- Transcript 'Boleac.CG.SB_v3.S500...' >
- Transcript 'KH2012:KH.C9.785.v2....' >
- Transcript 'KH2012:KH.C2.282.v2....' >
- Transcript 'KH2012:KH.C12.568.v2...' >
- Transcript 'Harore.CG.MTP2014.S7...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S7.g12857.02.t
Possible name(s)
SRBD1; SUPT6H
Gene model
Location
S7 [610,742 / 620,283]
Amino acid sequence
Length: 1,310
>Harore.CG.MTP2014.S7.g12857.02.p
MRNQQFEMPFIAFYRKEYVEPELNIFDLNNIYHWDEKWTQLLNRKANLTRLLQKMQTYQY
EQISADPDKPLGDNIRALTDADIERIQNVQSMDELKDVYVHFLLHYGRDIPKMQNALRTQ
RQRERSDESNPDGMEAQSSDLKQASRKDMYTVCLNAGLGGVANKFGLTPEQFGENLRDNY
QRHETEQYPAEPSELAQDFLTQQFDTIEKVLEGSRYMVAMQLAKEPLVQQCVRQTFQERA
KLNVKPTKKGMKEIDESHPCFKLKWLKNKPVRDLVGPSFLHLSNAETENLLGISIEIDMK
NEGISASHTYFEEIKQLYYRDEFSHLVQEWNSQRSRVIEFMLNKILYPEMAREVRATLLR
EARDGIVQDCALTLRKFLSVAPYQVEEREDDDDMNRGCTIMAVSYSDNKDSATFATVISG
DGEVVDLLRLPFMRIRLNAPNEDDRNRKEKDLTSIKKFISKKKPHVIVIGAEDRYALMLQ
EDIKACVTELEQEGSISAISVELMDNELAAVYAATKKAEADFREYPTELRQAISLARRMQ
DPMLEFAQLCSQEEDLLCLKFHPLQDQVEKDQLLVRLVEEFVFRACEVGVDVNRAIAHPH
SANIVQFVCGLGQRKAAHLLKVLKQKNGRLENRSNLVTVCKMGPKIFINCAGFIKIDTSS
LGDSTDVYIEVLDGLRVHPETYEWARKMAVDALEYDESAEDANPSSALEEILESPERLKD
LDLDAFADELERQGYGNKGITLYDIRNELDCKYKDYRTMYRSPTVEERFTLITKEPLEQF
QEGKLITCRVTGIAYRRPKAEQLDLAEPHKDELTGTWNCSFCGMGDFGELSEVWSHLDSG
ECLGKAVGVRVRLDNGLSGFIPTDKLSDSKVSNPEERVKINMTVHCRITKIDIEKFQVDL
SSRSSDLRNEKGQWGTMHDTYYDHDAEAAFHQNSNNTDKNKNRTTYIKRVIAHPSFHNIG
YKESEKMLTGMDQGDVIIRPSSKGSDHLTATWKVGEDVCAHIDIKEEGKENSFSLGKSLW
IGNDEFEDLDEIIARFIQPLAANARDLLNHKYYKSTNGGKKDVIEDMLKIAKKSAPSRIP
YIITVCKDLPGKYLLSYMPRTKPKHEYVTVLSDGFRYRAQVFTTVNQLFKWFKEHFRDPI
PSHLLPSHTPAGSTSGGAHFNLNTIQGALQSLQQTPRTPKTGPFATPLPKQGGYRVTPNA
AAIPRTPNYPPRGTPLQTPIQQTPTFTPNQTPLAWGQPPIAPPRTPRNRNVAGTDWGRAA
EEWVRKKVPTKNSPRLTPRGPRTPAGSYKGTPRTPVHHTPRTPNNRGTLA
Nucleotide sequence
Length: 4,299
>Harore.CG.MTP2014.S7.g12857.02.t
ATGTTCAATATCCGAAACATGGTAGATAAATTGGAAGATTATCCTGCAGAGGAGGTGCTA
