- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S76.g01900.01.t
Possible name(s)
RBMS1; RBMS2; RBMS3
Gene model
Location
S76 [171,919 / 206,467]
Amino acid sequence
Length: 833
>Harore.CG.MTP2014.S76.g01900.01.p
MPSVHPQWSGGSTSIQPQWQAYSIMQPGMRFPVPPSLIPIPHQIHCPVSMTKQLLVFRSL
LRHSAVSSVIVQSRALRHRNEEEALLPLHCAVSQFSIDHIASVKRQSFSSFPSVQMLLYV
IQIRHTQKASNLLLKCFIAVHTRTIICIYHFYTIQVSLPFQPYAHATAQHHARNMPPPSP
SIASSTSSSQHSNSTGSPSSGSGSPQNMNLQNNSANQQSGINNFNGHSQMNGQGDLSKTN
LYIRGLTPNTSDEDLVNLCKQYGKIVSTKAIIDPQTSLCKGYGFVDFDRYESAVLAVTSL
KAKGIQAQMAKQQEQDPTNLYLSGLPPNFNEHDLEQMLLPYGQVISTRILRDSNGVSKGV
GFARMESKEKCEVIISKFNGKYLTGGNTHSTEPLLCKFADGGPKKNKQHQKFMANGRTWR
DGEMPFPYDPAALTHNGMAPNRIMMQPYLTGPTNPAYQMQAPPTWMQPPPYVVQPHVTTS
GTVISSMDPNMHMHPSVMPQLSQLTAQMTQLQLSPNPGAISVNNDDVVGSLYQSVPAPAK
ALGNESCMQEIAESCSVLVNAHHTRSQAITGLSIQGENYENMVGAVKNQEVQSSFQPVQI
FPAIQSQALVSSDPPGFSHLDDNRMMYTEASPVPVSSLYASCPVNQDIRCTPKIKVFDTT
VKPPFSPPQNHVCGTLLSQTLPQLTSAAIQWSLPFMASLEPAFPFLTQSAYPLACQDNLS
GSIVINPISPNEFQYGPNGVAGPYIPQYSATPSLPLQIEDGMGASVNNHQQQPVVTVSSQ
ATKLCERLMILTFLKFLVYYSAVKTMKRRRRKILLNRYDECVFRSHAIPPSSK
Nucleotide sequence
Length: 2,622
>Harore.CG.MTP2014.S76.g01900.01.t
TATTCAGATACAGGTAGAATAAAATTTTTAGGCCTACTTACTGTGAACCTCTCTGGTAAC
AACTGTGATCCATTGTATTTCTGTACCTGTTTGAAGTACTGATTTAAGAGGACATCAAAG
ATGCCCAGTGTACATCCACAGTGGTCTGGTGGTTCAACCAGTATCCAACCCCAGTGGCAA
GCCTACTCCATCATGCAACCCGGCATGCGCTTCCCCGTTCCTCCATCCCTCATACCTATA
CCTCATCAAATTCATTGTCCTGTATCTATGACTAAACAGCTTCTCGTATTTCGTTCACTA
CTTCGTCATAGCGCAGTTTCTAGCGTCATTGTTCAGAGTCGTGCGCTGAGGCACCGGAAT
GAAGAGGAGGCACTGCTTCCGCTTCATTGCGCAGTATCGCAGTTTTCAATTGATCACATA
GCGTCAGTTAAAAGGCAAAGCTTCTCAAGTTTTCCCAGCGTTCAAATGCTGCTTTACGTT
ATTCAGATTAGGCATACACAAAAAGCCAGCAACTTATTGCTGAAGTGTTTTATCGCCGTA
CACACAAGGACCATCATTTGCATATATCATTTCTATACAATACAAGTTTCTCTTCCTTTT
CAGCCATACGCTCACGCAACTGCCCAGCACCACGCTCGCAACATGCCGCCCCCGTCTCCA
TCCATCGCCAGTAGCACCTCCTCTTCTCAACATTCCAACAGTACAGGTAGTCCTTCAAGC
GGCTCTGGTAGTCCTCAAAATATGAACCTTCAGAATAACTCGGCAAACCAGCAGAGCGGT
ATCAACAACTTCAACGGTCATTCGCAGATGAACGGCCAGGGCGATCTGAGCAAGACTAAT
CTGTATATAAGAGGTCTGACGCCAAACACGTCGGACGAAGATCTCGTAAATCTATGCAAA
CAATATGGAAAAATAGTATCCACCAAGGCTATCATCGATCCACAAACCAGCCTTTGTAAA
GGATATGGATTTGTCGATTTTGATCGCTATGAGTCCGCTGTCCTTGCTGTCACCTCGCTC
