- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S7.g11081.01.t
Possible name(s)
SNX18; SNX33; SNX9
Gene model
Location
S7 [507,484 / 510,421]
Amino acid sequence
Length: 554
>Harore.CG.MTP2014.S7.g11081.01.p
WNMAQIGDKVRILYEFTGIKDNNELLLIDGDIVTLTNPDVGEGWWEGQSSDGSIGLFPSE
YGELLNAEEGKEAPSSTDTCYAVVGEGPSRTKIEATEEFDDDWDDNWPEQATYETQTSVT
SSQSPMTLSVSPVSKTTQKRGGDSPKKGTKSTSSWMGGMNLFSSFSVTPGESYVLGESKV
DPSEKALIRISMTEYGPMWENSPLSFTCAISDPQKASKFSGFKSYITYNITPSHTGKTVS
RRYKHFDWLLEQLSRKYGSSIAVLQLPDKQLMGRYEEDFIEGRMNQLQGWLSRMSLHPVI
CRSEVFQHFLTSKNNEKAWKEGKRKAEHDNTIGGAFYATIEPPQERLEASVTEQNLVQYS
QFTKSLEDILRQTVTHGSEYARKCSGPLMREYQKMGQLFGSLGSTFAMDTQAHSQPLTEA
IKHTGKTYEEIGTLYQNQSKYDWNPLLDGFNEYKRIASAFPNIIANNTSAIEKQREMVKQ
QEEGKYTQDDIDKARKRLETISYSVQAEMNHLQYYRCGDFAAYMKHFLEQQTIFYQTIVH
KLQETAKLYEELQY
Nucleotide sequence
Length: 2,541
>Harore.CG.MTP2014.S7.g11081.01.t
AGTGGAATATGGCACAGATCGGAGATAAGGTGCGTATACTGTACGAGTTTACCGGCATAA
AAGATAACAATGAATTACTTTTAATTGACGGAGATATAGTTACGTTAACGAATCCGGACG
TAGGCGAAGGTTGGTGGGAGGGCCAGTCCTCCGATGGATCTATAGGATTATTTCCTTCCG
AATATGGTGAATTGCTGAATGCTGAAGAAGGTAAAGAGGCACCCAGCTCCACGGATACCT
GCTATGCTGTTGTAGGAGAGGGTCCTTCAAGAACAAAAATCGAAGCAACTGAAGAATTTG
ATGATGACTGGGATGATAATTGGCCAGAACAAGCTACTTATGAGACACAGACATCTGTGA
CATCCAGCCAATCTCCAATGACGCTAAGTGTTAGTCCTGTTAGCAAAACAACACAAAAAA
GGGGCGGGGACTCACCAAAGAAGGGGACCAAGTCTACTTCTAGTTGGATGGGCGGGATGA
ATCTATTTTCTTCGTTCTCTGTCACACCCGGCGAATCATATGTTTTAGGAGAGAGCAAGG
TTGACCCATCGGAAAAAGCGTTGATTCGCATATCGATGACTGAATACGGACCCATGTGGG
AAAACAGCCCGTTGAGTTTTACTTGCGCAATCTCAGACCCACAAAAAGCCAGCAAGTTTT
CAGGCTTTAAAAGCTACATCACATACAACATCACTCCAAGCCATACAGGCAAGACGGTAT
CACGGCGATACAAGCACTTCGACTGGCTCCTGGAACAACTTTCTAGAAAGTATGGATCAT
CAATTGCAGTCTTGCAACTACCAGACAAGCAGCTTATGGGGCGATATGAAGAGGATTTCA
TAGAGGGTCGAATGAATCAGCTACAAGGTTGGCTTTCAAGAATGTCACTTCATCCTGTTA
TATGCCGGTCTGAAGTATTCCAACATTTCTTAACATCAAAGAACAACGAAAAAGCATGGA
AAGAGGGCAAGAGAAAAGCAGAACATGACAACACCATAGGGGGCGCTTTCTACGCAACGA
TAGAACCTCCCCAAGAAAGGCTTGAAGCATCAGTAACCGAGCAAAATCTTGTTCAGTATT
CGCAGTTCACCAAATCTCTAGAAGATATCTTGAGGCAAACTGTGACACATGGATCAGAAT
ATGCTAGAAAATGTAGTGGTCCTCTGATGAGAGAATACCAGAAAATGGGGCAGTTGTTTG
GTTCTTTAGGGTCAACTTTTGCCATGGACACACAGGCACATTCACAACCATTGACTGAGG
