- Transcript 'KH2012:KH.C8.38.v3.A...' >
- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S52.g13069.01.t
Possible name(s)
PABPC1; PABPC3; PABPC4
Gene model
Location
S52 [2,889 / 3,943]
Amino acid sequence
Length: 333
>Harore.CG.MTP2014.S52.g13069.01.p
MVTTGPSYPMASLYVGDLHPDATEAMLYEKFSQAGPVLSIRVFRDMVTRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGHQIRIMWSQRDPGLRKSGVGNIFIRNLDKSIDNKALYDTFS
TFGNILSCNVSCDENGSKGYGFVHFETEEAAQSAIQKVDGMLLNDKKVFVGKFIGRAERH
KQIGEKLKNFTNIYIKNFGENLDDGKLQEMFEQYGSVKSVAVMKDHEGKSKGFGFVAFDN
HEEAAKAVTELNHKDIGGQEIYVGRAQKKSERLAEIRHRYERQKQEQIQRYQGVNLYVKN
LDDTISDDMLREAFAQFGTIISAKKKQPRPLLK
Nucleotide sequence
Length: 1,002
>Harore.CG.MTP2014.S52.g13069.01.t
ATGGTTACTACTGGTCCTTCCTATCCAATGGCTTCTCTGTACGTGGGCGACCTTCACCCC
GATGCGACTGAGGCAATGCTTTACGAAAAGTTCTCTCAAGCTGGTCCCGTACTGTCAATC
CGTGTGTTTCGGGACATGGTCACGAGACGTTCTCTCGGATATGCCTACGTTAACTTTCAG
CAACCTGCTGATGCCGAACGTGCTCTCGACACCATGAATTTCGACGTTATCAAAGGCCAT
CAAATTCGTATTATGTGGAGTCAACGTGACCCTGGTCTGAGAAAATCTGGCGTCGGTAAC
ATATTCATCAGGAATCTTGACAAATCGATTGACAACAAGGCTCTGTATGATACTTTTTCG
ACTTTCGGAAACATCCTGTCCTGTAATGTTTCGTGTGACGAGAACGGCTCGAAAGGTTAC
GGGTTTGTGCATTTTGAGACTGAAGAAGCTGCACAAAGTGCTATTCAAAAAGTCGACGGC
ATGTTGTTGAACGACAAGAAAGTTTTTGTAGGAAAATTCATTGGTCGGGCTGAACGTCAC
AAGCAGATTGGAGAGAAGCTCAAGAATTTCACTAACATTTATATCAAGAATTTTGGTGAA
AACTTGGACGACGGCAAGCTGCAGGAGATGTTCGAGCAGTATGGAAGTGTGAAAAGCGTA
GCTGTCATGAAAGATCATGAGGGTAAATCAAAAGGGTTTGGATTTGTTGCGTTTGATAAC
CACGAGGAAGCTGCCAAAGCTGTGACCGAATTGAACCACAAGGATATAGGAGGCCAAGAA
ATATATGTTGGCCGGGCACAGAAGAAATCTGAACGTCTGGCGGAAATCCGGCACCGTTAC
GAAAGGCAGAAACAAGAACAAATTCAGCGATACCAGGGAGTAAATCTGTATGTGAAAAAC
CTTGACGATACGATCAGCGATGATATGCTTCGCGAAGCCTTTGCTCAGTTCGGCACGATC
ATCAGTGCCAAAAAGAAGCAACCAAGGCCGTTACTGAAATGA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[4-92] 6.7E-25 - T[93-179] 2.3E-23 - T[180-277] 3.2E-26 - T[283-329] 4.6E-8 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[10-176] 3.94E-48 - T[191-326] 2.8E-33 |
| TIGRFAM |
PABP_1234 (IPR006515) - T[11-324] 6.3E-151 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[11-89] 17.319 - T[99-170] 16.278 - T[191-268] 19.604 |
| SMART |
RRM_dom (IPR000504) - T[12-85] 1.3E-21 - T[100-171] 1.8E-21 - T[192-264] 1.8E-24 |
| Pfam |
RRM_dom (IPR000504) - T[13-83] 9.0E-21 - T[101-167] 1.5E-19 - T[193-261] 3.0E-21 - T[296-324] 1.8E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PABP1_HUMAN | 72.531 % | 514 | 1.06E-180 |
| PABP4_HUMAN | 72.84 % | 504 | 1.11E-176 |
| PABP3_HUMAN | 67.901 % | 474 | 1.88E-165 |