- Transcript 'KH2012:KH.C2.471.v2....' >
- Transcript 'KH2012:KH.C2.471.v2....' >
- Transcript 'Phfumi.CG.MTP2014.S2...' >
- Transcript 'KH2012:KH.C1.1066.v1...' >
- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S51.g11369.01.t
Possible name(s)
CSMD3; SELE; SELP
Gene model
Location
S51 [350,101 / 354,144]
Amino acid sequence
Length: 614
>Harore.CG.MTP2014.S51.g11369.01.p
MTENICKQFVIWYSILCIRLLLSLTDIKIAEDMKIFLLFSSFYLLLAAANALICWECENA
HGEKDCRKKGKATQCQFNQDACQVEIRHHEGWGFGPLIAKRCKQAHACDNNFKQNPRPAW
NPTQCNPLFPTNSVCRCCCGTDKCNYNSLKCWDTTAECDPRPYAPKFGSVSCSRGKTVGS
TCSFQCNQGYGMVGESSTVCTDKRSWSNPAPTCQPINCPPPHVTPTNGKVVCSDGNNLYS
QCRFSCNPGFELNGAGISLCQAGNIGSGNGKWSHPAPTCSRAGCPAKPRAPEQGRIVCTK
GNSLGSVCEFVCNPHYRRVGPLKSKCVQMEGGILGWDRPTPTCQPIKCENQGQLSHGQMN
CSKTNFATSTCKFECLDEDYSLYPPQAVENSCQNNTRWNIPKPCCARPCPPFALMDLVIV
LDSSSSIGAENWITMIDFLKIFLSQYSVAPDATNFGIFRYNGEVDTDTQILLKDYPDSLE
SVIDAVSKIPYDGSGTNTGNALEHALKVMFARESGNRPRIMDYVLVITDGKSQDPVKDVS
IRLRKAGVKTYVMPVTPPRGRLDMDQVMDMAGRDENIVRGALAAGFQALTSEFTEDLAKI
VCGNPCDHVIHEHI
Nucleotide sequence
Length: 1,845
>Harore.CG.MTP2014.S51.g11369.01.t
ATGACGGAGAATATATGCAAGCAATTTGTCATTTGGTATTCTATACTTTGTATAAGATTA
TTGCTGAGTCTGACAGATATCAAAATAGCTGAAGATATGAAGATATTCTTACTCTTTTCA
AGTTTTTATTTGCTGTTAGCAGCTGCCAATGCATTGATCTGTTGGGAGTGTGAAAATGCT
CATGGCGAGAAGGACTGCAGGAAAAAGGGAAAAGCTACGCAATGCCAATTTAACCAAGAT
GCTTGTCAAGTGGAAATAAGGCATCACGAAGGCTGGGGTTTCGGACCACTCATTGCAAAG
AGATGCAAACAAGCTCATGCCTGCGATAATAATTTCAAACAGAATCCAAGACCTGCATGG
AACCCCACCCAATGCAATCCTTTGTTCCCGACGAATTCTGTTTGCAGATGCTGCTGTGGA
ACGGACAAATGCAACTACAACTCTCTCAAATGCTGGGATACGACTGCCGAGTGTGATCCA
CGACCTTATGCTCCGAAATTTGGCTCCGTTTCGTGCTCGAGAGGTAAAACTGTCGGCAGT
ACTTGCAGCTTTCAGTGTAACCAAGGATACGGAATGGTCGGAGAATCTTCAACTGTCTGC
ACCGACAAGCGCTCTTGGAGTAATCCTGCACCAACATGCCAACCAATCAATTGCCCTCCT
CCACATGTGACTCCTACAAACGGCAAAGTTGTCTGCTCAGATGGAAATAATCTATACAGT
CAGTGCAGATTTTCCTGTAATCCTGGCTTCGAATTAAATGGAGCTGGCATATCTCTTTGT
CAAGCTGGAAACATTGGCAGTGGTAATGGAAAATGGTCCCACCCTGCTCCAACTTGCAGT
CGTGCTGGGTGTCCAGCTAAGCCAAGAGCCCCAGAACAAGGCAGAATTGTGTGTACAAAA
