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TRANSCRIPT CARD

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  1. Clone 'cilv041p17' > 
  2. Transcript 'KH2012:KH.C11.112.v3...' > 
  3. Transcript 'Harore.CG.MTP2014.S7...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S7.g08796.01.t

Possible name(s)

AC011530.1; DMWD; WDR20

Gene model

Harore.CG.MTP2014.S7.g08796

Location

S7 [236,836 / 244,878]

Sequences

Amino acid sequence

Length: 707

>Harore.CG.MTP2014.S7.g08796.01.p
MALDSGRKETDIKSQFTTREGIYKQMPNSEYCRPNRVPHTTQGPPSTSTPVKVSFAEVNA
DDEPHTRIVFTIGRDLFYFNYEGVSQPVDLNKPLDKRTYKGVAPTCHHVNSHTSSSESVR
VAVGFAAGQVQIIDVGTKQSLQILNEERMTEKSPVTCVKWLPQSESILLSSHSNGHMYTY
DSSQDNVNVIPQYHEKPYKMCGSIGIYTLKNKTYPSSTNGQTLGVVLKNPLHKWVVTTDN
SAIHEFEFSHDGKHIAIVSQDGYLRIVEYGTFEPKGFMKSYFGGLLCCCWSPDGRYIVTG
GEDDLITVWSFHGSYVLARGHGHRSWVSNVSFDSYCCNIPSIEEMGNSYGIDFSCIATDG
RRQQPDGGSKSPKDDKKSPGSETRGGSPLIISKISRNCIRDTDRNRGNSLTSRISRVSLA
ADLSDPAKQFFYRFGSVGQDAQLCLWELTEDILFPKRRTATLIEGLAGVHGESDCNALRN
NFGQMNGLYLPHEHSTNNEINMVHATEVADAKGKHSKSSNITNSNSPMKEHSGHRGLHFF
SLSKDFFKSESSTVTSQGPTGEKFSTLGSRDVGQRKEGSKEHKRNLSLPYFGSKNSSHSH
SSVNGMSKSNHHKHNEESKTLGTVLCPRLNETTMLEPLVCKRIAQGRLTCISFQKDSIVT
ACQDGFIQTWARPVTLMPDSRPKSPSNLVANTHMNISSPVNKSGTVV