ATGAACAACATTTGTTTAATATCTACCTTTTATACTTTTGATGAAACACAGAGCCCCCTC
ATTTTCAGAGTTAGTATCATATTGTGTAAGGTGGAAGTGTTAATCCCACGTCATTCACTG
GTATCATCATCATAACCCGCCGATGATGGTGAACTGGAATTGGAAGCGGAATGGATATAC
AAACATTGCTTTGTAGAGACAGCTTTATCCAAGCAGGAAAATTTTGAGCAGGATATTGGA
GCTACATCCACCCTGAACAGGAAGCCACCGTCTGCTATTGCTAAAATTCAGGACTCATTA
AACTTTATGAGAAATCAGCAGTTTGAGATGCCTTTCATCGCCTTCTATAGGAAAGAATAT
GTAGAACCGGAGCTCAATATATTTGACCTCAACAACATATATCACTGGGATGAAAAGTGG
ACACAGCTTCTCAACAGAAAAGCCAATCTCACCCGACTTTTGCAGAAAATGCAGACTTAT
CAGTACGAGCAGATATCAGCTGATCCTGACAAACCTCTCGGCGATAATATCAGGGCTCTC
ACTGATGCCGACATAGAAAGAATACAAAACGTTCAGTCCATGGATGAGTTGAAGGATGTC
TATGTGCATTTCCTATTGCATTATGGCAGAGATATCCCTAAGATGCAGAATGCTCTCCGA
ACTCAGCGTCAGAGAGAAAGAAGCGACGAGAGTAATCCCGATGGTATGGAGGCACAGTCT
TCAGATCTTAAACAGGCTTCCAGGAAGGATATGTATACAGTGTGTTTGAATGCTGGTTTG
GGTGGAGTTGCTAACAAGTTCGGCCTGACTCCAGAACAGTTTGGTGAAAACCTCCGAGAT
AATTACCAACGTCACGAAACTGAACAGTATCCGGCTGAACCCTCCGAGCTTGCTCAAGAT
TTCTTAACTCAGCAGTTTGACACAATTGAAAAAGTTCTAGAAGGATCGAGATACATGGTC
GCGATGCAACTCGCGAAAGAACCGCTCGTCCAGCAGTGTGTTCGTCAGACCTTTCAGGAA
CGAGCCAAGCTCAACGTGAAACCGACAAAAAAAGGAATGAAAGAAATTGATGAATCTCAT
CCCTGTTTCAAATTAAAGTGGCTTAAAAACAAACCAGTGCGTGATTTGGTCGGCCCTAGC
TTCTTGCATCTCTCAAATGCCGAGACGGAAAACTTGCTCGGAATCTCCATTGAAATAGAT
ATGAAGAATGAAGGAATTTCTGCAAGCCATACCTATTTTGAAGAAATTAAACAACTCTAC
TATAGGGATGAATTCAGTCATCTTGTGCAAGAATGGAATTCGCAGAGGAGTCGAGTGATT
GAATTCATGCTGAATAAAATCCTTTACCCAGAAATGGCCAGAGAAGTACGGGCGACCTTG
CTTCGAGAAGCCAGAGATGGAATTGTTCAAGACTGTGCACTCACTCTTCGAAAATTTTTG
TCCGTTGCTCCTTATCAGGTCGAAGAAAGAGAGGATGATGATGACATGAACAGGGGTTGC
ACTATAATGGCAGTTAGTTATAGCGATAATAAAGATTCTGCTACGTTTGCGACCGTTATT
TCTGGAGACGGGGAAGTAGTCGACTTGCTGCGACTGCCGTTTATGAGAATCCGCCTCAAC
GCTCCTAATGAGGACGACAGAAATAGAAAAGAAAAAGATTTGACAAGCATCAAAAAGTTT
ATATCCAAGAAGAAGCCACACGTCATCGTGATAGGTGCCGAAGACAGGTATGCACTAATG
TTACAAGAAGATATCAAGGCTTGCGTTACCGAACTCGAGCAGGAAGGAAGCATATCTGCG
