- EST 'AHC0AAA226YJ02_RM1' >
- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S538.g15000.01.t
Possible name(s)
EDEM1; EDEM2; EDEM3
Gene model
Location
S538 [45,347 / 51,757]
Amino acid sequence
Length: 587
>Harore.CG.MTP2014.S538.g15000.01.p
MSYFTFLFAIAGICLLLVAINDAQYASYLKQSYFKHANWSRNNNKDFWGDYYRNKYNFFS
EYDRITMKKEAKEMFYFGYDNYMKYAFPLDELNPIECIGRGPDVENPSNININDVLGNFS
LTLVDSLDTLAILGNASEFKNAVQLVLDTVSFDRNSTVQVFETNIRVLGSLLSAHLIIID
PKQPFGDLRPPDYDDELLTLAHDLAIRLLPAFKNSPSGIPYPRVHLQNGVPNDTVTHTAT
AGAGSLLLEFGMLSRLLGDPTYENSARRAVREIWKRRNRETGLLGQAIDVKTGRWMSRMS
GVGAGIDSYFEYLLKAHILFGDPDDLRMFTEALQNVKYFLRRGREHCNYGSGDPPIYVNV
DLHSGDMLNTWVDSLQAFLPGLLVLNGDIEEAICCHALYYAIWRRFDALPERYNWKMKMP
DVRFYPLRPELVESTYLLYQATKNPFYLHAGKEMLRSIDRYARTKCGYASLHNVLDKTQE
DRMESFFLSETCKYLYLLFDFENPVNRRHLEWVFTTEGHLLPVDSQWRDKPWGDEFSYPP
KLKVGEDLSIHQPAAMNCSSIPFERRYGLPLQQNYLNQLNEMIGVIT
Nucleotide sequence
Length: 3,551
>Harore.CG.MTP2014.S538.g15000.01.t
AGGTCATGTATGAATAGTTATTTAATATTGGACTTAAGATTGTTTTCACCGCTTCCACGA
TTCCATTACTGCCATGATGATCACGTAACATGACTCGCAGCAAAGGAGAAGAACGATCAC
CGTGCCAATATTTTAAGCTTCCAAGATTTCGATGTCATATTTTACATTTTTGTTCGCGAT
AGCTGGAATATGTCTCCTTCTAGTGGCCATCAACGATGCTCAGTACGCTTCCTACCTCAA
ACAATCCTATTTTAAACATGCCAACTGGAGCAGAAATAATAATAAAGACTTCTGGGGAGA
TTATTACAGAAACAAGTATAATTTTTTCTCTGAATATGATCGGATCACGATGAAAAAGGA
AGCGAAAGAAATGTTTTATTTCGGTTATGACAACTACATGAAGTATGCCTTTCCACTGGA
TGAACTGAATCCAATAGAATGCATTGGAAGAGGTCCAGATGTTGAAAATCCGTCCAATAT
CAACATTAACGATGTACTTGGCAATTTTTCTTTAACTTTGGTTGATTCATTAGATACATT
AGCAATTCTTGGCAACGCCTCAGAGTTTAAAAATGCCGTCCAACTTGTATTAGACACTGT
GTCATTCGATAGAAATTCAACCGTCCAAGTATTTGAAACAAACATAAGAGTTCTCGGATC
TCTACTTTCCGCACATCTCATAATCATTGACCCGAAACAACCTTTCGGTGACCTACGTCC
TCCTGACTACGACGATGAACTTTTAACTTTAGCACATGACCTCGCAATACGACTTCTTCC
AGCATTTAAGAATTCGCCAAGTGGGATTCCGTACCCAAGGGTTCATCTACAAAATGGGGT
CCCTAACGACACCGTCACCCACACGGCAACCGCAGGAGCTGGATCTCTGTTACTTGAATT
TGGAATGCTCAGTCGACTGCTCGGTGATCCTACGTACGAGAATTCTGCAAGACGCGCCGT
GAGAGAGATTTGGAAACGGAGAAATAGGGAAACTGGGTTACTGGGACAAGCAATTGATGT
AAAAACAGGACGATGGATGAGTCGTATGAGCGGTGTTGGTGCCGGAATCGATTCATATTT
TGAATATTTATTAAAGGCTCATATACTGTTTGGAGATCCTGACGATTTGCGTATGTTTAC
CGAAGCATTGCAGAATGTTAAATATTTTCTTCGTAGAGGACGAGAGCATTGTAATTATGG
CTCTGGAGATCCGCCGATCTACGTCAACGTTGATCTACACAGCGGAGATATGTTAAATAC
ATGGGTTGACTCGCTTCAAGCTTTTTTACCAGGACTGCTGGTTTTAAATGGCGATATTGA
GGAAGCGATTTGTTGCCATGCGCTCTATTACGCCATCTGGAGGAGATTTGACGCACTGCC
GGAGCGTTACAATTGGAAAATGAAAATGCCCGACGTTCGTTTTTATCCGTTAAGACCAGA
ATTGGTTGAGAGCACTTATTTATTATACCAGGCAACGAAGAATCCTTTTTACTTGCATGC
TGGGAAAGAGATGCTACGCTCCATCGACCGATACGCTCGAACGAAGTGCGGTTATGCTTC
GTTGCACAACGTTCTTGACAAAACTCAGGAAGATCGAATGGAGTCGTTTTTTCTCAGCGA
