Aniseed - Transcript Card

Transcript Model

Transcript Id

Harore.CG.MTP2014.S58.g01050.01.t

Possible name(s)

NDC1

Gene model

Harore.CG.MTP2014.S58.g01050

Location

S58 [259,966 / 261,929]

Sequences

Amino acid sequence

Length: 349

>Harore.CG.MTP2014.S58.g01050.01.p
METRSKVRSVNYHKHWFIDGEFKWRTLASAVWSWFLTFAVLATFIVFVRIHPSSHFYMLY
DILNTLSTVRTWLICLVIASLTSFLVRLYYSYYAVAPISPSSRMSLIMSVLSPFRLVYTL
ANALFGTVTAHLITHLIGSTYSDIYHACSYNSKDGAVNESCINESWFILVLFGFFLGIVH
STNFFVNHNNGLTFQSVQEARFLYIKCKLSSMIYDCVHRSLTYMRYFCFVYYFVGFLPRD
SLAYVMGVLPSEFHLLSVWRIFAMIPVLWHLFLFGTLLLFLWELSWQLFNIYNTQNYNFL
FESVFPEDKQKLLLDNLDTNSPPIVQVSCHFFEGKCRQIIFRAIEYKSF

Nucleotide sequence

Length: 1,050

>Harore.CG.MTP2014.S58.g01050.01.t
ATGGAAACTCGCAGTAAAGTAAGATCGGTTAACTATCACAAGCACTGGTTTATTGATGGG
GAGTTCAAATGGAGAACTTTGGCTAGTGCAGTTTGGAGTTGGTTTTTAACTTTTGCTGTT
CTGGCAACCTTCATCGTTTTTGTTAGAATTCATCCTTCAAGTCACTTTTATATGCTATAT
GATATTCTCAACACACTGTCAACAGTAAGAACGTGGTTGATATGTTTGGTCATCGCTTCC
CTAACTTCGTTCCTTGTTCGTCTTTATTACAGTTACTACGCCGTTGCACCAATTTCTCCG
AGCTCTCGAATGTCCTTGATCATGTCAGTACTTTCACCATTTCGACTCGTGTACACCTTA
GCAAATGCTCTATTTGGAACAGTAACAGCACACCTCATTACACATCTCATTGGCTCCACT
TACTCAGATATCTATCATGCCTGTTCTTATAATTCCAAAGATGGCGCAGTAAATGAGTCT
TGTATCAATGAGTCCTGGTTTATTCTCGTTCTGTTTGGATTTTTTCTCGGCATTGTGCAC
AGCACAAATTTCTTTGTTAATCACAATAACGGCTTGACATTCCAATCTGTACAGGAAGCG
AGGTTTTTGTATATTAAATGCAAATTGTCCAGCATGATTTATGACTGTGTTCACCGTTCT
CTCACCTACATGCGCTACTTTTGCTTTGTTTACTATTTCGTTGGATTCTTGCCACGTGAT
TCCCTCGCCTATGTTATGGGAGTCTTACCGAGTGAATTCCATCTACTAAGTGTGTGGAGA
ATTTTTGCAATGATACCAGTTCTATGGCATCTCTTCTTGTTTGGAACTTTGCTTCTATTT
TTGTGGGAATTGTCATGGCAACTTTTCAACATTTATAACACGCAGAACTACAATTTCCTG
TTTGAATCTGTGTTTCCTGAAGACAAACAAAAGTTATTGTTGGACAATCTTGACACCAAC
TCTCCACCTATAGTGCAAGTAAGTTGTCATTTTTTTGAAGGTAAATGCAGACAGATTATT
TTCAGAGCAATTGAATATAAAAGTTTTTAG

InterProScan

PANTHER	Nucleoporin_prot_Ndc1/Nup (IPR019049) - T[12-327] 1.2E-52
Pfam	Nucleoporin_prot_Ndc1/Nup (IPR019049) - T[23-326] 2.5E-28

Best Blast Hits in UniProt

Protein Name	Identity	Bit Score	e-value
NDC1_HUMAN	29.773 %	115	3.35E-28