- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S549.g14272.01.t
Possible name(s)
SMU1; WDR5; WDR5B
Gene model
Location
S549 [13,914 / 19,955]
Amino acid sequence
Length: 570
>Harore.CG.MTP2014.S549.g14272.01.p
MTLEIESADVIRLIEQYLKESNLHRTLATLQEESTISLNTVDSIEGFISDINNGHWDTVL
QAIQSLKLPDKTLVDLYEQIVLELIELRELGAARSLLRQTDPMLALKQSQPDRYLHLENL
LARSYFDPREAYPDGSTKEKRRAVIGQSLAKEVSVVPPSRLMALLGQALKWQQYQGLLPP
GSTIDLFRGKAAAREEEDEKYPTQISRTIKFGQKSHVECARFSPDGQYLITGSVDGFVEV
WNFATGKIRKDLQFQAKDQFMMMDDAVLCLAFSRDSEMLSTGAQDGKIKVWKITTGQCLR
RFERAHTKGVTCVTFSKDGSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEALFIND
GHNIISASSDGTVKVWNVKVTECVNTFKSFGSGQQDLTVNSIHILPKNLEHFVVCNRSNT
VSIINMQGQVVRSFSSGKREGGDFVCCTVSPRGEWIYCVGEDQVLYCFSTSSGKLERTLT
VHDRDIVNDKLYQMPIDWNLLFTGVQTKCCYPESVSQPDIKCSKARCVLGSGSATSDYHL
TQRMQFLRHLNFWASYEEVPHNGGYHKLLH
Nucleotide sequence
Length: 2,689
>Harore.CG.MTP2014.S549.g14272.01.t
AGAGTTTTAATGATAGAGAATTAAATTAAGTAATAATGACTCTTGAAATTGAATCTGCTG
ATGTCATTCGACTGATTGAACAATATCTGAAAGAAAGCAATTTACATCGAACTTTGGCAA
CTCTGCAAGAGGAATCAACAATTTCATTGAATACAGTTGACAGCATTGAAGGTTTTATAT
CAGATATCAATAATGGACATTGGGATACCGTTCTACAGGCAATTCAATCTCTCAAATTAC
CTGATAAGACATTGGTCGATCTCTACGAACAAATCGTTCTTGAACTCATAGAATTACGAG
AGTTGGGTGCAGCACGTTCGTTGCTTCGTCAAACTGACCCAATGCTCGCTCTGAAACAGT
CGCAGCCTGACAGATATCTTCACCTTGAAAATCTTCTAGCAAGGTCGTATTTTGACCCGA
GAGAGGCGTACCCAGACGGATCGACGAAAGAGAAAAGACGAGCCGTGATCGGACAGTCTT
TAGCGAAAGAGGTGAGCGTCGTACCACCATCACGTCTGATGGCGTTGCTGGGACAAGCAT
TGAAATGGCAACAGTATCAAGGATTGCTTCCACCAGGTTCAACTATCGATCTTTTTCGCG
GTAAAGCAGCAGCCAGAGAAGAGGAAGACGAGAAATATCCAACACAGATCAGTAGAACGA
TTAAATTCGGACAGAAATCTCACGTTGAGTGTGCAAGATTTTCACCTGATGGACAATACC
TGATCACTGGGAGCGTTGACGGTTTTGTGGAAGTTTGGAATTTTGCCACCGGGAAGATCC
GGAAAGATCTGCAGTTCCAAGCAAAAGATCAATTCATGATGATGGACGATGCCGTTCTGT
GTCTTGCATTCAGTCGTGATAGTGAAATGTTGTCGACCGGTGCCCAGGATGGAAAAATAA
AGGTTTGGAAAATCACAACTGGTCAGTGTCTTCGACGTTTTGAAAGAGCTCACACAAAAG
GTGTCACATGCGTTACTTTCTCAAAAGATGGAAGTCAGATTTTAAGTGCCTCGTTCGATC
AAACGATTAGAATTCATGGATTGAAATCGGGAAAAACTTTGAAAGAATTTCGTGGCCATT
CATCGTTCGTTAATGAAGCTCTGTTCATCAATGATGGACATAATATTATCAGCGCATCAT
CAGATGGAACTGTCAAGGTCTGGAACGTGAAAGTTACAGAATGCGTAAATACCTTCAAAT
CGTTCGGCAGTGGACAACAAGACTTAACCGTGAACAGTATTCATATTCTGCCAAAGAATC
TCGAACATTTTGTTGTATGCAACAGATCAAACACTGTTTCCATTATCAACATGCAGGGTC
AGGTAGTTCGATCGTTTAGTTCTGGCAAGCGAGAAGGAGGAGATTTCGTTTGTTGCACTG
TATCACCAAGAGGAGAATGGATTTATTGTGTTGGAGAAGATCAGGTGTTGTATTGTTTCT
CCACATCATCTGGCAAGCTTGAACGTACATTAACTGTCCATGACAGAGATATCGTAAACG
