATGCTGCAGGAAAAAGGGTTGAA
GAACCGGTTGATCTGGTAATCAATGTATTTGATGCAAATGACAACGTGCCAGTGTTTGAT
GAAGATTCCCTTGTGGGAAACGTTCCAGAGAACCATGCAATATCTCCGACCAGTAACTTC
TTCATGACTGTCACCTCGACGGATCAGGACAAGGGATCGAATGCTGAAGTTAAGTACTGG
ATCGTTGACAACAGTGAAAGTCCCAAGAAGACCCCACCAAGATTTTCCATAGATGACGTA
GGACATGTTTACGTCAACAGCGCACTAGATTACGAAACCGACAACCTTGTTACTTTTCAA
GTTGTTGCCAAGGATACTCCGAAATTAGCATCTGGGAACCAGGTTACGGCAACTGTGACC
GTTCACATAGAAGATTCAAACGATCATGCCCCCATAATGGATGCCACTCCCCCACGTACG
CTTTCAGAACTGTCTCCTCTCAATACCCCTCTGTATACTGTGTTTGCTACTGATGTGGAT
GAAGGAGTAAATAAAATGGTTTACTTCTACTTTGATAACGGCAACACCGGAGGAAAATTT
GAAATCAATTCGTTCCCATCTGACACCGAATCCAAAAGCAGGGGAGAGATCATATTGGTT
AAACCCCTGGATTTTGAATCTGGAATAATCTCTTACGATTTAGTGATCGTAGCTTACAAC
AAAGATGCTGACAATGCTGATTCCGCTATATATAGGTCAACAACGACTGTAAACATTAAA
GTGTCGGACGCGAACGAGCCGCCCATTTTTGCCAATGTGCCCTACGTAGCGACATTGTCC
GAGGCGACGCCGCCCACCACACCGCTAGATATTCAAATTGCTGCAAATGATCCGGATTTC
AATGGAAATCAGACTGTTAGTTTCTCCATCGCAACAGACCCAGAGTTCTGGTTTACCATC
GACCCAGTGACAGGACAACTCAAAACCAACAGCTTACTCGACAGGGAATCACCAAATGTA
GTCGATAGCACTTACACCTTGACGATTCGCGCAACGGATAACTATCCTGGAAATAAGGCC
AGTGCCGACTACGATGTGCAAATATTCATCACTGACGTTAATGATAATTCGCCAGTCATC
ACTATCCCTGGGTTAGACAGTGACGGTGCTGTGAAAATATGCGAAAAACCGCTTAATCGA
ACCGTTACGATTATCCACGCAGAGGACCCAGACACCACTCAGAACGGACCTCCTTTCGTT
TTTGCTTTCGGCAGCGAGGTCGACTCAACTAAATGGGCGTTTGAGAAAGTATCTGCGAAG
AGTCAGATGGTTGTAACATTTGTCAAAGATTTTGATCTAAGTTCGAATCCCTCAGAGTAT
TATCTGCTGTACACAGTCTCTGACTCTGGATCTCCAATACAAATCACAACAGCAACCATG
ACAGTTTCAATATGCCAGTGTGATGATTCTGGTATTGTTAACTGCTCTGCTGGTATTGTG
GGTGCCGGTGGTTTTCCTTTGGCAGTTGTCATTGCCATTATAGTATTATTCCTGATCGTG
ATAATTCTGGTCCTGTCCGTGATCGCGTACAGGCGTAATCGAAGTGTGGACAAGTTGAAG
GAACCAATCTTGTACGATGAGGATGATGTTCGTGAAAACATTCAGGTTTATCATGATGAG
GGAGGCGGAGAAGAAGACCAAGAAGCTTATGACTTGAGCACTCTACGTCGTCCACTCATG
GATCCAAACGAACCTATCCGTGTTGACGAAAAACCTCTCAAGGCGCAGCCACAGTCCAGG
ATGCCACCAGGAGTCTCTGATGACATCGGCGATTACATTGGAGATGCAAAAGATCAAGCG
GATAGTGACCCCAGTGCCCCACCGTTTGACTCTCTCCTGGTCTTCGACTATGAAGGAGCG
GGCTCTGATGCTGGTTCGCTATCCTCCATCAACACAGCCACGACTGATGGCTCCGTGGAT
TACGACTATCTCAACAACTGGGGACCTCGGTTCAAACGATTGGCAGACATCCAGACTGAA
GTTTTTACAGTACTTCTTCAGCTCACATTATCATTATTACGATACATATATTATTCCCAT
TATGATCTATACTTGTATTTGCACCTTCTCACAAATGCATGGAAAATTTTGGAAATTTTG
AAACATTTCGATTTAGCAAGTTTAAGAATGGAGAGGGTACTTATGGTTTTGGAAGAATTC
CTTCGATCGATTTTGATTATTATTCCTATTTACGGATATCAAACTGCTAGTAGTAAAATT
GTCATGTCGGATGCTCTCCTACGGCTACGGCTTTCTCCCTCTGCTTTATATAATGTAATT
GTTGTTACGGATGCTTATTGGCTGAAGCACTCAATTTGTTTTGGCACAATAAAATAA
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[45-139] 4.71E-11 - T[127-254] 3.71E-21 - T[247-363] 2.71E-12 - T[359-482] 7.14E-19 - T[473-585] 1.57E-9 |
| SMART |
Cadherin (IPR002126) - T[59-137] 8.5E-7 - T[164-251] 6.8E-17 - T[274-369] 5.6E-7 - T[393-478] 3.0E-19 - T[505-592] 0.064 |
| PRINTS |
Cadherin (IPR002126) - T[80-99] 1.3E-19 - T[118-137] 1.3E-19 - T[137-150] 1.3E-19 - T[199-225] 1.3E-19 - T[462-479] 1.3E-19 |
| Pfam |
Cadherin (IPR002126) - T[148-243] 1.8E-10 - T[260-361] 6.4E-11 - T[375-465] 1.3E-13 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[241-251] . - T[468-478] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[640-777] 9.4E-45 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[690-780] 8.5E-31 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 34.496 % | 315 | 1.62E-93 |
| CADH2_HUMAN | 34.1 % | 317 | 3.03E-94 |
| CAD15_HUMAN | 31.722 % | 316 | 8.26E-95 |