- Clone 'ciad065m19' >
- Transcript 'Harore.CG.MTP2014.S9...' >
- Transcript 'Phfumi.CG.MTP2014.S3...' >
- Transcript 'Harore.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S80.g01333.01.t
Possible name(s)
COPA; COPB2; WDR5
Gene model
Location
S80 [265,142 / 274,396]
Amino acid sequence
Length: 1,272
>Harore.CG.MTP2014.S80.g01333.01.p
MLWFKMWIYFLLCFLNCVRMLTKFETKSARVKGLSFHPKRPWVLASLHSGIIQLWDYRMC
TLIDKFEEHDGPVRGVCFHNQQPLFVSGGDDYKIKVWNYKLRRCLFTLLGHLDYIRTTIF
HHEYPWILSASDDQTIRIWNWQSRNCVAVLTGHNHYVMSANFHPKEDLVVSASLDQTIRV
WDIAGLRKKNLSAGSEDSMNRPGSGVPGSIELFSTTDVVVKHVLEGHDRGVNWACFHPSM
PLVVSAADDRLVKLWRMNESKAWEVDSCRGHYNNVSCCAFHPKLELILSTSEDKSIRVWD
MSKRTGVQSFRRDQDRFWILACHPTLNLFAAGHDSGMVIFKLDRERPAHATHENMLYYVK
DKYLRGLNFNTSKDSPVMQLRGSAKSSVFAMSYNPAENAVLITSRASNIENSTYDLYQIP
KTTDSSNPDAPEGKRSSGLSAVWVARNRFAVLDRTHTIVIKNLKNEITKKIQVPGIDEIF
HAGSGSLLLRTSDGMNLYDVQQKRSLASVKIAKVKYVIWSADMTHVALMAKHNIVICNRK
LQSLATIHENVRVKSGAWEESGVFIYTTSNHIKYALLNGDHGIIRTLDLPIYVTRVRGTN
VFCLDRETRPRVLGIDPTEYRFKQALVNRKYDEVLNMVRNAKLVGQSIIAYLQQKGYPEV
ALHFVKDEKTRFTLAIECGDIEVALAAAKALDDKQCWEALGEMALAQGNHQVVEMSYQRT
KNFDKLSFLYLITGNLEKLKKMMKIAEIRKDTSGHYQAALYLGDVSERVKILRTCGQTSL
AYLTAATHSLKEEATKLEENFDEDQPVPSIPEDATLFQPPPPIMQCEENWPLLTVSKGFF
EGSMASKGKTGALIADMDDDVDAAGWGDDDIILDEDGAIVEGLGDGLGEDGEEGAGEGGG
WDVDDDDLELPADLELPDIPISEGGEGYFVPPTKGTAQTQVWCNNSQLPVDHILAGSFDT
AFRLMHDQVGVVNFEPYKTLFMRTYARSRTAYIGMPSLPAVFSYPHRNWREAGAKAGLPL
VGTKLSDLASWLQDAYKLTTAGKFEEAIHKFRYILLSVPLLAVDNKQEISEAQQLITICR
EYILGLSMEQSRKDLPKNSLDEQKRNCELAAYLTHCQWQPVHLMLALRTAQNLFFKLKNY
KHAAGFARRLLELGPKPNVAAQTRKIIAACDKNPKDAHELKYDAHNPFDICGATYVPLYR
GKPVEKCPLSGTCYAPSVKGETCRITFSVDDADILLVELVKEKHSIYSCVSCGNKSMVSF
MNITIKFKFCLP
Nucleotide sequence
Length: 4,233
>Harore.CG.MTP2014.S80.g01333.01.t
ATGCTTTGGTTCAAAATGTGGATATATTTTCTGTTATGTTTTCTAAACTGTGTCAGGATG
CTGACAAAATTTGAGACCAAGTCAGCAAGGGTCAAAGGATTGTCATTTCATCCTAAACGG
CCATGGGTACTTGCGTCACTGCATAGTGGAATAATTCAACTATGGGACTATCGTATGTGC
ACGCTGATCGATAAGTTTGAAGAACATGATGGACCTGTACGTGGAGTATGTTTCCACAAC
CAGCAGCCGCTCTTCGTGTCTGGAGGAGATGACTATAAAATAAAGGTTTGGAACTATAAG
CTTCGTAGATGTCTGTTCACTCTCCTTGGGCATTTGGATTACATACGTACAACTATTTTT
CACCATGAATATCCCTGGATTCTCAGTGCTTCTGATGACCAAACCATCAGAATATGGAAT
TGGCAATCTCGTAATTGCGTTGCTGTCCTGACAGGCCACAATCATTATGTGATGTCAGCT
AACTTTCATCCAAAAGAAGATCTTGTTGTTTCCGCTTCTCTTGATCAGACGATCCGTGTC
TGGGACATTGCCGGCCTACGAAAAAAGAACCTTTCGGCCGGGTCCGAAGACTCCATGAAT
AGACCTGGATCTGGCGTTCCCGGGTCCATTGAACTTTTTAGCACGACCGACGTGGTAGTT
AAGCATGTTTTGGAGGGACACGACCGTGGGGTTAACTGGGCCTGTTTCCACCCATCCATG