ATCAGTGTAGAGCTTATGGACAATGAGTTAGCGGCAGTGTATGCTGCAACAAAAAAAGCT
GAGGCTGATTTTCGAGAATATCCTACTGAATTGAGGCAAGCAATATCTTTGGCAAGAAGA
ATGCAGGATCCTATGTTGGAATTTGCACAGCTTTGTTCTCAAGAGGAGGATTTGCTTTGT
CTGAAGTTCCATCCTTTGCAGGACCAAGTTGAAAAGGACCAGTTGCTGGTTCGACTGGTC
GAGGAATTTGTATTTCGTGCATGCGAAGTTGGAGTGGATGTCAATCGGGCAATCGCACAT
CCGCACTCTGCTAATATAGTGCAATTTGTGTGTGGACTCGGGCAAAGGAAGGCTGCACAT
TTGTTAAAAGTTTTAAAGCAGAAGAATGGGAGACTGGAAAATCGCTCTAACTTGGTAACT
GTGTGCAAAATGGGACCAAAAATATTCATCAACTGTGCCGGATTTATTAAAATAGACACA
AGTTCTTTGGGTGACAGCACCGACGTTTACATCGAAGTTTTGGACGGGCTCCGCGTTCAT
CCCGAAACCTACGAGTGGGCGCGGAAGATGGCTGTCGATGCCCTGGAGTATGACGAATCG
GCCGAAGATGCGAATCCATCTTCCGCTCTTGAAGAAATCCTCGAATCTCCAGAACGTTTG
AAGGATCTTGACCTGGATGCTTTTGCTGATGAACTGGAAAGACAAGGTTATGGAAACAAA
GGAATCACACTCTATGATATTCGTAACGAGCTCGATTGCAAGTACAAAGATTATCGTACC
ATGTATAGGTCACCGACTGTAGAAGAACGTTTTACCTTGATTACAAAGGAACCTTTGGAA
CAGTTTCAAGAAGGTAAACTAATCACATGTAGAGTGACGGGAATTGCCTACCGACGTCCT
AAAGCCGAACAGCTGGATCTAGCCGAACCTCATAAAGATGAATTGACTGGAACGTGGAAC
TGTTCCTTCTGTGGTATGGGAGATTTTGGGGAACTCAGCGAAGTTTGGTCCCATCTGGAT
AGTGGAGAATGCCTGGGGAAAGCGGTTGGGGTCAGAGTAAGACTAGACAATGGTCTCAGT
GGTTTTATTCCAACGGATAAACTGAGCGATTCAAAAGTTTCGAATCCAGAAGAAAGAGTC
AAGATCAATATGACAGTGCATTGCAGAATCACTAAAATTGATATAGAGAAATTCCAAGTC
GATCTAAGTTCCCGTAGCTCAGACCTGCGGAACGAGAAAGGGCAGTGGGGCACGATGCAT
GACACGTATTACGATCATGACGCGGAAGCGGCTTTTCACCAGAATTCAAACAATACTGAT
AAAAATAAAAATAGAACAACATACATCAAAAGAGTCATAGCTCATCCTTCATTCCACAAC
ATCGGTTACAAGGAGTCTGAAAAGATGCTCACTGGGATGGACCAAGGGGATGTAATCATC
CGTCCGAGCAGTAAAGGATCCGACCACCTGACTGCTACTTGGAAAGTAGGTGAAGATGTC
TGTGCACATATTGACATTAAAGAAGAGGGCAAGGAAAATTCTTTCAGTCTTGGAAAAAGT
TTATGGATCGGAAACGATGAATTTGAAGATTTGGATGAAATAATTGCACGTTTTATACAA
CCGTTGGCGGCCAACGCTCGAGATTTGCTTAATCATAAATATTACAAGTCTACTAACGGC
GGGAAGAAAGATGTCATTGAAGACATGTTGAAAATTGCAAAGAAATCTGCACCATCTAGA
ATTCCATATATAATTACTGTTTGTAAAGACCTACCAGGAAAATATCTACTATCCTATATG
