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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S2...'
  2. Clone 'cicl029n05'
  3. Transcript 'Phmamm.CG.MTP2014.S6...'
  4. Transcript 'Cisavi.CG.ENS81.R19....'
  5. Transcript 'Harore.CG.MTP2014.S5...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S549.g14272.01.t

Possible name(s)

SMU1; WDR5; WDR5B

Location

S549 [13,914 / 19,955]

Sequences

Amino acid sequence

Length: 570

>Harore.CG.MTP2014.S549.g14272.01.p
MTLEIESADVIRLIEQYLKESNLHRTLATLQEESTISLNTVDSIEGFISDINNGHWDTVL
QAIQSLKLPDKTLVDLYEQIVLELIELRELGAARSLLRQTDPMLALKQSQPDRYLHLENL
LARSYFDPREAYPDGSTKEKRRAVIGQSLAKEVSVVPPSRLMALLGQALKWQQYQGLLPP
GSTIDLFRGKAAAREEEDEKYPTQISRTIKFGQKSHVECARFSPDGQYLITGSVDGFVEV
WNFATGKIRKDLQFQAKDQFMMMDDAVLCLAFSRDSEMLSTGAQDGKIKVWKITTGQCLR
RFERAHTKGVTCVTFSKDGSQILSASFDQTIRIHGLKSGKTLKEFRGHSSFVNEALFIND
GHNIISASSDGTVKVWNVKVTECVNTFKSFGSGQQDLTVNSIHILPKNLEHFVVCNRSNT
VSIINMQGQVVRSFSSGKREGGDFVCCTVSPRGEWIYCVGEDQVLYCFSTSSGKLERTLT
VHDRDIVNDKLYQMPIDWNLLFTGVQTKCCYPESVSQPDIKCSKARCVLGSGSATSDYHL
TQRMQFLRHLNFWASYEEVPHNGGYHKLLH