GGAAATTCTCTGGGTTCTGTTTGTGAATTCGTGTGTAACCCACATTACAGACGTGTCGGA
CCCCTCAAATCGAAGTGCGTTCAGATGGAGGGTGGAATATTGGGATGGGATAGACCGACT
CCAACCTGTCAACCAATCAAGTGTGAAAACCAAGGACAGCTTTCCCATGGTCAAATGAAT
TGTTCTAAAACCAATTTTGCCACATCAACATGCAAATTCGAATGCTTAGATGAAGATTAT
AGCCTCTACCCACCTCAAGCTGTTGAAAATTCCTGTCAAAATAATACCAGATGGAATATT
CCGAAACCTTGCTGTGCACGACCATGTCCTCCATTTGCGCTGATGGACTTAGTCATCGTC
CTTGACTCCTCTTCATCAATTGGTGCTGAAAACTGGATTACGATGATAGATTTCTTGAAG
ATATTTTTGAGTCAGTACAGTGTGGCTCCAGACGCAACTAACTTTGGAATCTTCCGTTAC
AATGGAGAAGTAGATACAGATACCCAGATTCTTCTGAAAGATTACCCGGATTCCCTGGAA
TCAGTTATTGATGCTGTTAGCAAGATCCCATACGATGGTTCAGGAACAAACACCGGTAAT
GCTCTCGAACACGCTTTGAAGGTTATGTTCGCTCGGGAAAGCGGAAATCGACCCAGAATT
ATGGATTATGTTTTAGTAATCACTGATGGAAAATCTCAGGATCCCGTAAAAGACGTTTCG
ATCAGATTGCGGAAAGCTGGAGTTAAGACTTACGTGATGCCTGTCACCCCTCCCCGAGGT
CGCCTGGACATGGACCAAGTTATGGATATGGCCGGACGCGATGAAAACATTGTCAGAGGT
GCTTTAGCTGCTGGTTTCCAAGCCCTGACTTCAGAATTTACTGAAGACTTGGCCAAAATC
GTCTGCGGCAATCCGTGTGATCACGTGATCCACGAACATATTTGA
| ProSiteProfiles |
Sushi_SCR_CCP_dom (IPR000436) - T[156-215] 10.167 - T[216-281] 10.198 - T[282-345] 7.919 - T[346-407] 7.184 |
| SMART |
Sushi_SCR_CCP_dom (IPR000436) - T[158-213] 4.4E-10 - T[218-279] 3.1E-11 - T[284-343] 4.6E-7 - T[348-405] 2.7 |
| SUPERFAMILY |
Sushi/SCR/CCP_sf (IPR035976) - T[160-223] 3.06E-14 - T[216-288] 5.56E-12 - T[287-357] 1.61E-11 |
| Pfam |
Sushi_SCR_CCP_dom (IPR000436) - T[160-213] 4.9E-8 - T[218-279] 4.1E-7 - T[287-343] 1.7E-6 |
| CDD |
Sushi_SCR_CCP_dom (IPR000436) - T[160-214] 3.80925E-12 - T[218-279] 1.89306E-11 - T[284-344] 2.70836E-7 - T[348-405] 7.06289E-4 |
| SUPERFAMILY |
vWFA_dom_sf (IPR036465) - T[400-602] 5.25E-42 |
| SMART |
VWF_A (IPR002035) - T[414-590] 1.1E-28 |
| Gene3D |
vWFA_dom_sf (IPR036465) - T[414-607] 5.1E-37 |
| Pfam |
VWF_A (IPR002035) - T[416-572] 4.1E-31 |
| ProSiteProfiles |
VWF_A (IPR002035) - T[416-597] 25.416 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| LYAM3_HUMAN | 33.462 % | 106 | 6.65E-24 |
| CSMD3_HUMAN | 29.825 % | 93.2 | 1.87E-19 |
| LYAM2_HUMAN | 29.412 % | 94.7 | 2.58E-20 |