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  5. Transcript 'Harore.CG.MTP2014.S7...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S734.g03093.01.t

Possible name(s)

SDE2; SF3A3

Gene model

Harore.CG.MTP2014.S734.g03093

Location

S734 [5,210 / 14,325]

Sequences

Amino acid sequence

Length: 501

>Harore.CG.MTP2014.S734.g03093.01.p
METILEQQRRLHEEKERLYDAMTKESMAKKSGMRETINSDHRMKHLLDSTMDIAVQLQDL
YEDNDELRKQEIQAIGGSNAFNEFYKRLREIKEFHKQHPNEIFVPMSMEFEELDKMRENS
SDESSALVEFTDEESYGKSLDLHESHMKYLNLKGIEKVSYIKYLDSFDRLFEIAKDKKNA
YYRLYLEGLLEYLVSFIERTKPLLSLITEFDKVSKKFESQWEAAEFPGWGKEAGSALAHS
GAHLDLSVFSSYEELASLGLDRLKSALMALNLKCGGTLDERASRLYSTKGKTLDEIEPTL
FTKNKMKLPKKVKPKKDKDIAFVEAQIYHLVEIVSEQRAFTKENVQRRQARTDTERDQDE
EEEGSDSDSGDDDDEIIYNPKNLPLGWDGKPIPYWLYKLHGLNINYSCEICGNQTYRGPK
AFQRHFAEWRHAHGMRCLGIPNTAHFANVTKIDDAMALWSKIKEMKNCERWNPDQEEEFE
DSAGNVVSKKTYEDLKRQGLL

Nucleotide sequence

Length: 2,130

>Harore.CG.MTP2014.S734.g03093.01.t
TAGCCATACATATCCAATATGGAAACTATATTAGAACAGCAACGTAGACTGCATGAAGAA
AAAGAAAGACTGTATGATGCGATGACGAAAGAAAGTATGGCCAAAAAATCCGGGATGCGG
GAAACAATCAATTCAGACCATAGAATGAAGCATTTGTTAGATAGCACCATGGACATTGCT
GTTCAGCTTCAAGATCTATACGAAGACAATGATGAACTCAGAAAACAAGAAATACAGGCA
ATCGGTGGCTCTAATGCCTTCAATGAATTTTACAAGCGTCTACGTGAGATAAAGGAATTC
CATAAACAGCATCCAAATGAGATTTTTGTGCCGATGTCAATGGAGTTTGAAGAGCTCGAC
AAAATGCGTGAAAACTCGTCAGATGAGTCATCTGCTTTAGTGGAATTCACTGATGAAGAA
TCGTATGGGAAATCACTTGATCTTCATGAATCTCATATGAAATACTTGAACCTGAAAGGC
ATAGAAAAAGTTAGCTACATCAAATACCTTGATAGCTTCGATAGATTATTTGAAATTGCG
AAAGACAAAAAAAATGCCTATTACCGCCTTTATTTGGAGGGACTGCTCGAGTACCTAGTT
TCCTTCATCGAAAGAACAAAACCTCTTCTGAGCCTCATTACTGAATTTGACAAGGTGAGC
AAGAAGTTTGAATCACAGTGGGAAGCTGCCGAGTTCCCGGGCTGGGGTAAAGAAGCTGGA
AGTGCTTTGGCTCATTCTGGGGCCCATCTAGATTTGAGTGTCTTTTCGTCATACGAGGAG
TTGGCATCCTTAGGCCTTGATCGTCTGAAATCTGCACTGATGGCTCTGAATTTGAAGTGT
GGTGGAACTCTTGATGAGAGAGCTAGCAGACTATACTCTACAAAAGGAAAAACACTAGAT
GAAATCGAACCTACTTTATTCACAAAAAACAAAATGAAATTGCCTAAAAAAGTCAAACCG
AAAAAAGACAAGGACATAGCTTTCGTGGAAGCTCAGATCTATCACCTTGTTGAAATTGTA
AGTGAGCAAAGAGCTTTCACTAAGGAAAATGTGCAAAGGCGTCAGGCAAGAACGGACACA
GAGAGGGATCAGGATGAAGAGGAGGAAGGCTCGGATAGTGACTCTGGAGATGACGATGAT
GAGATAATATACAACCCGAAAAATCTTCCTCTTGGCTGGGATGGAAAGCCGATTCCTTAT
TGGTTGTATAAGCTCCATGGCTTGAACATCAACTACAGTTGTGAAATATGTGGCAATCAA
ACATATAGAGGTCCGAAAGCCTTCCAGAGACATTTTGCGGAATGGAGGCATGCTCATGGA
ATGCGCTGTTTGGGAATTCCCAATACTGCTCACTTCGCCAATGTGACAAAAATTGATGAT
GCAATGGCATTATGGTCCAAGATAAAAGAAATGAAGAACTGTGAAAGATGGAACCCTGAC
CAAGAAGAAGAATTTGAAGATTCTGCTGGTAACGTAGTGTCAAAAAAGACCTATGAGGAT
CTCAAAAGACAAGGATTGTTGTGAAGAATAGAACTGCATGAGCTTCCCTTGTTTGAAGTG
AAATTGTTATGAGATCTGAAGGTTTTTTTTTTTAGAGGTCTCACTGGATATAAATATATT
CCTTAACAAGAAATCTTTAACTGTTTGAGTACAGTTGAGTATCGTTAGTATCTGCATTTT
GTTTACTAATTTCTGCATTTCTTTCTAATAAATGATAAAATAGACGCTGATGAGTTGGCC
TAATGCAGTGGAGCGTTATGTGGTTCAAGTGATCCACAGAGACTTTTGGTGGTCCATGGT
TACCAATGAAGTTTATAACATATACACATTTAGTTTTTTTGAAGTAGCAATTATGGTAAC
CAATGGTCAACAAAAAAATTGTAAAAGAATAATGGTCCATAGTCACGGAAAGGTTGTTAA
TCACTGGCCCAACATACAACCAAAATTATTTCTTGAGCAATTGGTCTGTAGCGTTCAGTT
CTAGGTTGTGGGAATGAATGAAAATACATATGTCATTTCCTGTAAACATATAATATGTCG
CATAACTCTGTTTATACCCCTTCTCACACTGACTATGTATCAAAAAGGACCGGTTATCTT
AGTAAAGAAAATGTTTAACTGCAGTTGGGT

InterProScan

PANTHER
SF3A3 (IPR031776) - T[1-501] 4.5E-180
Pfam
SF3a60_bindingd (IPR021966) - T[74-100] 2.8E-12
Pfam
SF3A3_dom (IPR031774) - T[129-204] 8.0E-22
Pfam
DUF3449 (IPR024598) - T[324-500] 2.3E-76
ProSiteProfiles
Matrin/U1-C_Znf_C2H2 (IPR000690) - T[406-437] 8.937

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
SF3A3_HUMAN 67.066 % 676 0