- Transcript 'Phfumi.CG.MTP2014.S5...' >
- Transcript 'Moocul.CG.ELv1_2.S97...' >
- Transcript 'KH2012:KH.C4.487.v1....' >
- Transcript 'Moocul.CG.ELv1_2.S12...' >
- Transcript 'Harore.CG.MTP2014.S5...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S58.g11433.01.t
Possible name(s)
BRIP1; RTEL1; RTEL1-TNFRSF6B
Gene model
Location
S58 [42,184 / 47,394]
Amino acid sequence
Length: 1,089
>Harore.CG.MTP2014.S58.g11433.01.p
MLTLHIRGIEVEFPFKPYDVQLDYMTKVIESLQTGNNAILESPTGTGKTLCLLCATLAWR
RSEIKSKTLSIQNQPSDKEPAYPLGWGQTDAVPGEEEQQIPSAPKVIYASRTHSQLTQVV
AELKRTDYAKDTKISILGSREQLCIHPEVSEQKNNTAMIHMCRNKVNKRICQFYNNVENV
RKSGIFTGEVLDIEELVNLGKKRNACPYYAQREQSKEADTGIIFSPYNYLLDRKARGSNN
LDVKDNILIFDEAHNLEKMCEESASFDLTSVDIAHCIEEMGDLLSAKCKLIETGTIPNGH
EAGQSSALHEFDQDELTLLKVLFLALEKHLDDIELSRADKCRTEKGRYMFEFLAQVNLNF
GTHEALLSVIEKVVSYLSTLSNSFQTRGTALQKFAEIVKVVFSMSDGQSNILPSSLCQSS
YVMEKMMDELSKFYRVHIQEESPKDSYKQSSTNTKSKRSKRTLSYWCFSPGYAMRDLIAC
GVRNLILTSGTLSPLASFTCELQVDFPITLQNTHVIDDHQIFVGVMTKGLSGRKLESTYK
SRNDSQLTTELGRTLTQIARTCPGGLLVFFPSYAAMEAYTTCWSNYSVDIMRELELVKPC
TSEPKNKHELKQAMEKYYSDVEKPSGGTFLAVCRGKVSEGLDFANDNGRAVVVIGLPFPP
SKDPKVRLKMQFLEDLRANGAKQIITGQEWYRLQALRAVNQAIGRVIRHRFDYGAVLLCD
HRYSQKENSSELPKWIHGRVNTFDNCQQALRRLKAFFCSIKDKEKIRMQKLKMYEPNCIQ
NDKTDTSDSFLKPTLPAKDQMFFGVKPDKRKDDDNFSQYFARANKSSDSRKKSNLRFPKL
NEFDDHIPSTSNGASDSIQSTSGGSCSGCEITGKRKRHDVPESEGSVVIKNRKKKNLGLL
DALDRDSTVTECTVEEEPAVVSEESTQRLSSHMLAMDKRLDDERRGMLRKKIKIVSKSTA
LSSGKEQKDKKLISANSEVNFKSSCCDVIEVNESKLTSGTAKEYLDAIKSRFVESSYLQF
KRLTACYSISRELDALVSGLADLFLEDQTHHVLFRCFIRFIKLEQRAKFDEFCFKLTGKR
CLKKNKSSK
Nucleotide sequence
Length: 3,602
>Harore.CG.MTP2014.S58.g11433.01.t
AGCAATATCAGAGTAATCTAGAATGCTTTAGAAAATCTACTCTTCGGTATTCATGTTACC
TGGTTCAGAAGTTCCATGAAACCTGATGAAGGATCAAAAATTTTCCATATACTAGAGTCG
GGAATAAATCGAATATGCTCACTCTGCATATACGTGGCATCGAAGTTGAATTTCCGTTCA
AACCTTACGATGTACAGCTAGATTATATGACCAAAGTTATAGAATCATTGCAGACTGGTA
ACAACGCTATCCTCGAATCACCTACAGGAACTGGCAAGACTCTTTGTCTGTTATGTGCCA
CGCTGGCATGGAGAAGGTCAGAAATAAAATCCAAGACACTGAGCATACAAAACCAACCAT
CCGACAAAGAACCCGCATATCCGTTGGGTTGGGGCCAAACAGATGCTGTTCCTGGGGAGG