Nucleotide sequence

Length: 2,689

>Harore.CG.MTP2014.S549.g14272.01.t
AGAGTTTTAATGATAGAGAATTAAATTAAGTAATAATGACTCTTGAAATTGAATCTGCTG
ATGTCATTCGACTGATTGAACAATATCTGAAAGAAAGCAATTTACATCGAACTTTGGCAA
CTCTGCAAGAGGAATCAACAATTTCATTGAATACAGTTGACAGCATTGAAGGTTTTATAT
CAGATATCAATAATGGACATTGGGATACCGTTCTACAGGCAATTCAATCTCTCAAATTAC
CTGATAAGACATTGGTCGATCTCTACGAACAAATCGTTCTTGAACTCATAGAATTACGAG
AGTTGGGTGCAGCACGTTCGTTGCTTCGTCAAACTGACCCAATGCTCGCTCTGAAACAGT
CGCAGCCTGACAGATATCTTCACCTTGAAAATCTTCTAGCAAGGTCGTATTTTGACCCGA
GAGAGGCGTACCCAGACGGATCGACGAAAGAGAAAAGACGAGCCGTGATCGGACAGTCTT
TAGCGAAAGAGGTGAGCGTCGTACCACCATCACGTCTGATGGCGTTGCTGGGACAAGCAT
TGAAATGGCAACAGTATCAAGGATTGCTTCCACCAGGTTCAACTATCGATCTTTTTCGCG
GTAAAGCAGCAGCCAGAGAAGAGGAAGACGAGAAATATCCAACACAGATCAGTAGAACGA
TTAAATTCGGACAGAAATCTCACGTTGAGTGTGCAAGATTTTCACCTGATGGACAATACC
TGATCACTGGGAGCGTTGACGGTTTTGTGGAAGTTTGGAATTTTGCCACCGGGAAGATCC
GGAAAGATCTGCAGTTCCAAGCAAAAGATCAATTCATGATGATGGACGATGCCGTTCTGT
GTCTTGCATTCAGTCGTGATAGTGAAATGTTGTCGACCGGTGCCCAGGATGGAAAAATAA
AGGTTTGGAAAATCACAACTGGTCAGTGTCTTCGACGTTTTGAAAGAGCTCACACAAAAG
GTGTCACATGCGTTACTTTCTCAAAAGATGGAAGTCAGATTTTAAGTGCCTCGTTCGATC
AAACGATTAGAATTCATGGATTGAAATCGGGAAAAACTTTGAAAGAATTTCGTGGCCATT
CATCGTTCGTTAATGAAGCTCTGTTCATCAATGATGGACATAATATTATCAGCGCATCAT
CAGATGGAACTGTCAAGGTCTGGAACGTGAAAGTTACAGAATGCGTAAATACCTTCAAAT
CGTTCGGCAGTGGACAACAAGACTTAACCGTGAACAGTATTCATATTCTGCCAAAGAATC
TCGAACATTTTGTTGTATGCAACAGATCAAACACTGTTTCCATTATCAACATGCAGGGTC
AGGTAGTTCGATCGTTTAGTTCTGGCAAGCGAGAAGGAGGAGATTTCGTTTGTTGCACTG
TATCACCAAGAGGAGAATGGATTTATTGTGTTGGAGAAGATCAGGTGTTGTATTGTTTCT
CCACATCATCTGGCAAGCTTGAACGTACATTAACTGTCCATGACAGAGATATCGTAAACG
ATAAACTATACCAAATGCCAATTGACTGGAATCTGCTCTTTACAGGGGTCCAAACAAAAT
GCTGTTACCCAGAGAGTGTGTCTCAACCAGATATCAAATGTTCAAAAGCCAGATGTGTAT
TGGGATCCGGATCCGCAACTTCTGATTACCATTTAACACAAAGAATGCAATTTTTACGCC
ATTTGAATTTTTGGGCTTCTTATGAAGAGGTCCCACACAACGGAGGATACCATAAACTTC
TTCATTAAGATATTATACTTTGTTTAAAACTTCTTGTGTCTTCTTCTTTGTATCTGCCCT
CGTAGACTTCCGCATCTCAACTTCCTGAAGGAATTTTATGTGGATCTCCTTCCGACGCCG
TGGAATGAAATATTTCACTATGACTCAACAAATTCTGAAGTTATACGAATGCCTTTACTT
TTTGCCTTTCGCTTTTACAATACACGAAATGTTGTGAAGAAAATGTTCAAACTGCTTTAA
ATGTATGACAAAGGAGACGAACTGAATTGCTTCAAAAACCTCTAATGTATAACTCGAAAT
ATTTGTTCTCTAGTAGAACTTTTACCATGTGCTCTTTTGACATGTATAAATTTAATATAC
AGCCATTATAACTAGTTATATGCAAGCCTGTTACTTCTACGACAGATAGTTCAGGATTCC
GGTTAGCTTGAACTGATTCATTGGCCCTGGCGAAATCCCTCCAAATGAATGTTTGAATAG
CTCGGAGTATTTTGCTTGATCCCTTCGACTTCAAGCTAATGAGCTTTCAGCGTGTTTTTT
TTTGGCAAATTCCCCTTCTCAAACAGGCTTCAGATTTGTTGTAATGTTTGTTTTACTATA
AACAGTCTCGAATCTATTTTTTCAGACTTATTGTACAGGCTGTGTGTTCTAAATGGTAAC
CTATGACCAGGACTGGTATGTGATTATTTTACGACCTATGCAAGCCGTAGTCCCACCCTG
CACTCAGGGTCTACGCAAAATTGCCAACTTCCATAAGGGAAGTGCACAAGCGAGTTTTTT
GTAGACCGTTCCAGTGTATTATTTTTTAAACGACTAATTATTGATACATAACCTTGTTGG
CCCGATGTTAGTGCCAACCATGTCTAAGACATATGTTTACTCGTATAGTTTGTGCTACCC
CTGTATGTTATTTAATTAACAGCTTAATAAACTGGGTAGAAACACAATA

InterProScan

ProSiteProfiles
LisH (IPR006594) - T[6-38] 10.512
SMART
LisH (IPR006594) - T[6-38] 7.8E-6
ProSiteProfiles
CTLH_C (IPR006595) - T[40-92] 11.01
SMART
CTLH_C (IPR006595) - T[40-92] 1.0E-7
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[194-503] 9.2E-67
SMART
WD40_repeat (IPR001680) - T[202-242] 7.4E-7 - T[253-292] 2.1E-4 - T[295-335] 1.1E-8 - T[338-377] 7.1E-8 - T[380-425] 16.0 - T[427-469] 3.4
SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[208-487] 7.94E-63
Pfam
WD40_repeat (IPR001680) - T[210-242] 1.8E-6 - T[267-292] 2.6E-4 - T[296-333] 2.8E-6 - T[339-377] 4.0E-6
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[210-386] 38.23
ProSiteProfiles
WD40_repeat (IPR001680) - T[210-251] 13.182 - T[260-301] 13.382 - T[303-344] 11.478 - T[345-386] 14.953
ProSitePatterns
WD40_repeat_CS (IPR019775) - T[229-243] . - T[364-378] .
PRINTS
G-protein_beta_WD-40_rep (IPR020472) - T[229-243] 7.4E-6 - T[279-293] 7.4E-6 - T[364-378] 7.4E-6

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
WDR5_HUMAN 26.207 % 122 9.61E-31
WDR5B_HUMAN 25.503 % 113 1.29E-27
SMU1_HUMAN 83.197 % 873 0