AAGGCCAAGGGAATTCAAGCTCAAATGGCGAAGCAACAAGAACAAGATCCTACTAATCTC
TACCTATCTGGCCTTCCACCTAATTTCAATGAGCACGACTTAGAACAAATGCTCCTTCCT
TATGGTCAAGTGATCTCTACCAGAATCCTTCGTGACAGCAATGGTGTCAGCAAGGGAGTA
GGATTTGCCAGAATGGAATCAAAGGAAAAATGCGAAGTCATTATCTCAAAGTTTAATGGA
AAATATCTAACGGGAGGCAACACCCACAGTACTGAGCCCTTACTGTGCAAGTTTGCTGAT
GGAGGACCAAAGAAAAACAAGCAACATCAGAAGTTTATGGCTAACGGACGGACCTGGAGG
GATGGCGAAATGCCTTTTCCTTATGACCCCGCCGCCCTGACCCATAATGGGATGGCTCCC
AATCGCATCATGATGCAGCCATACCTAACAGGGCCAACTAATCCCGCTTACCAGATGCAA
GCCCCACCAACATGGATGCAGCCTCCTCCTTATGTTGTACAGCCTCATGTCACCACTTCT
GGCACTGTGATATCGTCCATGGACCCCAATATGCACATGCACCCGAGTGTGATGCCCCAG
CTCAGTCAGCTAACCGCCCAGATGACACAGCTTCAACTCTCACCAAATCCTGGAGCCATT
TCGGTAAATAATGATGACGTTGTCGGTAGTTTATACCAGTCTGTGCCAGCTCCCGCAAAG
GCCTTAGGAAACGAATCATGCATGCAGGAAATAGCAGAAAGTTGCAGCGTCCTAGTTAAC
GCTCACCATACCAGGTCTCAGGCTATAACTGGCTTGTCTATTCAAGGAGAGAATTACGAG
AATATGGTAGGAGCCGTCAAGAATCAGGAAGTTCAAAGCTCTTTTCAGCCTGTTCAGATA
TTTCCAGCTATTCAGTCTCAGGCATTAGTAAGCAGTGATCCTCCTGGATTCTCTCACTTG
GATGATAATAGAATGATGTATACTGAAGCGAGCCCGGTCCCTGTTTCATCACTATACGCA
AGCTGTCCAGTAAATCAGGACATCCGATGCACTCCGAAAATAAAAGTTTTCGACACGACG
GTCAAGCCGCCGTTCAGTCCGCCCCAGAACCATGTCTGCGGCACACTGTTGTCACAAACC
CTGCCACAGTTGACTAGCGCCGCCATACAATGGAGCTTGCCATTCATGGCGTCTCTAGAA
CCGGCATTTCCTTTCTTAACGCAGTCTGCTTATCCGTTAGCATGCCAAGATAATCTCAGT
GGTAGCATCGTCATTAATCCGATTTCACCAAATGAGTTTCAATACGGACCAAATGGTGTT
GCTGGCCCATACATTCCACAATACTCAGCGACTCCTAGCCTACCTTTACAGATAGAAGAT
GGTATGGGTGCTTCCGTCAACAACCACCAACAGCAACCAGTAGTGACAGTGAGTTCACAA
GCGACCAAATTATGTGAAAGATTGATGATTTTGACTTTTCTGAAATTTTTGGTTTATTAT
TCCGCTGTGAAGACAATGAAGCGAAGAAGAAGAAAAATACTCTTGAATCGTTATGATGAA
TGTGTTTTTCGTAGTCACGCTATTCCCCCGTCGTCCAAGTGA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[201-308] 3.3E-18 - T[309-409] 4.2E-19 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[238-385] 1.76E-32 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[239-312] 14.112 - T[318-401] 14.146 |
| SMART |
RRM_dom (IPR000504) - T[240-308] 1.1E-13 - T[319-392] 2.7E-13 |
| Pfam |
RRM_dom (IPR000504) - T[241-303] 3.0E-13 - T[320-385] 5.9E-12 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RBMS2_HUMAN | 48.378 % | 285 | 3.89E-88 |
| RBMS1_HUMAN | 55.446 % | 304 | 1.96E-95 |
| RBMS3_HUMAN | 56.463 % | 305 | 1.9E-95 |