AAGAACAGCAAATTCCAAGCGCGCCCAAAGTTATTTACGCATCTCGAACGCATTCACAGC
TGACCCAAGTGGTCGCCGAACTGAAACGGACTGATTACGCAAAAGATACGAAGATAAGCA
TCTTGGGTTCTCGGGAACAGCTGTGTATCCATCCTGAAGTTTCGGAGCAGAAGAACAATA
CGGCCATGATACATATGTGTAGAAACAAAGTGAACAAACGCATCTGCCAATTTTATAATA
ATGTTGAAAATGTGAGAAAATCTGGAATTTTCACCGGAGAGGTTCTGGATATCGAAGAGC
TTGTGAATCTAGGAAAGAAAAGAAATGCGTGTCCATATTATGCACAAAGAGAGCAGTCAA
AGGAGGCTGATACCGGGATCATATTCTCCCCATACAATTATCTTCTCGATCGAAAGGCAA
GAGGATCTAACAATCTCGATGTTAAGGATAACATACTGATTTTTGACGAAGCCCACAATC
TCGAGAAGATGTGTGAAGAATCTGCTTCGTTTGATCTGACATCTGTTGATATTGCTCATT
GCATTGAAGAAATGGGAGATTTGCTTTCGGCAAAATGCAAATTGATTGAAACTGGAACTA
TTCCAAATGGTCATGAAGCAGGTCAATCCTCCGCACTTCATGAATTTGATCAAGATGAAC
TAACTCTTCTCAAAGTACTCTTTCTGGCTCTGGAGAAACATCTAGATGATATCGAGCTCT
CTAGGGCTGATAAATGCAGGACTGAGAAAGGAAGGTATATGTTTGAGTTCCTGGCTCAAG
TTAATTTAAATTTCGGAACCCACGAAGCTCTTCTTAGCGTGATTGAAAAAGTGGTGTCGT
ACCTATCCACTCTGAGCAATTCATTTCAAACACGCGGCACAGCTTTGCAAAAGTTTGCTG
AAATTGTCAAAGTTGTGTTCAGCATGTCAGACGGGCAGTCAAACATCTTGCCATCTTCTC
TCTGTCAGTCCAGCTATGTAATGGAGAAAATGATGGACGAGTTGTCTAAGTTTTATCGCG
TTCACATTCAAGAAGAGTCTCCTAAAGATTCTTATAAGCAGTCGAGCACGAATACAAAGT
CTAAAAGAAGCAAACGTACTCTCAGCTATTGGTGTTTTAGCCCAGGTTATGCAATGCGTG
ATCTCATTGCATGTGGGGTTAGAAACCTAATACTAACCAGTGGTACGCTATCACCTCTAG
CATCGTTCACATGTGAATTACAAGTCGATTTCCCGATAACATTACAGAACACGCATGTAA
TAGATGATCATCAAATATTTGTCGGTGTTATGACGAAAGGTTTGAGTGGGAGAAAACTCG
AATCTACATACAAGTCAAGAAATGATTCCCAGCTGACTACCGAACTTGGTCGCACACTGA
CCCAGATTGCCAGAACCTGTCCTGGTGGTCTGCTTGTCTTTTTTCCTTCTTATGCTGCAA
TGGAAGCTTACACTACTTGCTGGAGCAATTATTCAGTTGATATTATGAGAGAATTAGAAT
TGGTCAAGCCTTGCACCTCAGAACCTAAAAATAAACATGAGTTGAAGCAAGCAATGGAAA
AGTACTACAGTGATGTCGAAAAGCCTTCAGGCGGCACTTTCTTAGCTGTTTGCCGTGGCA
AAGTTTCTGAAGGACTTGATTTTGCCAATGATAATGGGAGAGCGGTCGTAGTAATTGGCT
TACCGTTCCCTCCTTCGAAAGACCCAAAAGTTCGATTAAAGATGCAGTTCCTCGAGGATC
TTCGAGCAAATGGAGCAAAACAAATAATAACTGGACAAGAATGGTATCGGCTTCAAGCTT
TGAGAGCTGTCAACCAGGCAATAGGACGTGTAATTCGTCATAGATTTGACTATGGAGCGG
TCCTACTGTGTGATCACAGGTACAGTCAGAAGGAAAATTCTTCCGAACTCCCAAAATGGA
TTCATGGTCGTGTCAACACGTTTGATAATTGTCAGCAAGCATTGAGAAGGCTGAAAGCTT
TTTTCTGTTCCATAAAAGACAAAGAAAAAATTAGAATGCAAAAACTGAAAATGTATGAAC
