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TRANSCRIPT CARD

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  1. Transcript 'KH2012:KH.C8.778.v1....' > 
  2. Clone 'cima8107482' > 
  3. Transcript 'Harore.CG.MTP2014.S7...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S70.g09409.01.t

Possible name(s)

NCL; TRA2A; TRA2B

Gene model

Harore.CG.MTP2014.S70.g09409

Location

S70 [285,458 / 288,881]

Sequences

Amino acid sequence

Length: 269

>Harore.CG.MTP2014.S70.g09409.01.p
MSDSEPGEYKQNNHRSSGERSRSPTPASRHSGTPVKRRSYSRSRSRSRSYRSRSRSRSYR
RRSRSRSYKRSRSPSPRRRSRSPGRRSHSDSRSPGHRRSYTHSRSSKSRSPMSDRKRHIG
DRVNRLKMDPPTGRCLGVFGLSLYTTESDLRETGRSRGFGFVYFESGKDALEAKERANGM
ELDGRRIRVDFSITKRPHTPTPGVYVGRPTSSSYGPPRRGRHDRSRDDGRRDYRRRSPSP
YSRRRSPSPYHRDRSPYRSKSLLNSAGQK

Nucleotide sequence

Length: 1,490

>Harore.CG.MTP2014.S70.g09409.01.t
TCTCGCTCAAAAATCATTTAACGCGGAACTTTTTATTGAAGCAAGGTTGGTTATTGAAAA
TATCTTCAGGAATCAGTCGCTATTTGCTTTTGTTCTGATCTTGCCGCTTGCGCATTGCAT
ACTTAAAAAATCAAAATGAGTGATTCGGAGCCAGGTGAATACAAACAGAACAATCATAGA
AGTTCAGGAGAAAGATCTCGGTCCCCGACCCCGGCTTCAAGACATTCAGGTACCCCTGTA
AAACGACGTTCGTACAGTAGATCCCGATCAAGATCGAGATCTTACAGATCAAGGTCTAGA
TCACGTTCTTACAGAAGGAGAAGTCGTTCTCGAAGTTATAAACGTTCCCGAAGTCCTTCA
CCACGTCGCCGATCTAGAAGTCCAGGGCGGCGTTCTCACTCAGACTCGAGAAGTCCCGGA
CACAGACGATCTTACACCCATTCCCGATCTTCTAAAAGTCGTTCTCCGATGTCCGATAGA
AAGCGTCATATTGGTGACAGGGTAAACAGACTTAAGATGGACCCTCCAACTGGTCGGTGT
CTTGGTGTGTTCGGACTGAGTCTTTATACTACTGAGAGCGACCTGCGAGAAACCGGCAGA
TCTCGAGGTTTTGGCTTTGTATATTTCGAGTCCGGAAAGGATGCTTTGGAGGCGAAAGAA
AGAGCCAACGGCATGGAACTTGATGGCAGACGGATCCGTGTAGATTTTTCTATCACAAAA
CGTCCACACACTCCTACTCCTGGAGTCTATGTTGGACGGCCGACATCGTCGAGCTACGGA
CCGCCACGTAGAGGAAGACACGATCGTAGCAGAGACGATGGTCGCCGTGACTACCGCAGA
CGTAGCCCATCTCCTTACAGCCGTAGACGCTCGCCAAGTCCCTATCATAGAGACAGATCT
CCATATCGCAGTAAGTCGCTACTAAATTCCGCTGGGCAAAAGTAAAACGCTAGCAAATGC
TAGATCTGTGTAAAGTTTTTATTCATTCTGCTATTTGACATTACATTTTTATTCTGTCTG
TAGTCATTGGTTTTTTAATAACCAATGTTATCGCTGGCTCGCATCATCTTTCTCTGATAA
GTTCAGCTCTTTAACTCGGATGTATTCAGATGAATGCACGGCCATTCTCTGGCCCCATTC
TCGAAATTAACGTAACCTTATTGTGCTTTTCGAAGGTTTTTCTTCAAGAAAGAAAATTGA
ATTGATCGTATAGAAGATCGAAAATTAGCGAAAAACGAAAAATTTAAATCAAGTAGAAAA
TGTGAAGAGAAGTTTGTAGAAACTGCAAGAAAGAAGTCGCGATGGTCGACAAACAAACGC
GCGAAAATCCTTAATGAAAATTAGGAATGAAATACGAAGAGTAGCACATAGGTTACAATA
GAATGCGTAAGTCTAAAGGCTTTCTTGTTGTGATTCGGCCTGTGTTTTACAGTAATCCGT
TTGTCCACGGTATGAAAACACGGTTGGTGGTGGTGGTGAGTTGCAAAACC

InterProScan

SUPERFAMILY
RBD_domain_sf (IPR035979) - T[127-223] 1.63E-21
SMART
RRM_dom (IPR000504) - T[135-190] 8.4E-6
Pfam
RRM_dom (IPR000504) - T[149-188] 5.6E-9
ProSiteProfiles
RRM_dom (IPR000504) - T[149-194] 10.94
Gene3D
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[151-240] 2.7E-13

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRA2B_HUMAN 60.131 % 152 6.09E-45
TRA2A_HUMAN 62.81 % 141 1.23E-40