- Transcript 'KH2012:KH.L8.11.v1.A...' >
- Transcript 'KH2012:KH.C3.316.v3....' >
- Transcript 'KH2012:KH.L8.11.v1.A...' >
- Transcript 'Harore.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S651.g13934.01.t
Possible name(s)
FAT4; NOTCH1; NOTCH3
Gene model
Location
S651 [7,132 / 17,809]
Amino acid sequence
Length: 456
>Harore.CG.MTP2014.S651.g13934.01.p
MNPVTEKKCLNGGWCKSGDAMNGCSRCQCQPGYVGKYCETNVNECLMMPCANGGKCFDLS
NDFYCECARGFTGRYCNDEIDECSLKPDLCYNGGTCVNTFGSYECVCPSGYSGKQCDDKK
RPRYTAETPKSILIPAITKVMTTRSSTTIENTESTTRTTTSPKRSTETTVTKSASRRKPQ
LVPVVNEPKVKMTRITHEVKITSMDSEYSAANNELVIRQDQSINSDTVDSSAQAMQVMTF
VFMGLAIVILAAILVLVWMRCYSTHSGAKNNSDEVCHAPQGVSVISSVEREIQNNRQSLY
DPVHLNEPNEIQKSLVYESMIPTTTTTTTTTTQDDQSLRVQIDNSEQEYMQRERRIAPSR
PVSSHIVTSCPSPPPPYQIKPEDISHSRKNLRPVSGYYVALPPTSSRPQSSHHPSSHDQC
YRNSMGAAYSSFAEDREEMRSLLFTDNSIASNGIIV
Nucleotide sequence
Length: 2,739
>Harore.CG.MTP2014.S651.g13934.01.t
AAGCTTAGTTGAATACATTGTCACGAAAGATCTTTTACTTTAATGTGGTGAAGTAGGAGA
AGAACTTCTTTGCCCAGAACGAACGACGAACAAAGAAAGCATAGTACAAGAAAACACTTT
ACTGGAAAGTCGACAGAAATTAAGATTGGATTGGATTACAATCACTCATTTCGATCGCTA
TAGAAAACTATCTTTCTACACCTACAACAGTACAGTATACCAGAGCACCAACGATGGCTG
AAATAAGTCATTTTATTATGATGGTATTGTTAGTGACAGTCACGGCAGGTCATTTGTTCG
GCGTGGGAACTCTAGTTTATGCGGAAGACGTACCATGCAGTCAGAGATGCAACCTGCGAC
AAGGCTATTGTACTCCCGACGAAAAGTGCCAATGGAAGGTAACTTTATCTGGCCACGATA
CCTTGCTTTCAAGACACGAATCTTGAAGTGATGTTTTCCTGGCTGGGAAGGTGAGAATTG
CAATGATTGCACTAAAGCGCCTGGATGCAAACAGGGACATTGTGATCAACCCTGGCAGTG
TCTGTGTAACGAAGGATGGGGCGGTTCAAGTTGTGACATAGATCTCGAATTCTGTGAAAA
AACTCGACCGTGCCAAAATCATGCTACTTGCATAAACAATGATGATGGGAGCTACTTGTG
CGTTTGCCAGATTGGTTTCATTGGATCCAACTGTGAAACTTACGCCCCCGGTGGTCTTTC
TGATCCGCTAACAACAACATCTTCCACAACTACAACAATGAATCCGGTTACGGAAAAGAA
ATGTTTGAATGGAGGATGGTGCAAGTCCGGCGATGCAATGAATGGATGCAGCAGATGTCA
ATGTCAACCTGGATACGTCGGAAAATACTGTGAAACTAACGTGAACGAATGTTTGATGAT
GCCATGTGCCAACGGTGGAAAATGTTTTGATTTGTCCAACGACTTCTACTGCGAATGTGC
TCGTGGATTTACAGGTCGTTACTGTAATGACGAAATAGACGAATGTTCTTTGAAACCAGA
TCTATGTTACAACGGTGGAACCTGCGTGAACACCTTTGGGTCCTACGAATGTGTTTGTCC
AAGTGGATACTCCGGAAAACAATGTGATGATAAGAAACGACCTAGGTACACTGCTGAAAC
ACCGAAATCTATCCTCATTCCCGCCATTACAAAAGTTATGACGACACGTAGCAGCACTAC
AATTGAAAATACCGAATCGACGACACGTACAACCACGTCACCTAAACGATCCACTGAGAC
CACCGTTACCAAGAGTGCCAGCCGAAGGAAACCACAGCTTGTGCCTGTAGTCAATGAACC
AAAAGTGAAGATGACTCGAATCACACACGAGGTCAAGATCACTTCGATGGATAGCGAATA