CAAATTGTATTCAAAATGACAAAACTGATACATCGGATTCCTTTTTGAAACCCACACTAC
CAGCAAAAGATCAAATGTTTTTTGGTGTCAAACCTGATAAAAGAAAAGACGACGATAACT
TCAGTCAATATTTTGCCAGAGCAAACAAAAGTTCTGATAGCAGAAAAAAAAGTAACTTGA
GATTTCCCAAACTTAACGAATTTGACGATCACATACCGTCAACCTCCAATGGAGCTTCAG
ATTCCATTCAGTCAACTTCGGGTGGATCTTGTTCAGGATGTGAAATTACTGGAAAAAGGA
AAAGGCATGATGTTCCTGAAAGTGAGGGTTCAGTTGTCATTAAGAACCGAAAGAAAAAAA
ATTTGGGTTTGCTGGATGCTCTTGATAGGGATTCAACGGTCACCGAGTGCACTGTTGAAG
AAGAACCGGCCGTGGTATCTGAAGAATCTACGCAGAGGTTATCCAGCCATATGCTGGCCA
TGGACAAGAGACTCGATGATGAGAGAAGAGGCATGCTGAGAAAGAAAATTAAAATTGTTT
CAAAAAGTACCGCATTATCATCCGGTAAAGAGCAGAAGGACAAGAAGCTTATTAGTGCAA
ATTCAGAAGTGAACTTTAAATCCTCCTGTTGTGATGTCATTGAGGTTAATGAAAGTAAAC
TGACTTCAGGAACTGCAAAAGAATATCTTGATGCCATCAAATCACGCTTCGTGGAATCCT
CTTATTTGCAGTTCAAACGCTTAACTGCATGTTACAGTATATCCAGAGAACTCGATGCTC
TAGTGTCAGGACTTGCTGATTTATTTCTGGAGGATCAAACACATCATGTTTTGTTTCGTT
GCTTTATAAGGTTCATAAAGCTTGAACAGAGAGCAAAGTTTGATGAATTTTGTTTCAAGT
TGACTGGAAAACGATGTCTAAAGAAGAACAAGTCTTCTAAATAATGACACTCCTGAGAAT
TTTTTCATTCCTAATCATGTTGAGCTGATTATATCCCATCTGTAACATATTGCTTTCCAA
TGCCATATTTTATTCAATAATGCACAGGATTACCATTGCTAAGTTAAATTTTCGTACAGA
CATTTCATTTCTTTCACTGACTACTCCTATTTCTCTACAGTTTTTTATTTATTTATGTTT
AC
| Hamap |
RTEL1 (IPR030845) - T[1-1079] 12.73 |
| ProSiteProfiles |
Helic_SF1/SF2_ATP-bd_DinG/Rad3 (IPR014013) - T[7-306] 29.928 |
| SMART |
Helicase-like_DEXD_c2 (IPR006554) - T[9-295] 5.3E-63 |
| SUPERFAMILY |
P-loop_NTPase (IPR027417) - T[10-66] 1.27E-12 - T[28-62] 1.63E-11 - T[102-124] 1.63E-11 - T[105-143] 1.27E-12 - T[203-279] 1.63E-11 - T[215-300] 1.27E-12 - T[481-495] 1.63E-11 - T[530-718] 1.63E-11 |
| TIGRFAM |
Rad3/Chl1-like (IPR013020) - T[11-751] 4.1E-143 |
| SMART |
Helicase_ATP-bd (IPR014001) - T[13-322] 1.2E-5 |
| Pfam |
DEAD_2 (IPR010614) - T[108-272] 7.1E-53 |
| Pfam |
ATP-dep_Helicase_C (IPR006555) - T[556-737] 2.4E-51 |
| SMART |
ATP-dep_Helicase_C (IPR006555) - T[573-725] 1.2E-50 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| DDX12_HUMAN | 25.46 % | 224 | 1.5E-60 |
| FANCJ_HUMAN | 32.528 % | 342 | 1.19E-99 |
| RTEL1_HUMAN | 44.922 % | 676 | 0 |