CCCCTGGTAGTGTCAGCAGCTGATGATAGATTAGTTAAGCTGTGGAGAATGAATGAGTCC
AAAGCTTGGGAGGTTGACTCTTGTCGTGGTCATTACAACAACGTTTCATGCTGTGCATTC
CATCCAAAGTTGGAACTCATCCTGAGCACATCTGAGGACAAATCTATTCGTGTCTGGGAC
ATGAGCAAAAGGACCGGGGTTCAGTCATTCAGACGTGATCAGGACAGATTTTGGATTCTT
GCTTGTCACCCCACTCTGAATCTGTTTGCGGCTGGACATGACAGTGGTATGGTCATATTC
AAACTGGACAGAGAACGTCCAGCTCACGCCACCCACGAGAACATGTTGTACTATGTAAAG
GACAAGTATCTTCGTGGTCTCAATTTCAACACAAGCAAAGATTCCCCAGTCATGCAACTG
AGAGGAAGCGCTAAGTCAAGTGTATTTGCAATGTCATACAATCCAGCTGAAAATGCAGTG
CTCATTACTTCCAGAGCTTCCAACATCGAGAACTCAACCTACGACCTTTACCAGATTCCG
AAAACCACAGATTCTTCTAATCCTGATGCTCCCGAAGGCAAAAGATCATCAGGTCTTAGT
GCAGTCTGGGTCGCACGGAATCGCTTTGCTGTTTTGGATCGCACGCATACGATCGTCATC
AAAAATCTAAAGAACGAGATAACTAAAAAGATTCAAGTGCCTGGTATAGATGAAATATTT
CATGCCGGATCTGGCTCACTGTTGCTTCGCACCTCTGATGGAATGAATCTGTACGACGTT
CAACAAAAAAGATCTCTTGCTTCAGTGAAAATTGCCAAAGTCAAGTATGTTATTTGGTCC
GCTGACATGACCCATGTTGCACTGATGGCAAAGCACAACATTGTGATCTGCAACAGAAAA
CTCCAGTCGCTCGCAACCATACACGAAAATGTCAGAGTAAAGTCTGGTGCTTGGGAAGAG
AGTGGTGTTTTCATATATACAACATCGAATCATATTAAATATGCTTTGCTCAATGGCGAC
CATGGGATCATTCGCACCCTCGATTTGCCGATCTATGTTACCCGCGTTCGGGGTACAAAT
GTTTTCTGCTTGGATAGAGAAACAAGACCTCGAGTGTTGGGGATTGATCCGACAGAATAT
AGATTTAAGCAAGCTTTGGTTAACAGAAAATATGATGAAGTTTTGAACATGGTGAGGAAT
GCCAAACTGGTCGGACAATCTATCATTGCGTACTTGCAACAGAAAGGATATCCTGAAGTA
GCACTGCACTTCGTAAAGGATGAAAAAACACGCTTTACACTGGCAATTGAATGTGGTGAT
ATAGAGGTGGCGCTAGCAGCAGCCAAAGCTCTCGATGACAAGCAGTGCTGGGAAGCTTTA
GGTGAAATGGCACTTGCTCAGGGCAACCACCAAGTGGTAGAAATGTCTTACCAGCGAACC
AAAAACTTTGACAAGCTGTCATTCCTTTATCTCATAACTGGAAACTTGGAAAAATTGAAG
AAAATGATGAAAATCGCTGAGATCCGCAAGGATACATCCGGCCATTATCAGGCAGCATTG
TACCTTGGCGACGTGTCTGAAAGAGTGAAAATACTGCGCACTTGTGGTCAGACTTCTCTC
GCGTATTTAACAGCAGCAACTCACTCACTCAAGGAGGAAGCTACTAAACTGGAAGAGAAT
TTTGATGAGGACCAACCAGTCCCATCCATTCCTGAAGATGCGACTTTGTTTCAACCACCA
CCTCCTATCATGCAATGTGAGGAAAATTGGCCCCTACTTACTGTAAGCAAAGGGTTCTTT
GAAGGATCAATGGCGAGCAAAGGCAAAACAGGAGCTCTTATTGCTGATATGGATGATGAT
GTTGATGCTGCAGGATGGGGGGATGATGATATAATACTGGATGAGGATGGTGCTATTGTA
GAAGGACTTGGTGACGGATTAGGGGAGGATGGTGAAGAAGGTGCCGGAGAAGGAGGTGGA
TGGGATGTTGATGATGATGACCTTGAATTGCCAGCTGACCTTGAACTTCCAGACATTCCC
ATATCAGAGGGTGGAGAAGGATACTTTGTTCCTCCAACTAAAGGGACAGCTCAAACCCAA
GTATGGTGCAATAATTCTCAGCTCCCAGTGGACCATATACTGGCTGGTTCATTTGATACT
GCATTCAGGCTCATGCACGACCAAGTTGGAGTCGTAAACTTTGAACCCTACAAAACCCTG
TTCATGCGTACTTACGCTCGATCAAGGACAGCTTACATCGGGATGCCATCCCTACCGGCC
GTCTTCAGTTACCCGCACAGAAATTGGAGGGAAGCCGGGGCAAAAGCAGGCCTTCCATTA