CCTCGAACAAAGCCTAAACACGAATATGTAACCGTTCTGTCTGATGGATTCCGGTACAGA
GCGCAAGTGTTCACAACTGTGAATCAGTTGTTCAAATGGTTTAAGGAACATTTTCGAGAC
CCCATTCCAAGCCATTTGCTTCCCTCCCATACACCAGCTGGGTCCACTTCTGGTGGCGCT
CATTTCAACCTTAACACAATCCAAGGGGCACTACAGTCTCTGCAACAAACGCCAAGAACT
CCTAAGACTGGTCCATTTGCAACTCCTCTCCCCAAGCAAGGTGGCTACCGGGTGACACCA
AATGCAGCCGCAATTCCAAGGACACCTAACTATCCACCTCGGGGCACACCTCTGCAAACC
CCTATACAGCAAACTCCTACTTTCACTCCTAATCAGACGCCGTTGGCATGGGGTCAACCA
CCCATCGCTCCTCCCAGGACACCAAGAAACCGAAATGTTGCTGGAACAGACTGGGGTAGA
GCTGCGGAAGAATGGGTTCGAAAGAAAGTCCCAACAAAGAACAGTCCTAGACTCACACCG
AGAGGTCCGAGGACTCCGGCTGGAAGTTATAAAGGCACCCCACGAACGCCGGTTCATCAT
ACCCCACGTACTCCTAATAATCGTGGAACGTTAGCTTAG
| Pfam |
Spt6_HTH_DNA-bd_dom (IPR028088) - T[1-57] 9.2E-12 |
| PANTHER |
TF_Spt6 (IPR017072) - T[1-1141] 0.0 |
| PIRSF |
TF_Spt6 (IPR017072) - T[1-1183] 0.0 |
| SUPERFAMILY |
RNaseH-like_sf (IPR012337) - T[397-553] 1.74E-21 |
| Pfam |
Spt6_YqgF (IPR028231) - T[397-550] 1.2E-41 |
| SMART |
YqgF/RNaseH-like_dom (IPR006641) - T[398-513] 0.0018 |
| Pfam |
Spt6_HHH (IPR032706) - T[554-657] 1.1E-39 |
| SUPERFAMILY |
RuvA_2-like (IPR010994) - T[565-658] 1.56E-10 - T[671-757] 8.23E-5 |
| Pfam |
Spt6_dom (IPR027999) - T[670-775] 5.3E-32 |
| ProSiteProfiles |
S1_domain (IPR003029) - T[823-903] 13.969 |
| SMART |
S1_dom (IPR022967) - T[832-903] 1.8E-4 |
| SUPERFAMILY |
NA-bd_OB-fold (IPR012340) - T[847-905] 2.73E-9 |
| Pfam |
S1_domain (IPR003029) - T[847-901] 2.6E-8 |
| Pfam |
Spt6_SH2 (IPR035420) - T[921-1135] 4.5E-80 |
| Gene3D |
SH2_dom_sf (IPR036860) - T[939-1044] 1.4E-40 |
| SUPERFAMILY |
SH2_dom_sf (IPR036860) - T[945-1038] 5.86E-10 |
| CDD |
Spt6_SH2_N (IPR035019) - T[952-1036] 1.00494E-43 |
| SMART |
SH2 (IPR000980) - T[953-1042] 3.5E-5 |
| CDD |
Spt6_SH2_C (IPR035018) - T[1045-1136] 2.01927E-34 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| SPT6H_HUMAN | 56.366 % | 1521 | 0 |