- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S6...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S66.g07538.01.t
Possible name(s)
LRFN1; NYX; PXDN
Gene model
Location
S66 [126,762 / 130,431]
Amino acid sequence
Length: 537
>Harore.CG.MTP2014.S66.g07538.01.p
MLDKNSRVKWCFCTTLVWMYVGSVSCLTSQHTLSDCDKSIPAVNCTGRKFDQLPVTDDST
LEVQYMYFDKNEIAEVKVRHFEKYVNLSYLSLRENQINNVEPHSFDTNVDLIHIDLSHNN
LSYLPPDLFRKLEFLKYVYMDNNKLKRIESEMFNHMTELEDVRLQSNQLEYVGEDCFVQS
HGLRSLYLEFNNLQIPEKRWFLSFHPAKTSEAYLDDNPWSCDCRMIEFHKWCTKHAWFLE
HDRRGVSVPKCHYPLRLKGTSLAQIKSTDELVCENVAITSQDSSLLVIKAVEGTLVTLPC
NATGSPIPIVNISNPKDEEILSSKGSVTFRIESTKTAHSGLYYCRASGFDTKGLAFIKTV
RIRLMVYTSAGHVAIIILVSLLAVAALMLGSTWYYKKKLSKRSEYSSLSNQAVYYDTQEE
EAARRAANNVDSTHSPSFASPPTSVSNPYQDETEDDDDEEEDIQYSKDTEIENAIVISFS
FANTSTLLPFMYSLFFIMQRANALCQTNFILLVDLVARNLDLCGSGCLLAFGDSYVN
Nucleotide sequence
Length: 1,763
>Harore.CG.MTP2014.S66.g07538.01.t
AGAGCTATGTCCACTATGTAAAACTGTGTTTAGAATAAAGCTCAGAACTTGCAATGTTGG
ATAAAAATTCTCGTGTGAAGTGGTGTTTCTGTACAACACTGGTATGGATGTACGTTGGTT
CAGTGTCATGTCTGACATCTCAGCACACATTGTCTGATTGCGACAAGAGCATTCCCGCTG
TTAATTGTACAGGAAGGAAATTCGATCAGTTGCCAGTGACCGATGATTCAACACTGGAAG
TGCAATATATGTACTTTGATAAAAACGAAATAGCGGAAGTAAAAGTTCGACATTTTGAAA
AATACGTCAACTTGAGTTACTTATCGTTGCGGGAAAATCAGATCAATAATGTTGAGCCAC
ATTCCTTTGACACTAACGTGGATTTGATCCATATCGATTTGTCTCATAACAATCTTTCGT
ACTTACCACCGGATCTTTTTCGCAAACTCGAATTCCTGAAATACGTTTATATGGACAACA
ATAAATTGAAACGAATCGAATCAGAAATGTTTAATCACATGACGGAGTTAGAGGACGTTC
GACTGCAAAGCAATCAGCTGGAATACGTTGGAGAAGATTGTTTTGTTCAGTCTCACGGTC
TGCGGAGTCTTTACCTGGAATTCAATAACCTACAGATACCAGAGAAGAGATGGTTCCTGT
CGTTTCATCCCGCAAAAACAAGCGAAGCATACCTCGATGACAACCCTTGGTCGTGTGACT
GCAGAATGATAGAATTTCACAAATGGTGCACCAAGCACGCATGGTTTTTAGAACATGATA
GACGTGGTGTGAGTGTGCCTAAATGTCACTATCCTCTACGACTGAAAGGAACTAGCCTAG
CCCAAATAAAATCGACGGATGAACTCGTGTGTGAGAATGTAGCAATTACATCTCAAGATA
GTTCACTTTTAGTCATCAAGGCCGTTGAAGGAACGTTGGTGACACTGCCTTGCAATGCTA
CGGGCTCACCGATTCCCATAGTAAACATAAGTAATCCCAAAGACGAAGAAATATTGTCAT
CGAAAGGTTCTGTGACGTTCCGCATTGAGTCAACAAAAACAGCTCATTCCGGTCTCTACT
ATTGTAGAGCTTCAGGATTTGACACAAAGGGCTTGGCGTTCATTAAAACCGTACGAATTA
GGTTGATGGTTTATACATCTGCTGGACATGTTGCTATCATCATACTGGTTAGCCTGCTCG
CGGTTGCTGCTCTGATGCTGGGCAGTACGTGGTACTACAAGAAAAAGCTAAGTAAGCGAA
GCGAATATTCGAGTTTATCCAATCAGGCCGTTTATTACGATACACAAGAAGAAGAAGCTG
CTCGAAGAGCAGCAAACAACGTTGACTCGACGCACTCTCCTTCTTTTGCCTCCCCACCAA
CAAGCGTCTCCAACCCATACCAGGATGAGACCGAGGACGATGACGATGAAGAGGAGGATA
TACAATACAGCAAAGATACGGAGATCGAGAATGCCATTGTAATCTCTTTTTCTTTTGCCA
ATACTTCAACTCTTCTACCATTTATGTATTCATTATTTTTTATTATGCAGAGGGCCAATG
CTCTTTGTCAAACTAATTTTATACTTCTGGTCGATTTAGTGGCTCGTAATCTTGATCTTT
GTGGCAGTGGTTGTCTTCTTGCGTTTGGAGATTCGTATGTGAACTAAAATATGTGTCAGA
ACAGGAACTGTTTGATATACGTTATAAACTGCACTTTATTGTATTAACCGCCCTTACCTT
AGTTCTGGCGTCGACTGCTGGTG
| Gene3D |
LRR_dom_sf (IPR032675) - T[26-280] 7.8E-47 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[84-107] 100.0 - T[109-131] 5.2 - T[132-155] 4.4 - T[156-179] 14.0 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[86-107] 6.98 - T[110-131] 7.134 - T[134-155] 5.671 - T[158-179] 4.655 - T[182-203] 5.155 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[86-145] 3.9E-12 |
| SMART |
Cys-rich_flank_reg_C (IPR000483) - T[217-274] 0.0088 |
| SMART |
Ig_sub (IPR003599) - T[285-365] 1.0E-4 |
| Gene3D |
Ig-like_fold (IPR013783) - T[287-352] 6.5E-9 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[289-348] 1.17E-8 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[292-361] 7.359 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PXDN_HUMAN | 25.798 % | 93.2 | 1.15E-19 |
| LRFN1_HUMAN | 26.061 % | 90.1 | 7.02E-19 |
| NYX_HUMAN | 28.319 % | 95.1 | 7.97E-21 |