GTTGGCACGAAGCTCTCTGATCTTGCTAGCTGGTTGCAAGATGCATACAAGCTTACAACA
GCAGGAAAATTTGAGGAAGCCATTCACAAATTCAGATACATTCTACTATCAGTTCCCTTA
CTTGCTGTTGACAATAAGCAAGAAATCAGCGAGGCACAGCAACTGATCACAATTTGTCGT
GAATACATTCTTGGACTTTCGATGGAACAGTCGAGGAAAGACCTTCCAAAAAATAGTCTC
GATGAACAGAAGAGGAATTGTGAATTGGCTGCTTATCTCACTCACTGTCAATGGCAACCG
GTTCATTTAATGTTGGCATTGAGAACAGCTCAGAATTTGTTCTTCAAGCTAAAGAATTAC
AAGCACGCTGCAGGATTTGCAAGACGACTCTTAGAGTTAGGACCAAAGCCGAATGTTGCT
GCTCAGACTCGTAAAATTATTGCTGCTTGCGATAAGAATCCTAAGGATGCACATGAACTG
AAATACGATGCTCACAATCCATTTGATATATGTGGAGCTACATATGTACCTCTATACAGG
GGAAAACCGGTAGAAAAATGCCCCCTAAGTGGAACATGTTACGCTCCATCTGTTAAAGGA
GAGACATGTCGAATTACTTTTTCCGTTGATGATGCTGACATTTTACTTGTGGAATTAGTG
AAAGAAAAACACTCTATCTACTCTTGTGTATCTTGTGGGAATAAGTCAATGGTTTCCTTC
ATGAATATAACTATTAAATTTAAATTTTGCTTACCGTAGTCAGTATAGGAATAGATCACA
AGACAGCCTTAAGAAAGAATGAAGTGGCAATTTGGCAAAATAGTATATGGTTGGCAAGTC
GAAATCCTTAACTGTTTGGTATACATATGAAAGATACATACTAATAAGCATATAATGGTG
TTTGTTCTTGAATTATAATGCATATTTGCAGTTATTATCCTTACTGAAATTTTATCTGCC
CTATGTGTATGTGCCCACTTGAATCAGTTATTATAATGCCATGAAAAAATTGTGCTCATT
CTCAAATGGCCACCAAGTGAATTTGATAAGGATTGATGATAGCGTCATCAAGTATCATTA
TCATCGATGTTATCTAGTATGATTGCTATTGGTTACTTAGTTGTATTTAATGAAAAATGT
GCAGAGAATAAAATATCTATCAATATATGTAGA
| SMART |
WD40_repeat (IPR001680) - T[17-56] 2.7 - T[59-98] 4.3E-7 - T[101-140] 3.1E-6 - T[143-182] 4.1E-10 - T[217-256] 4.5E-6 - T[261-300] 7.3E-8 - T[303-341] 80.0 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[18-343] 1.7E-125 |
| PIRSF |
Coatomer_asu (IPR016391) - T[18-1230] 0.0 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[21-187] 2.88E-71 - T[220-339] 2.88E-71 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[24-350] 47.457 |
| Pfam |
WD40_repeat (IPR001680) - T[63-98] 2.2E-5 - T[103-140] 1.2E-6 - T[145-182] 9.2E-7 - T[222-255] 0.001 - T[265-300] 1.3E-6 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[66-107] 12.514 - T[108-149] 12.113 - T[150-183] 15.421 - T[224-265] 12.012 - T[268-309] 14.452 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[127-141] 6.0E-7 - T[169-183] 6.0E-7 - T[287-301] 6.0E-7 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[169-183] . - T[287-301] . |
| Pfam |
Coatomer_WD-assoc_reg (IPR006692) - T[373-789] 2.5E-139 |
| Pfam |
Coatomer_asu_C (IPR010714) - T[837-1226] 5.2E-165 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| COPA_HUMAN | 75.865 % | 1945 | 0 |
| COPB2_HUMAN | 26.485 % | 270 | 1.15E-75 |
| WDR5_HUMAN | 28.425 % | 115 | 8.91E-28 |