- EST 'BW407693' >
- Clone 'cilv032b14' >
- Transcript 'Cisavi.CG.ENS81.R58....' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'Harore.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S823.g04143.01.t
Possible name(s)
GPSM1; TTC28
Gene model
Location
S823 [12,859 / 17,933]
Amino acid sequence
Length: 994
>Harore.CG.MTP2014.S823.g04143.01.p
MFFNKAEDHAASHESEDEKLPLLPTYQMEDGEESTNHSTTEEKEEVTIIEKRKESKMPEE
KKAGIPFNKSGKEADDHPARQESKDRELPLLHRQDEETPPHSMATTGFYSTENTQGIQNE
DNLLTLISLKDEVKSFIEIGEYAQAGKALHQLLRRQRDPWSRFETLQQILECQMMCNQPC
DDEMRELISLCTSSLPLSSLDVRVVGEKQSEEQNFVKACTLLTCASKMFQHDSTPNDAVQ
NIREITQLIKNLIEAMASNPRFRIIAQNYIISYLRDMIKQVQDIEGVPDYFKAENEALCY
NSAASSHEEVGQYDEAVDLFNQAILLMENAYGENVIINRVYGSLFHNLGNVKVDQNKFDE
AVNCYQRAVDVCRTSENYATEAKKQKSLETSLSSLRSTSKLSHSTGLPSRNFHGKNEEKA
EQQMRDGKFLPASNTLQQLAELQKQPKEKLETFQQLAECNVRSNRPLDSEVTKIVSISKS
LGISSSGMKSRADSSYKSNLFRAYIMYVCAGKTYRTDAKPIDAILGIKDCVWWMRKIINK
IVENDMKGIVKTNIIPSMKELLEELRGVDSVPSDMKKAYEAAVLNDIGVSYNSVGEFDKA
IYAYNDGVEFMEHKFREKASRYKVYGGLLSNLGYTYSCTGEKAEAVSYYERAIEAKEKAE
DFASESEKKENIENTRKKIQLILPSDDNPSQKSKPKERPSTPWKSDGSQQDMGMKDMKKL
KDEVKSFIEIGEYTQASETLQQLLGCQRDPWTKFETLQELIECKLMCNETCDDEMNDLIS
ICQHLPLSSHDIRAAADKHVIEDKYIKAYIMITCASKLYKHDTPPSQAVQDIREGTQLMK
HLIEEMAKQSRLRSIATICLIPSLHEMIKEVQDINNVPSRVKALNEALCYNSTATCHEEV
GQFDEAVELFYLGIKLMETEFENDVERTRVYGALFHNLGNTRYKQRKFAEAVDCYERSLK
VAHTAEDFPNEEHRHSDIDGTTKSLQSARELAHM
Nucleotide sequence
Length: 2,985
>Harore.CG.MTP2014.S823.g04143.01.t
ATGTTTTTTAACAAAGCAGAAGATCATGCAGCAAGCCATGAGTCAGAAGATGAAAAGCTA
CCATTACTACCAACATACCAGATGGAGGATGGTGAAGAATCTACTAATCACTCGACCACT
GAGGAAAAAGAAGAAGTGACAATTATAGAAAAAAGAAAGGAGAGTAAAATGCCAGAAGAG
AAAAAGGCAGGAATTCCTTTCAACAAAAGTGGAAAGGAAGCAGATGATCATCCGGCAAGA
CAGGAATCGAAAGACAGAGAGCTCCCTTTACTTCACCGGCAGGATGAAGAAACACCACCA
CACTCCATGGCAACTACAGGGTTTTACTCAACAGAAAACACCCAGGGAATTCAGAATGAA
GACAATTTACTGACATTGATTTCACTCAAAGATGAGGTCAAAAGTTTCATTGAAATCGGT
GAATACGCACAAGCAGGTAAAGCCCTACATCAACTTCTGAGACGTCAGCGAGATCCATGG
TCAAGATTCGAAACATTGCAACAAATTTTGGAATGCCAGATGATGTGCAATCAACCATGC
GATGATGAAATGAGAGAACTCATATCGCTATGTACGTCCTCGCTCCCACTTTCCTCTCTC
GATGTTAGAGTAGTTGGAGAAAAGCAGTCAGAAGAGCAAAACTTCGTCAAAGCTTGCACC
TTGCTCACATGTGCTAGTAAAATGTTTCAACATGATTCTACACCAAACGACGCAGTTCAA
AATATCAGAGAGATAACACAGCTGATTAAAAATCTCATAGAAGCAATGGCAAGTAATCCA
CGGTTTCGAATCATCGCCCAAAACTACATCATCTCGTACTTACGTGATATGATCAAGCAG
GTGCAAGACATAGAAGGCGTGCCAGATTATTTCAAGGCAGAGAACGAGGCTCTATGCTAT
AACAGTGCGGCTTCAAGTCATGAAGAAGTAGGTCAGTATGATGAAGCTGTCGACCTTTTC
AATCAAGCGATACTACTCATGGAAAACGCATATGGGGAAAATGTTATCATAAATCGTGTC
TATGGTTCACTATTCCACAACCTAGGCAATGTAAAAGTTGACCAAAACAAATTCGATGAA
GCTGTGAACTGCTATCAACGGGCTGTAGATGTTTGCCGTACCTCTGAGAATTATGCAACA