Nucleotide sequence

Length: 3,798

>Harore.CG.MTP2014.S7.g08796.01.t
CCGGCGGCTCACGTACCCCAGGTGAAATTTCAGAGATAACGCTAAGGAAGTATGAAAGAA
AGGTCTGATGTAAGATGTAAGGAGTCACAAAGCCCTCGATAAACCAATAATTAATCCGAT
TATACACACTATGGCACTTGACAGTGGAAGAAAGGAAACGGACATCAAATCACAGTTTAC
TACTAGAGAAGGAATATACAAACAAATGCCGAACTCGGAATACTGCAGACCTAACCGAGT
ACCTCATACAACGCAGGGTCCTCCGTCGACCTCTACCCCCGTAAAAGTTAGTTTTGCCGA
AGTGAACGCAGACGACGAACCGCATACTCGAATTGTGTTCACGATCGGTCGTGATCTATT
TTACTTCAACTACGAAGGGGTTTCTCAGCCTGTAGATTTGAACAAACCTCTTGACAAACG
AACCTACAAAGGCGTTGCGCCAACATGTCATCATGTGAATAGTCATACATCATCATCAGA
GAGCGTGAGAGTTGCTGTCGGATTTGCTGCTGGTCAGGTTCAGATCATTGATGTTGGCAC
TAAACAGAGTTTGCAGATCTTGAATGAAGAAAGAATGACAGAAAAATCACCAGTGACCTG
TGTCAAATGGTTACCACAGAGCGAGTCTATTTTATTATCTTCACATTCAAATGGACACAT
GTACACTTACGATTCAAGTCAAGACAATGTAAACGTCATACCACAATATCATGAAAAGCC
GTATAAGATGTGTGGATCGATCGGGATCTACACGCTGAAAAACAAAACATATCCTTCGTC
AACCAATGGACAGACTCTTGGAGTTGTCTTGAAAAATCCTCTTCACAAATGGGTTGTCAC
CACTGACAATTCAGCTATTCACGAGTTTGAGTTCTCTCATGACGGGAAGCATATCGCTAT
TGTATCGCAGGATGGATACCTTCGTATTGTTGAATACGGTACATTCGAACCGAAAGGTTT
CATGAAGAGCTACTTCGGCGGCTTGCTGTGTTGCTGCTGGAGTCCAGATGGACGATACAT
AGTGACGGGAGGTGAAGACGACCTGATCACCGTCTGGTCCTTCCATGGCAGTTACGTCCT
TGCCAGAGGTCACGGTCATAGGTCGTGGGTCAGCAACGTTTCATTTGATTCATATTGTTG
CAACATTCCCAGCATTGAGGAAATGGGGAATTCCTATGGGATTGACTTTTCCTGCATTGC
AACAGACGGCAGGAGACAGCAGCCTGATGGAGGATCTAAATCACCCAAGGACGATAAAAA
AAGCCCAGGCAGCGAAACTCGAGGTGGTTCACCATTAATAATTAGCAAAATTTCAAGAAA
TTGTATTCGGGATACGGACCGCAATAGGGGAAACAGCCTTACGTCTAGAATATCTCGTGT
CAGCCTGGCTGCTGATTTGTCTGATCCTGCCAAACAGTTTTTTTATAGGTTTGGGTCAGT
CGGTCAAGACGCACAGCTGTGTCTGTGGGAATTAACAGAAGACATACTGTTCCCCAAACG
AAGAACTGCCACCTTAATCGAAGGCCTCGCCGGTGTTCATGGAGAGAGCGACTGTAACGC
TCTGCGAAATAATTTCGGGCAAATGAACGGTTTGTACTTGCCACACGAACATTCGACAAA
CAACGAAATCAACATGGTTCACGCAACAGAAGTTGCCGATGCCAAAGGAAAACACTCGAA
ATCCAGCAACATTACTAACTCAAACTCCCCTATGAAAGAGCATAGTGGTCACAGAGGTCT
TCATTTTTTTTCCTTGTCGAAAGATTTTTTCAAGAGTGAGAGCAGCACAGTCACTTCACA
AGGACCCACAGGTGAAAAGTTTTCAACATTAGGCAGCAGAGATGTGGGACAACGTAAGGA
AGGTAGCAAAGAACATAAAAGAAATCTCAGCCTACCATACTTCGGTTCAAAAAACTCTAG
TCATTCGCATAGTTCAGTAAATGGAATGAGTAAAAGCAATCACCACAAACACAATGAGGA
GTCCAAAACACTCGGAACAGTATTATGTCCCCGGCTAAACGAAACGACAATGCTTGAACC
ACTGGTATGCAAGAGGATTGCCCAAGGTCGCCTGACTTGTATAAGCTTCCAAAAAGACAG
CATTGTTACAGCATGTCAAGACGGTTTTATTCAAACATGGGCAAGGCCAGTTACGCTTAT
GCCCGACTCCAGACCTAAAAGCCCTTCTAATCTCGTTGCAAATACACACATGAATATCTC
GAGCCCTGTTAATAAAAGCGGAACAGTTGTGTGAAGCATCCAAGTTTTATTCTTCTGTGT
TCATCTGGCAATCAAGTCATGTTTCAAATTGGTGCTTTGCTGTTTTTTAGTTTAAAAGTG
GAACACTGTATAATCTCGCGTGTTCCGCTACGTATTTGTTGTCACACTCGATTGAATAGT
ATTCACACCTAAGATTTGCATTAGTAAACGTATGACTCTCTACCTCCGACAAACTCCTTA
CCGGTAGTGCCACCCGTCATTATTCATTGGTAAATGCTGAAGATATAATGACAATTGTTT
GGGTTATGAAATTTTGTAGAATTATTTTTATGAAACCCATGTATTTGACTCGAACCAGTG
GGAATGGGTTCGATTGAGGTGAAGTTTATTCGTTCAGGTTTGGTTTCAGTTTTTCAATTT
ACTAAAGGATGTCATCCTGTTTTGTTTAAAAACGGTTTGCACATTATTACATCACTAATA
AAGATTTTTTCAATAATGAAGCGAAGATCATACGATCTAGAATTGATAAATAATGATGAT
AACAACACAGTAATAGTCTCCCTTTAATTTACATTCTGAGAAACAACCGATTAGTACATA
TAATCTAGTTTGAGCATTGAAATTCTAAACTGTAACGGAACCCGTTTAGTTTTTTTATTC
GTTCGATTGGGGGTCACATTTTCTGATTCTACGAGTTTAGGTGTTTTTTTAGTTTAAATG
ATCAGTTCAAGTCCCTGCATCGAACAATTAATTTTCTCTCATGATATTGGACTGTGAGCT
GTGACAAAAATACTTTGATTGTCGTCTAGTCCTTTACAGTCCTGATGAAATGCTTTTTTA
CTTTTTAGCTTGTATTGAGAATGCTACTATAATATATCTTTAAATCACTGTTGTTTTTCA
AACATTCAACTTTTCCAATTATTCACAAATCAGTGTGTGTTTGTGAATTTATGATGGCCA
ACGATAATGAAATATCAATACTGTGCTGTGTACAAATGCTGCATAGGAATTCTAGCTAAT
CTAAATTCTCCATGACATTAGAAAAACACAAAGAATTGATTCAAGTATATCATATGAATT
CTAGAACTACAGTATGATGGTACAGAATGCTGTTTAAATCAATTCCACAAAATCAAACTT
TAATTGCAAGCTAGATTCAGTTACAACCACCTTTACCGACATTCCAGGCTTGAAAGAGTT
GTCCATTTGTTTAGGTGGCACTCGTTTGTATGTGCATACTGCAACCGGGCGTATTACATG
AATATGAATCAATTTAATATCACAAATGTCTGGGTGCAATCATACCACTGAACGTAATTG
ATATGATTTGCGCATTTAATTTTCTTTTTTGATTCTTCAAGTTATTGTTGAAATTTTGTC
TTGAACTTTTTCCTTTTCGTTTGACTGTTTATAAATTAACGATTTCTATCGCAATATTAC
TCTATCTTATGGTCCCGATTACATGTGTTGCATTATGCTAATATATGAAAAGTAGGCATG
GTGTGCTAGTAGGTTATCATAATGCTTTTATTTCTGTTTCCAATTAAAATTTTAATAGAT
CAGAACGATTGATGATGC

InterProScan

SUPERFAMILY
WD40_repeat_dom_sf (IPR036322) - T[94-194] 1.34E-31 - T[232-337] 1.34E-31 - T[433-449] 1.34E-31 - T[634-671] 1.34E-31
SMART
WD40_repeat (IPR001680) - T[137-181] 0.73 - T[227-268] 1.3 - T[271-310] 1.1E-5 - T[637-671] 36.0
ProSiteProfiles
WD40_repeat_dom (IPR017986) - T[236-333] 13.158
ProSiteProfiles
WD40_repeat (IPR001680) - T[278-319] 10.542
Gene3D
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[597-676] 1.3E-5

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
WDR20_HUMAN 40.593 % 449 1.31E-150
DMWD_HUMAN 47.794 % 278 1.16E-83