- Region 'REG00001017' >
- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S71.g09264.01.t
Possible name(s)
BARHL1; MSX1; MSX2
Gene model
Location
S71 [100,136 / 102,395]
Amino acid sequence
Length: 434
>Harore.CG.MTP2014.S71.g09264.01.p
MDLPERVRTVDALSRPRHKRRPPELNERDNGRLEWKWGKPKRILKRITTKMLSENSEIEQ
ATLNQEIAVSDDSNSEENFSGITEENTKVMDDPEKSDKEDLPKSEEKNPKKRKFSFSIEY
LIGNSEPKKKHMQNSNFTQYVSPYVGKYYPDRDTKAENDSDAVCMKNYHHLSTHGRTEEY
APVRTNSVSPNEGFFHEETSKYSPGSNSRFSLTELSPPARQFSPQSQPLHSTPAKKSENI
GTAFCNLRKHKPNRKPRTPFTTHQLISLEKKFMAKQYLSIAERAEFSASLQLSETQVKIW
FQNRRAKSKRLQEAKLEQSNFVAAACRALRSEQGNLSSSHLYSGYPPAGLFPHIHSTNIR
LGGAAKYPEIQSPKVPENSFVTSIDFRATALQQMHIPTNVAEQGFSSAFSSFYPGKIADH
RRSISSSLPLPILQ
Nucleotide sequence
Length: 1,305
>Harore.CG.MTP2014.S71.g09264.01.t
ATGGATTTACCGGAACGAGTCAGAACCGTAGACGCTCTGTCTCGCCCAAGACATAAAAGA
CGTCCGCCAGAATTGAACGAGCGTGATAATGGGAGGTTGGAGTGGAAATGGGGGAAGCCC
AAGAGAATTTTGAAACGCATAACTACCAAAATGTTGAGTGAAAATTCTGAAATAGAACAG
GCAACTTTGAACCAGGAAATTGCAGTATCCGATGATTCGAATTCAGAAGAAAATTTCTCC
GGAATCACGGAAGAAAACACAAAAGTTATGGACGATCCGGAAAAATCGGACAAGGAGGAC
CTACCAAAGTCTGAAGAGAAAAATCCAAAGAAACGGAAATTTTCCTTCAGCATCGAATAT
CTAATCGGTAACTCCGAACCGAAGAAAAAGCATATGCAGAATAGCAATTTTACTCAATAC
GTTTCACCTTACGTGGGAAAGTATTACCCCGATCGCGATACGAAAGCTGAAAATGACTCT
GACGCCGTGTGTATGAAAAATTATCACCATCTCTCAACCCACGGTAGAACGGAGGAATAC
GCGCCTGTTAGGACCAACTCGGTATCGCCGAATGAAGGATTTTTTCACGAAGAAACATCG
AAATACTCACCAGGAAGTAATTCTAGATTCAGCTTAACAGAATTGTCACCTCCGGCGAGA
CAGTTTTCTCCACAATCGCAACCACTCCATTCTACACCCGCAAAAAAGTCAGAAAATATA
GGTACAGCATTCTGTAATCTACGGAAGCACAAGCCAAACAGAAAACCAAGGACCCCGTTT
ACAACACATCAATTGATATCTTTGGAAAAGAAGTTTATGGCAAAACAATATCTGTCCATA
GCGGAGCGGGCAGAATTTTCAGCTTCTTTACAGCTTTCTGAAACGCAGGTTAAAATTTGG
TTCCAAAACAGAAGAGCAAAGTCCAAACGATTGCAGGAAGCCAAACTGGAGCAGAGTAAT
TTCGTTGCAGCGGCTTGCCGCGCACTGAGATCGGAGCAGGGTAACTTGTCTTCTTCGCAT
CTGTATTCGGGTTATCCACCAGCAGGACTCTTCCCTCACATTCATTCGACGAATATACGT
CTAGGTGGAGCTGCTAAGTATCCCGAAATTCAGTCGCCTAAAGTTCCAGAAAATTCCTTT
GTAACAAGCATCGATTTCAGAGCTACAGCACTACAGCAGATGCACATACCGACAAATGTT
GCAGAGCAGGGTTTCAGCTCGGCGTTTTCCTCCTTTTACCCCGGGAAGATCGCAGATCAT
CGTCGTTCAATATCGTCTTCTCTTCCGTTACCTATTCTTCAATAA
| SUPERFAMILY |
Homeobox-like_sf (IPR009057) - T[243-312] 1.15E-22 |
| ProSiteProfiles |
Homeobox_dom (IPR001356) - T[251-311] 19.953 |
| SMART |
Homeobox_dom (IPR001356) - T[253-315] 4.8E-24 |
| Pfam |
Homeobox_dom (IPR001356) - T[254-310] 5.4E-21 |
| CDD |
Homeobox_dom (IPR001356) - T[254-312] 1.59052E-19 |
| PRINTS |
Homeobox_metazoa (IPR020479) - T[275-286] 1.0E-5 - T[290-300] 1.0E-5 - T[300-309] 1.0E-5 |
| ProSitePatterns |
Homeobox_CS (IPR017970) - T[286-309] . |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| MSX1_HUMAN | 62.617 % | 130 | 7.68E-35 |
| MSX2_HUMAN | 62.037 % | 129 | 1.62E-34 |
| BARH1_HUMAN | 39.855 % | 81.3 | 5.85E-17 |