TTCCGCGGCAAACAACGAACTCGTGATCCGGCAGGACCAATCAATAAATTCCGATACCGT
CGATTCGTCAGCGCAGGCTATGCAGGTCATGACTTTCGTATTCATGGGACTTGCGATCGT
CATTCTTGCCGCTATACTTGTTCTGGTTTGGATGAGATGTTATTCTACACATTCAGGGGC
TAAAAATAACAGTGACGAAGTTTGTCATGCACCTCAGGGAGTGTCTGTGATTTCTTCTGT
TGAAAGAGAGATCCAGAATAACAGGCAATCATTATACGATCCTGTACATTTGAATGAACC
AAATGAAATACAGAAATCACTGGTCTATGAATCAATGATACCAACTACTACAACAACAAC
AACAACAACTACTCAAGATGATCAAAGTCTACGTGTTCAAATCGATAATAGCGAGCAAGA
ATACATGCAAAGAGAACGACGTATTGCGCCATCTAGACCAGTGTCATCACACATTGTTAC
ATCATGTCCGTCTCCTCCTCCACCGTACCAAATCAAACCTGAAGATATTTCACATTCAAG
AAAAAATCTTCGACCCGTTTCCGGGTATTACGTAGCACTTCCTCCTACGTCATCAAGACC
GCAATCGTCACATCACCCATCTTCACACGATCAGTGCTATCGTAACTCAATGGGCGCGGC
TTACTCCTCTTTTGCAGAAGACCGAGAAGAAATGAGGTCCCTGCTATTCACAGACAATTC
TATTGCCAGCAACGGAATCATTGTATAAATCAAATACAAAATACATAAAGCACGCTGACT
ATGTTATAAAATTCACGATTGCGTCGCAATACGTTTCGGTATGTGACGTGACGTTGCCAC
TGAAACATTCGTTCGCTATCACAGTTCCCGATATGGACGTTAGAGGTCGCTCGCAAGCAA
GATGGCGACATGCACTGTTTATAAGTTTAAGTTTATTATTTTTGCTTTATTTAATTTTAC
TACCACTGTTTTCTTTTTGCTTCGTTCGTTTTAATCATCTTTTCTTAATATTAATGTTAA
ACCGTACTGTGTGACTCATACTAAGCTACAAATACACAAGAACAAATTTAATTTAATGTG
TTTCTTTACAAGTGGTAGCTGGTTGTCAATATCAATCTAGTTGCTGCTTACGCTGTATAC
TGTTATACCAACTATCAGTAGCCGAGTACGATTCGTTGAAAATGCTGTTGCGTTTCTTTA
ACATGGCATTCCAAATTGCTTCACAAGTCTATTTATTGGTATACACTTGTTCTTTTTCAA
TTGAACATCATATATTACTAGCACTGTGCATATATTATTTCTTTTTCAATAAATTTCAAT
CAAGAATGAATACATTATATACTCGTTATTGAATTAGTA
| ProSiteProfiles |
EGF-like_dom (IPR000742) - T[1-39] 9.332 - T[41-77] 21.621 - T[79-117] 22.364 |
| SUPERFAMILY |
Growth_fac_rcpt_cys_sf (IPR009030) - T[13-118] 7.53E-11 |
| SMART |
EGF-like_dom (IPR000742) - T[14-39] 44.0 - T[44-77] 1.0E-5 - T[82-117] 9.2E-7 |
| ProSitePatterns |
EGF-like_CS (IPR013032) - T[27-38] . - T[27-38] . - T[65-76] . - T[65-76] . - T[105-116] . - T[105-116] . |
| SMART |
EGF-like_Ca-bd_dom (IPR001881) - T[41-77] 8.7E-9 - T[79-117] 3.7E-12 |
| Pfam |
EGF-like_dom (IPR000742) - T[45-75] 2.9E-8 |
| ProSitePatterns |
EGF-type_Asp/Asn_hydroxyl_site (IPR000152) - T[56-67] . - T[96-107] . |
| ProSitePatterns |
EGF_Ca-bd_CS (IPR018097) - T[79-105] . |
| Pfam |
EGF-like_Ca-bd_dom (IPR001881) - T[80-116] 1.6E-9 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| NOTC3_HUMAN | 44.348 % | 107 | 1.18E-24 |
| FAT4_HUMAN | 49.451 % | 108 | 8.89E-25 |
| NOTC1_HUMAN | 43.22 % | 107 | 1.67E-24 |