Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S51.g01192.03.t

Possible name(s)

CDH15; CDH2; CDH4

Gene model

Harore.CG.MTP2014.S51.g01192

Location

S51 [293,763 / 296,635]

Sequences

Amino acid sequence

Length: 219

>Harore.CG.MTP2014.S51.g01192.03.p
MDPNEPIRVDEKPLKAQPQSRMPPGVSDDIGDYIGDAKDQADSDPSAPPFDSLLVFDYEG
AGSDAGSLSSINTATTDGSVDYDYLNNWGPRFKRLADIQTEVFTVLLQLTLSLLRYIYYS
HYDLYLYLHLLTNAWKILEILKHFDLASLRMERVLMVLEEFLRSILIIIPIYGYQTASSK
IVMSDALLRLRLSPSALYNVIVVTDAYWLKHSICFGTIK

Nucleotide sequence

Length: 1,338

>Harore.CG.MTP2014.S51.g01192.03.t
ATGTTGTACTGTAATGTAATATTGATTTCTGGACTCGAAGGACTATTGCTGTGTTCAGAG
GATAGTCAACAATGTACGGAAGGATACGTTGCTCCAGGAGGACTCACTATACCGATTGTA
ATCGCGATTGTTGCCTTCCTGTTGCTTGTCCTTAGTGAGTCGTTTAAAAAAGTCGCATCC
GTTTGGAATGGTGCAATTTGCACTTTTTTTTCGGACTCGAATGATGCTTTGTACTGGAAC
TCCGGTTTCAAGACTTTAATCCTACTCGGTTCTCAATTGTGCTTAAGTAGAAAATCTCCA
TTGAAAAATCATCAATATGTAAAACACTGTTCAAATTTGCCCGTCTGGACACTGCCTTAT
CACTATACTCTCCTTCACTTGATAGTCGTAGACTTGTAGTGTGATGATTCTGGTATTGTT
AACTGCTCTGCTGGTATTGTGGGTGCCGGTGGTTTTCCTTTGGCAGTTGTCATTGCCATT
ATAGTATTATTCCTGATCGTGATAATTCTGGTCCTGTCCGTGATCGCGTACAGGCGTAAT
CGAAGTGTGGACAAGTTGAAGGAACCAATCTTGTACGATGAGGATGATGTTCGTGAAAAC
ATTCAGGTTTATCATGATGAGGGAGGCGGAGAAGAAGACCAAGAAGCTTATGACTTGAGC
ACTCTACGTCGTCCACTCATGGATCCAAACGAACCTATCCGTGTTGACGAAAAACCTCTC
AAGGCGCAGCCACAGTCCAGGATGCCACCAGGAGTCTCTGATGACATCGGCGATTACATT
GGAGATGCAAAAGATCAAGCGGATAGTGACCCCAGTGCCCCACCGTTTGACTCTCTCCTG
GTCTTCGACTATGAAGGAGCGGGCTCTGATGCTGGTTCGCTATCCTCCATCAACACAGCC
ACGACTGATGGCTCCGTGGATTACGACTATCTCAACAACTGGGGACCTCGGTTCAAACGA
TTGGCAGACATCCAGACTGAAGTTTTTACAGTACTTCTTCAGCTCACATTATCATTATTA
CGATACATATATTATTCCCATTATGATCTATACTTGTATTTGCACCTTCTCACAAATGCA
TGGAAAATTTTGGAAATTTTGAAACATTTCGATTTAGCAAGTTTAAGAATGGAGAGGGTA
CTTATGGTTTTGGAAGAATTCCTTCGATCGATTTTGATTATTATTCCTATTTACGGATAT
CAAACTGCTAGTAGTAAAATTGTCATGTCGGATGCTCTCCTACGGCTACGGCTTTCTCCC
TCTGCTTTATATAATGTAATTGTTGTTACGGATGCTTATTGGCTGAAGCACTCAATTTGT
TTTGGCACAATAAAATAA

InterProScan

Gene3D	Catenin_binding_dom_sf (IPR027397) - T[11-102] 6.9E-32
Pfam	Cadherin_cytoplasmic-dom (IPR000233) - T[19-98] 1.3E-27

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
CADH4_HUMAN	60.215 %	103	1.47E-25
CADH2_HUMAN	60.417 %	99	6.35E-24
CAD11_HUMAN	60 %	95.9	6.96E-23