ATAAACTATACCAAATGCCAATTGACTGGAATCTGCTCTTTACAGGGGTCCAAACAAAAT
GCTGTTACCCAGAGAGTGTGTCTCAACCAGATATCAAATGTTCAAAAGCCAGATGTGTAT
TGGGATCCGGATCCGCAACTTCTGATTACCATTTAACACAAAGAATGCAATTTTTACGCC
ATTTGAATTTTTGGGCTTCTTATGAAGAGGTCCCACACAACGGAGGATACCATAAACTTC
TTCATTAAGATATTATACTTTGTTTAAAACTTCTTGTGTCTTCTTCTTTGTATCTGCCCT
CGTAGACTTCCGCATCTCAACTTCCTGAAGGAATTTTATGTGGATCTCCTTCCGACGCCG
TGGAATGAAATATTTCACTATGACTCAACAAATTCTGAAGTTATACGAATGCCTTTACTT
TTTGCCTTTCGCTTTTACAATACACGAAATGTTGTGAAGAAAATGTTCAAACTGCTTTAA
ATGTATGACAAAGGAGACGAACTGAATTGCTTCAAAAACCTCTAATGTATAACTCGAAAT
ATTTGTTCTCTAGTAGAACTTTTACCATGTGCTCTTTTGACATGTATAAATTTAATATAC
AGCCATTATAACTAGTTATATGCAAGCCTGTTACTTCTACGACAGATAGTTCAGGATTCC
GGTTAGCTTGAACTGATTCATTGGCCCTGGCGAAATCCCTCCAAATGAATGTTTGAATAG
CTCGGAGTATTTTGCTTGATCCCTTCGACTTCAAGCTAATGAGCTTTCAGCGTGTTTTTT
TTTGGCAAATTCCCCTTCTCAAACAGGCTTCAGATTTGTTGTAATGTTTGTTTTACTATA
AACAGTCTCGAATCTATTTTTTCAGACTTATTGTACAGGCTGTGTGTTCTAAATGGTAAC
CTATGACCAGGACTGGTATGTGATTATTTTACGACCTATGCAAGCCGTAGTCCCACCCTG
CACTCAGGGTCTACGCAAAATTGCCAACTTCCATAAGGGAAGTGCACAAGCGAGTTTTTT
GTAGACCGTTCCAGTGTATTATTTTTTAAACGACTAATTATTGATACATAACCTTGTTGG
CCCGATGTTAGTGCCAACCATGTCTAAGACATATGTTTACTCGTATAGTTTGTGCTACCC
CTGTATGTTATTTAATTAACAGCTTAATAAACTGGGTAGAAACACAATA
| ProSiteProfiles |
LisH (IPR006594) - T[6-38] 10.512 |
| SMART |
LisH (IPR006594) - T[6-38] 7.8E-6 |
| ProSiteProfiles |
CTLH_C (IPR006595) - T[40-92] 11.01 |
| SMART |
CTLH_C (IPR006595) - T[40-92] 1.0E-7 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[194-503] 9.2E-67 |
| SMART |
WD40_repeat (IPR001680) - T[202-242] 7.4E-7 - T[253-292] 2.1E-4 - T[295-335] 1.1E-8 - T[338-377] 7.1E-8 - T[380-425] 16.0 - T[427-469] 3.4 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[208-487] 7.94E-63 |
| Pfam |
WD40_repeat (IPR001680) - T[210-242] 1.8E-6 - T[267-292] 2.6E-4 - T[296-333] 2.8E-6 - T[339-377] 4.0E-6 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[210-386] 38.23 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[210-251] 13.182 - T[260-301] 13.382 - T[303-344] 11.478 - T[345-386] 14.953 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[229-243] . - T[364-378] . |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[229-243] 7.4E-6 - T[279-293] 7.4E-6 - T[364-378] 7.4E-6 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| WDR5_HUMAN | 26.207 % | 122 | 9.61E-31 |
| WDR5B_HUMAN | 25.503 % | 113 | 1.29E-27 |
| SMU1_HUMAN | 83.197 % | 873 | 0 |