AACTTGTAAATATCTGTATCTGTTATTTGATTTTGAAAATCCTGTGAACCGACGACACCT
GGAGTGGGTTTTTACGACTGAGGGTCATCTTCTTCCTGTTGATTCTCAATGGAGGGATAA
ACCGTGGGGTGACGAGTTCAGTTACCCACCAAAACTGAAAGTGGGAGAAGATCTAAGCAT
CCATCAACCTGCTGCAATGAATTGTAGCAGTATACCATTTGAACGACGGTACGGTCTTCC
ACTACAGCAAAACTATCTCAATCAACTGAACGAGATGATCGGTGTGATCACGTGACACAA
CGTGGAGATAAACAGACGAACAGTATGCGAGGACAGTGGCTCAAATTATATCTCAATATT
CCGTCCTGGTGATCTAAAAGAAGAAAAAATTCAAACTTATACATTTACTTTACCAGAAAC
AAATTCCGTATTTCGATTCGTGTTGAAATACTTGGTCCTCTGTCTCGGTATATTTCAAGT
CATTGTCGGTTTATTCCAAACATTTTACCAGTTAATTAGAAGGCTGTGATATAGAACTAA
ATGAACCCAGTGTTGTACCTACAGAGAGAGAGCTTGCCTGACTACAACACAATGTTTTTT
GTCAGTAGCATCCCCTTCATGTGGCACCCAGCCATGCCCTAGGTCAGGGGTCAGGGGTCA
TGAACCTTTCCAGGGCAAAGAGCCAAACATAAAATTTTATAAATTTTTAATTTTTAAATA
AAACAATTTCGGTAAAATATTTAAGTATCCAAGAGCCTGCAGGTTCCTAAACTCTGCCCT
TCGTTCAATGAAAATATTATCCGTAAGCATACGGGATTTAAACCAGTGCTTCTCACGGAA
ACTAGCTCCTATGGCATCGTCACGCATCTTTAAAGATAACTTTACGATAATTTCAACTCA
AAAATACAATTCAGACTCGTTAATCTTTTCATGAACAACATTATAGAACTGCATGAAAAT
TACAACTGCATTTCCATGTTTATACTTATATTTACTTTTTTTCACGATCTGGACTTTGGT
AGAATGTTACTGATAGTGGCTATTGTAGGTATAGCACTGGGTAAACTATTTACACCCTGG
CAATCAACTGGAATATTATATAAAAAATTATTTAAATATTCATGAAACATATCAACCTTC
AAATTAACTTACTCTATTATAATGGGTCATTTATTGTAATATATTCGATGCGGTGCTTAT
ATTTACACATGAATATCTTAGATATTGAGCCTTTTTCTTCTTATGTACATATATCCATAT
ACATAGGTGTAGAAAGCATGGGGACAGGGTAGGCTGGCTTAGCCTGTGATTTTATGCAGA
GTACCTACCCTGTATTGACTAAAATAATACTGAAAACAAGTAGAAACTTGTTCCTGATAA
GTTTTATCTTGTGCTGTTTCCGACTACACGTCCATATATTCATAATCTTCAAAACGTTCT
CATTACATAAGTTGCACATGTGCACGCAGGCAATAGATAGCTGTAAATTGCGCAATCATG
GAAACGTGATCGTGATTTTTAGAGGTAAAAGAGGTTTTAGAGGTTATCCTTATTTAATTT
ACTGATTAAGATAACTGGCATGCTTCTTTAATTACAATAATCATTTCTTCGCTCTGGTAA
TTTCAAAGTTCTACGCCTATGTATATTTATATACTTACTTAGTCGTCTGTTTATCTCCAT
ATATATTGAAGACGTACGCTTAGTGCCAATATAGAAGTGTATTTAATTAATTACATTTAT
ATCTTGTACCTTAGAAATTATTATCGAAAATTTTTTCCTTCCTACCAAACTCACGAACTT
GTATGACTAGCAATATTCAGCATTTACCCGGGACACCCCCGTGGCCATATTTACCCACTT
CTGGGCCCTAGATTAATAGAAATGTTTGCATGATTCAATGATCAATTTATATATATTACT
GTAATTATTTT
| Gene3D |
6hp_glycosidase-like_sf (IPR012341) - T[58-532] 6.8E-156 |
| SUPERFAMILY |
Seven-hairpin_glycosidases (IPR036026) - T[64-537] 4.97E-144 |
| Pfam |
Glyco_hydro_47 (IPR001382) - T[74-522] 5.7E-119 |
| PRINTS |
Glyco_hydro_47 (IPR001382) - T[74-94] 4.2E-58 - T[120-134] 4.2E-58 - T[157-175] 4.2E-58 - T[211-230] 4.2E-58 - T[303-320] 4.2E-58 - T[371-387] 4.2E-58 - T[426-450] 4.2E-58 - T[485-505] 4.2E-58 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| EDEM3_HUMAN | 43.644 % | 367 | 3.58E-116 |
| EDEM2_HUMAN | 41.667 % | 327 | 9.57E-105 |
| EDEM1_HUMAN | 61.792 % | 715 | 0 |