CAATCAAACACACTGGCAAAACATATGAGGAAATTGGAACACTTTATCAAAATCAGTCAA
AGTATGACTGGAACCCTCTACTGGATGGATTCAATGAATACAAGAGAATTGCCTCCGCCT
TTCCAAACATCATTGCGAATAACACAAGCGCCATAGAAAAGCAGAGGGAAATGGTGAAGC
AACAAGAAGAGGGAAAGTACACACAAGATGACATAGATAAGGCGAGAAAGCGCTTGGAGA
CTATTTCTTACTCCGTGCAGGCCGAGATGAACCACTTGCAGTATTATAGATGTGGTGATT
TCGCTGCCTACATGAAGCATTTCCTCGAGCAACAGACGATATTCTATCAAACTATAGTTC
ACAAGTTGCAGGAGACAGCTAAACTTTATGAAGAACTCCAATATTGATAGATACAGCAGG
ATCCAATAGCTGATTAATTTGATTCTTCTCTTCCAACCTGTTACTGACGATTGAAATTAT
TATGATGATCAAACTGTTTTATTTTAATCTTGCCAACATGATAATTATTTTTTAAAAACT
TTAATACACTGATGAGCGATCACTCTGGAAAGATCACAATTGACAAATTATTATTTTCAG
ATATTAATAATTATTTTGCGCTAATTCTATCAGGTCAGAATACAGTGTTGCTACAGGTCA
CTTATATTATAGAAATGTTATTGATATTACAATACTTATATATACTTGGCAGATGGTAAT
TTAAGTAATTTTTGTATCAAAACATCATATACAGAGTGGAATTACTGTTGTCTGTTTTTT
TGCTATTGCTTGTCCTTGTAAGCCTTGTCTTCTGTATATTACTTTAAATTTTAATGAGCT
GTCCAGTGTATCAGTTTATATCCAATATTATCCATTTTCATCTTATATATTGATGGTCTT
GATATTTCCATTTCCATGTCATGGAGTATTATCAATCATTGATTTTGCAATATATATATA
TATGTTCTTTTTTATAATATTGGAGTTGTGTTGTGTTGTGTTGTGAACTCATGAAATTAG
TAAATGTCAAATTGTGCAATGAGAGAGCGTTGGTCCTTGATTAATCATCAACCAGTCATG
TTTTACTCTACATAGCTAATATACACCAATAGCATGTATATAAACATCTTATTTAATAGG
AACTCCATCGACTCGTAAGTTGAAATAAGGAGAAAGAGGCAGTCTAAGCAATTGAAGGCT
CTTATTTTTCTGGAACCCAAGTTGAAATTAGAACCTGGCTTTTGAATAAATTTGAAATGG
AGAAATATTGCTTGCTGCTAT
| ProSiteProfiles |
SH3_domain (IPR001452) - T[5-67] 13.368 |
| SUPERFAMILY |
SH3-like_dom_sf (IPR036028) - T[7-68] 4.99E-12 |
| SMART |
SH3_domain (IPR001452) - T[8-66] 4.9E-10 |
| Pfam |
SH3_domain (IPR001452) - T[15-61] 5.2E-6 |
| PANTHER |
SNX9 (IPR028644) - T[88-547] 4.1E-119 |
| Gene3D |
PX_dom_sf (IPR036871) - T[187-320] 3.3E-39 |
| SUPERFAMILY |
PX_dom_sf (IPR036871) - T[202-314] 8.9E-26 |
| SMART |
Phox (IPR001683) - T[202-313] 6.6E-24 |
| ProSiteProfiles |
Phox (IPR001683) - T[206-317] 15.989 |
| Pfam |
Phox (IPR001683) - T[208-312] 7.0E-21 |
| Pfam |
Sorting_nexin_WASP-bd-dom (IPR019497) - T[316-549] 3.3E-70 |
| Gene3D |
AH/BAR_dom_sf (IPR027267) - T[362-552] 4.8E-64 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SNX33_HUMAN | 33.391 % | 321 | 7.79E-103 |
| SNX9_HUMAN | 42.222 % | 329 | 1.01E-105 |
| SNX18_HUMAN | 41.566 % | 262 | 8.54E-80 |