GAAGCGAAGAAACAGAAGAGTCTAGAAACATCGTTGAGTAGCCTTCGATCAACTAGTAAA
CTCTCACACTCGACGGGACTACCGTCGCGGAACTTCCATGGGAAGAATGAAGAAAAAGCT
GAGCAACAAATGAGAGATGGCAAGTTTTTACCGGCATCCAACACTTTACAGCAACTTGCT
GAGCTACAAAAACAACCCAAAGAGAAATTGGAAACATTTCAACAACTCGCAGAATGCAAT
GTGAGGTCAAACCGGCCTCTTGACAGCGAAGTAACAAAAATAGTTTCAATTTCAAAATCG
CTTGGAATTTCTTCGAGTGGCATGAAATCACGAGCCGATAGTAGCTACAAGTCAAATTTA
TTCCGCGCTTACATCATGTACGTCTGCGCGGGTAAAACATATAGGACAGACGCGAAACCA
ATAGATGCAATTCTGGGAATAAAGGACTGTGTGTGGTGGATGAGGAAAATTATCAACAAA
ATTGTAGAGAATGACATGAAGGGTATCGTCAAAACAAACATCATACCATCAATGAAGGAA
CTACTAGAAGAGCTACGTGGTGTTGATTCCGTACCTAGCGACATGAAAAAAGCATATGAA
GCGGCTGTTTTAAACGACATCGGTGTTAGTTACAATTCGGTCGGGGAGTTTGATAAAGCC
ATCTATGCCTATAACGATGGTGTCGAATTTATGGAGCATAAATTCAGGGAAAAAGCTTCC
AGGTATAAAGTGTATGGTGGGCTATTGAGTAATTTGGGGTACACATACAGCTGCACTGGT
GAAAAAGCAGAAGCGGTGTCATATTATGAACGGGCAATAGAAGCGAAAGAAAAGGCAGAG
GATTTTGCAAGCGAAAGTGAAAAAAAGGAAAACATTGAAAATACCAGGAAAAAAATTCAA
CTGATACTTCCATCTGATGATAATCCATCACAGAAGTCAAAACCCAAAGAACGTCCATCT
ACTCCATGGAAGTCGGATGGAAGTCAGCAAGACATGGGTATGAAGGATATGAAAAAACTC
AAAGATGAGGTCAAAAGTTTCATTGAAATCGGTGAATACACACAAGCCAGTGAAACCCTG
CAACAACTTCTAGGATGTCAGAGAGATCCGTGGACAAAATTCGAAACTCTGCAAGAGTTA
ATCGAATGCAAATTGATGTGCAATGAAACATGCGATGATGAAATGAACGACCTCATTTCA
ATATGTCAGCACCTTCCGCTTTCGTCACATGACATAAGAGCAGCAGCAGATAAACATGTT
ATTGAAGATAAGTACATCAAGGCATACATCATGATCACATGTGCCAGTAAATTGTACAAA
CACGATACACCACCAAGTCAAGCAGTGCAAGACATAAGAGAAGGAACACAGCTAATGAAA
CACCTGATTGAAGAAATGGCAAAACAAAGCAGGTTAAGAAGCATTGCAACGATATGCTTA
ATTCCATCCTTACATGAAATGATAAAGGAGGTTCAAGATATAAACAATGTGCCAAGTCGA
GTTAAGGCATTGAACGAGGCTTTATGCTATAACAGCACCGCCACATGCCATGAAGAAGTC
GGCCAATTCGATGAAGCTGTTGAACTCTTCTACCTAGGGATTAAACTCATGGAAACAGAA
TTCGAAAATGATGTGGAGAGAACTCGAGTTTATGGCGCACTATTCCATAACTTGGGCAAC
ACAAGATATAAGCAACGAAAATTTGCAGAAGCTGTGGACTGCTATGAACGAAGTTTAAAA
GTGGCACATACTGCTGAAGATTTTCCAAATGAGGAGCACAGACACAGCGACATCGATGGA
ACAACAAAGAGCCTACAGTCTGCCCGTGAACTTGCTCACATGTGA
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[267-465] 1.9E-14 - T[573-764] 1.4E-13 - T[836-991] 1.8E-11 |
| SMART |
TPR_repeat (IPR019734) - T[297-330] 0.15 - T[342-375] 0.0017 - T[581-614] 9.8 - T[626-659] 0.035 - T[887-920] 7.5 - T[932-965] 0.0043 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[297-330] 8.732 - T[342-375] 9.204 - T[581-614] 8.555 - T[626-659] 8.85 - T[887-920] 7.021 - T[932-965] 8.172 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[297-375] 12.158 - T[581-659] 11.45 - T[887-965] 9.395 |
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[297-377] 3.44E-17 - T[628-659] 3.44E-17 - T[887-961] 3.44E-17 |
| Pfam |
TPR_repeat (IPR019734) - T[935-962] 2.6E-4 |
| Protein Name | Identity | Bit Score | e-value |
|---|