- Transcript 'KH2012:KH.C5.551.v1....' >
- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S790.g02244.01.t
Possible name(s)
LRFN1; LRFN5; LRRC24
Gene model
Location
S790 [3,808 / 7,460]
Amino acid sequence
Length: 867
>Harore.CG.MTP2014.S790.g02244.01.p
MHSMDLRCLNVALFLLFLVSISECFKPLICPVSCICRNRRCSNNTDVYLCEDSTVLFSVD
CKNLHDGQLYSLPESVDTFLVEEFLNSTELDKIIHTTTPNIRSLTVKINDIPELHWDNSN
MVSILILNLSHSQLEFFPAFVSNFSTLKLLNVSSSGISGDIGIVLDSQHLLVLDLARNQI
ESFKLTGSLPNLDRIILKNNGLYMLPEFGELPLLKSLDLSYNQIVMYSSLVKRDTKDLSR
KVRNCAIALPNQIESLFYRGNQLWRVPAKECSLLSGLLKLQHLYLEYNSILSITDNIFPD
VIYHNLQTLSLDHNRIHYISEGAFIRFESLKVLSISNNQLRHVPVKLIEQIGTQLQNISE
KPPAGFEVHLTDNPFSCDCTQARALEVLESGNTTSHYALRNEILCYYPQAFSSMRLIDLL
VHDLECTNATLKYSRNVSSPEYEDCTIRCDFRGLPHPEVWWISPIQEHISLDKLANDPIL
RNSYSLSDNGNELTILDIEFSKTGVFMCIGNNSISTSIGNVTVGVIRQPISSIVAIVVSA
AAFMVAILVNSINLCQYYCEHLSDKREMRKMQAMIFEMESPLKSKQRGLHESEASINANK
YYTKYDFTCQQLFLDTVMKGAHTVKRTLHDARYSEFSNNVWEYAAHLRDRLHIELPTSVQ
LPRVSMPTISMPNITMPSMPNFQSINTNIEKLGTSVMHRSHNLATSVGSVFTLRWLRSGN
SDNESDSDAEPIGVTHVEVYVHQEEDDMSSNQLLEGTPLPEKIKTTETNKFNKIFFLRQS
ANAVIKKEEGELKTLTPRRTKSVRFTETTRPSLIPLEPGMRRSASITFLPQVYNEPTAAN
NENRFSDIASTSGQSSDRKAFEFETTV
Nucleotide sequence
Length: 2,850
>Harore.CG.MTP2014.S790.g02244.01.t
AGTTTCTACGTTTCTACTTTCTTTAAAGTCCGTTGTTATTATACCGAGATTACTATAACA
GCCTATGTATTCACAACGGCCGAGACATCAGTGGCAAATGTTCCGATAATGCGTTGTTCC
GTTAATGCATAGTATGGATTTGAGGTGTCTTAATGTGGCGTTATTTCTACTGTTCCTGGT
CAGTATTTCTGAATGCTTCAAGCCTTTGATCTGCCCAGTCAGTTGCATTTGTCGAAACAG
AAGATGTTCGAATAACACTGATGTATATTTGTGTGAGGATTCAACTGTGTTATTCAGTGT
TGACTGCAAGAACTTGCATGATGGGCAGCTGTACAGCCTTCCCGAATCAGTGGATACCTT
TTTAGTTGAGGAGTTCTTAAACAGTACAGAACTTGACAAAATCATCCACACAACGACTCC
CAATATCCGTTCTCTTACGGTAAAGATCAATGATATTCCTGAACTACATTGGGATAACAG
TAATATGGTGAGCATCCTGATATTGAACCTGAGTCACAGTCAGTTAGAATTTTTCCCCGC
ATTTGTCTCAAATTTTTCCACGTTGAAGCTCCTGAACGTGAGCAGTAGTGGAATTTCTGG
AGACATTGGCATAGTCTTAGACAGTCAGCATTTACTTGTCCTAGATTTAGCAAGAAATCA
AATTGAAAGTTTCAAGCTGACGGGTAGTTTACCAAACCTTGATAGAATCATTCTGAAAAA
CAATGGCCTCTACATGCTGCCAGAATTTGGAGAATTGCCTCTTCTGAAATCATTGGATTT
ATCGTACAACCAAATTGTTATGTACAGCTCTCTCGTGAAACGGGATACCAAAGACTTGTC
AAGAAAAGTAAGAAACTGTGCAATAGCTCTACCAAATCAAATAGAATCTCTCTTCTATCG
TGGAAATCAGTTATGGAGAGTACCAGCGAAAGAATGCAGCCTGCTGTCAGGCTTGCTGAA
GTTACAGCACTTGTACTTGGAGTATAACTCCATACTATCAATAACTGATAATATATTTCC
TGATGTCATATACCACAATTTACAGACCTTATCACTGGATCACAACAGAATTCATTACAT
AAGTGAAGGTGCATTCATAAGATTTGAAAGCTTAAAAGTATTGTCTATTTCTAACAATCA
