- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S795.g06210.01.t
Possible name(s)
HNRNPA1; HNRNPA1L2; HNRNPA3
Gene model
Location
S795 [11,853 / 21,297]
Amino acid sequence
Length: 576
>Harore.CG.MTP2014.S795.g06210.01.p
MDAGEISDIGSRFNSLIVCVCNRRFIPFLCCFFQLSIYRALHSYYYLNFLSNSIEGKKTQ
KPKEMKTEVEENGNEEITEPEQQRKLFIGGLSFDTTDESLRHYFKQFGDIVDCIVMKDAQ
TKRSRGFGFVTFKKINMVDVAMEQRPHKLDGRTVTPKRAVSREDSEKPGAHATVKKIFVG
GIKDDTTEENLKNYFSKFGPVEIAEVMMDRESGKKRGFAFVTFADHDPVDKIVSQKYHTV
NGHNCEVRKALPKTELDKAKAKQQAKYDDKPPGKYPPPPEYMRDRHEYDRYGPPRSDPRY
SPPPSRYYDRYESGYYDRYDQGYDRYHAASYERYPPSSHDRHAPPREYERYAHPSDRYGP
PSSSEYDRYRDYPREYPPREYPSSRSSSEYYRREGYSERPPYESYAPPRESERDRYAPPP
SSSERSSSSAAPVAYAERSSTAAYSSTAQPSSYDRDPRDSRDSRDPYGRTSSSAYSTSAS
AVPSSYDAYARPKTDPPSAPSGYDYAAYSQSSSSYGPVKSASSYSSRSAGPYGRKTLVSA
VMVAQARHLMELLAPTEQARLRVAINDRCRKELSKF
Nucleotide sequence
Length: 1,731
>Harore.CG.MTP2014.S795.g06210.01.t
ATGGACGCGGGAGAAATTAGTGATATAGGCTCGAGATTCAATAGTTTAATAGTTTGCGTT
TGCAATCGACGTTTCATTCCTTTTCTGTGTTGTTTTTTCCAGCTGTCGATATACCGGGCG
TTACACAGTTACTATTACTTGAATTTTTTATCTAACTCAATCGAAGGAAAAAAGACGCAG
AAACCGAAAGAAATGAAAACCGAAGTCGAAGAAAACGGCAATGAAGAAATTACAGAACCA
GAACAACAGAGGAAGCTTTTTATTGGAGGTCTTAGTTTTGACACCACTGATGAGAGTTTG
AGACATTATTTCAAGCAGTTTGGTGACATTGTTGATTGCATCGTAATGAAAGATGCTCAA
ACTAAACGTTCCAGAGGTTTTGGATTCGTCACATTCAAGAAAATTAACATGGTTGACGTT
GCTATGGAACAGAGACCCCATAAACTCGATGGACGCACCGTTACGCCGAAAAGAGCTGTA
TCACGAGAGGATTCCGAAAAACCAGGCGCTCATGCAACCGTGAAGAAAATATTCGTCGGT
GGAATCAAAGACGATACCACGGAGGAGAATTTGAAAAACTATTTTTCAAAATTTGGACCG
GTTGAAATCGCTGAGGTCATGATGGACAGGGAGAGTGGAAAGAAACGTGGATTTGCATTT
GTAACTTTCGCTGATCACGATCCGGTTGACAAGATTGTCAGTCAAAAGTATCACACAGTG
AATGGACACAACTGTGAAGTTAGGAAAGCCCTTCCTAAAACAGAACTTGACAAAGCTAAA
GCAAAACAACAAGCCAAATACGATGACAAACCACCTGGGAAATACCCTCCGCCCCCAGAA
TACATGAGAGATCGCCATGAATACGACAGATACGGACCTCCAAGAAGCGATCCACGTTAT
TCTCCTCCACCTTCACGTTATTATGACAGATACGAATCAGGGTATTATGACAGATATGAC
CAAGGCTACGACAGATATCATGCTGCATCCTATGAGAGATACCCACCCAGCAGCCATGAC
CGCCATGCTCCACCAAGAGAATACGAACGTTATGCACATCCTTCTGACAGATATGGACCT
CCATCAAGCAGCGAATATGATCGTTATAGAGATTATCCGAGAGAATATCCTCCAAGAGAA
TATCCATCATCTCGAAGCAGCAGTGAATATTACAGACGTGAAGGATACAGCGAAAGACCA
CCATATGAGAGTTATGCTCCACCAAGAGAAAGTGAGAGGGATCGTTATGCACCTCCTCCA
TCATCCTCTGAAAGATCTTCATCATCAGCCGCTCCTGTAGCTTACGCAGAGCGTAGCAGT
ACTGCCGCCTATAGTTCAACTGCCCAGCCTTCAAGTTATGACAGGGATCCACGTGACAGC
CGCGATTCTCGTGACCCGTACGGCCGTACATCTAGCTCAGCTTACAGTACTTCAGCGAGC
GCTGTGCCATCTTCTTATGATGCATATGCTCGTCCAAAGACTGATCCTCCAAGTGCCCCA
TCTGGTTATGATTATGCTGCATATTCTCAGAGCAGTAGCAGCTATGGACCTGTGAAAAGT
GCCAGTTCCTATAGCAGCCGTTCTGCTGGACCATATGGAAGGAAGACCCTAGTTTCTGCG
GTTATGGTAGCTCAAGCACGCCATCTAATGGAGCTTCTAGCGCCTACGGAACAAGCTCGG
CTCCGAGTCGCTATTAACGACAGATGTCGAAAGGAATTGAGTAAGTTCTGA
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[63-171] 1.3E-27 - T[172-250] 1.7E-24 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[80-169] 5.1E-27 - T[171-255] 8.6E-24 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[84-167] 17.916 - T[175-252] 17.046 |
| SMART |
RRM_dom (IPR000504) - T[85-157] 7.6E-25 - T[176-248] 2.1E-23 |
| Pfam |
RRM_dom (IPR000504) - T[86-153] 2.4E-17 - T[177-239] 2.0E-16 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ROA1_HUMAN | 71.271 % | 282 | 2.48E-90 |
| RA1L2_HUMAN | 69.73 % | 282 | 5.72E-91 |
| ROA3_HUMAN | 71.823 % | 278 | 1.55E-88 |