GCTACGACATGTACCAGTCAAACTCATTGAACAGATTGGAACTCAGTTACAAAACATTTC
TGAAAAACCGCCAGCTGGATTCGAGGTTCATCTAACTGATAATCCATTTTCTTGTGACTG
TACTCAAGCTAGAGCACTGGAAGTGCTGGAGTCTGGAAATACAACATCTCACTATGCTCT
CAGAAACGAAATTCTTTGTTACTATCCCCAAGCATTCTCTAGCATGAGGTTGATCGATCT
ACTCGTTCATGATTTAGAATGTACAAATGCGACATTGAAATACAGCAGAAATGTCAGTAG
TCCAGAGTACGAAGATTGTACAATCAGGTGTGACTTTCGTGGGCTCCCACACCCAGAAGT
GTGGTGGATATCCCCCATTCAGGAACACATTTCCTTGGATAAATTAGCAAATGATCCCAT
ACTGAGGAACTCATACTCTTTATCAGACAACGGCAATGAATTGACTATACTTGATATAGA
GTTCTCTAAAACAGGAGTATTCATGTGCATCGGAAACAATTCCATATCAACGTCTATTGG
AAACGTAACAGTCGGTGTTATAAGACAACCTATCAGCTCAATCGTAGCTATAGTTGTATC
GGCGGCCGCTTTCATGGTTGCTATCCTTGTCAATAGCATTAATCTTTGCCAATACTACTG
TGAACACCTGTCCGATAAACGAGAGATGCGCAAGATGCAAGCAATGATTTTTGAAATGGA
ATCTCCACTGAAATCGAAACAAAGAGGGCTGCATGAATCTGAGGCTTCAATCAACGCGAA
CAAATACTACACGAAATATGACTTTACATGCCAGCAGTTGTTCTTGGATACTGTCATGAA
AGGTGCTCACACTGTCAAGAGGACTTTGCATGATGCAAGATATTCAGAATTTTCCAACAA
TGTATGGGAATATGCTGCGCATCTAAGAGACCGACTTCACATAGAGCTCCCAACATCGGT
CCAATTGCCTAGAGTTTCAATGCCAACTATCAGTATGCCCAACATAACGATGCCGAGTAT
GCCCAATTTCCAGTCTATAAATACAAACATTGAGAAATTGGGAACCAGCGTTATGCATCG
GAGTCATAACCTTGCTACTTCTGTAGGTTCTGTGTTTACCCTGCGTTGGCTGCGATCTGG
CAATAGCGATAATGAAAGTGATTCAGATGCTGAGCCCATTGGCGTGACTCATGTTGAAGT
TTATGTTCACCAAGAGGAAGATGACATGTCAAGCAACCAGCTGTTGGAAGGAACTCCCCT
ACCAGAGAAAATAAAAACCACAGAAACAAACAAATTCAACAAGATATTCTTCCTAAGACA
ATCGGCTAATGCTGTAATCAAAAAGGAAGAGGGCGAGTTAAAAACATTGACACCAAGGAG
GACAAAATCAGTGCGTTTTACAGAAACTACAAGACCCTCTTTGATTCCACTTGAACCTGG
GATGCGGAGAAGCGCTAGTATTACATTTCTTCCCCAAGTTTACAATGAGCCAACTGCAGC
AAACAACGAGAATCGTTTTTCTGATATTGCATCTACAAGTGGACAGTCATCCGACAGAAA
AGCATTTGAGTTTGAAACAACAGTGTAATTCTCATAAAGTATATTTTATCTATTGCTATA
TATTCTGTAATGTATGTATGTGTTGTGTACATTGTGTTTGAGTATACATTCTAAGTTCAG
AAATGTTATAATAAAATCAATGATAATGGA
| Gene3D |
LRR_dom_sf (IPR032675) - T[34-232] 1.7E-17 - T[233-431] 5.1E-26 |
| SMART |
Leu-rich_rpt_typical-subtyp (IPR003591) - T[121-144] 320.0 - T[189-210] 250.0 - T[211-234] 43.0 - T[277-300] 0.84 - T[303-326] 7.3 - T[327-350] 2.5 |
| ProSiteProfiles |
Leu-rich_rpt (IPR001611) - T[169-190] 6.819 - T[191-212] 5.895 - T[213-234] 6.334 - T[279-300] 6.957 - T[305-326] 7.735 - T[329-350] 6.495 |
| Pfam |
Leu-rich_rpt (IPR001611) - T[305-344] 1.6E-8 |
| ProSiteProfiles |
Ig-like_dom (IPR007110) - T[408-519] 7.685 |
| SUPERFAMILY |
Ig-like_dom_sf (IPR036179) - T[431-522] 8.85E-9 |
| Gene3D |
Ig-like_fold (IPR013783) - T[432-525] 2.5E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|