- Transcript 'KH2012:KH.C4.686.v1....' >
- Transcript 'Phmamm.CG.MTP2014.S9...' >
- Transcript 'Harore.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S83.g06119.01.t
Possible name(s)
FMR1; FXR1; FXR2
Gene model
Location
S83 [44,184 / 47,674]
Amino acid sequence
Length: 591
>Harore.CG.MTP2014.S83.g06119.01.p
MDERTLEVRGSNGAYYKAFLCDIQPTGVLVTFENNWQPERVIPFQEVRLASCGNPKTDEF
IEGQEVEVHTRANDNEPCGWWHSRIKMSKGEFFVIEYQCDTKYTEIVTKDRLRHMNKNLP
LSPDKMKKISLDVPPDLQDFCTKYIDAHKEFERSTGAVMVKYSTTQKKLDVIVTSVSAHR
RVTIVADLHFRGLRTKLGMLQRVEEASKHLEMSQQRAESCVERFSVQEDLVGLAIGTGGA
NIMTARKIPGVVDIVLDEATHTFSIYGETKEAVSQARDILEFCEDEVIVPRAYVGKVIGK
KGATIQEMIDKSGVLRVRVVGDEENTDKKNEPGLVPFRFVGTRESIRNAKALLDYHVAYL
RDLDQLRMEQLSINQRIKQLDGNFSASQLSMGGLPPQAESDTDGNYRRRRYGPSKGGRYR
KRGGDGDGTTTNSEMSNISDTGSETSDTLSENKSVAVPLPQRRYSKENQHHAVNGSGDGN
KNVKGKNEATNNNSNRNRFEALNGVKDDSGEDVIQNGTEKEVNGVKNDSVNNSNGKSIVP
PAGAKSKSKKKNRNKNKKSKAAEIVQNGETEESLPTPAENGSDGKEVQPAL
Nucleotide sequence
Length: 2,961
>Harore.CG.MTP2014.S83.g06119.01.t
AGCTTACTGGTGTTCTATTAGACTTTCATAAAAACTGTCAGTAACTTGTATTCATAACTC
TATATATCCACTATGGATGAGCGAACTTTAGAAGTGCGTGGCTCTAACGGAGCCTATTAC
AAAGCGTTCCTATGCGACATACAACCGACAGGAGTCCTCGTAACTTTCGAGAACAACTGG
CAGCCAGAAAGAGTCATACCGTTTCAGGAAGTACGCCTCGCCAGCTGTGGAAATCCAAAA
ACTGACGAGTTTATTGAAGGTCAGGAGGTGGAGGTTCACACCAGAGCGAACGACAATGAA
CCTTGCGGATGGTGGCATTCCCGGATCAAGATGAGCAAAGGGGAATTTTTTGTCATAGAA
TACCAGTGCGATACCAAATATACAGAGATCGTTACGAAGGATCGCTTGCGTCACATGAAC
AAAAACCTGCCGCTATCCCCTGATAAAATGAAGAAAATTTCGTTAGACGTCCCGCCAGAT
CTACAGGACTTCTGTACCAAATACATCGATGCCCACAAAGAATTTGAGCGCAGCACGGGA
GCGGTCATGGTGAAATATTCCACGACGCAGAAGAAACTAGATGTGATCGTGACGAGTGTG
TCGGCCCACCGTCGAGTCACCATAGTGGCTGACTTGCATTTTAGAGGTTTGCGAACGAAA
CTCGGCATGTTACAACGTGTCGAAGAAGCTTCAAAACATCTGGAGATGTCGCAGCAGCGA
GCAGAATCGTGTGTGGAGAGATTCTCCGTTCAAGAAGATCTCGTCGGTTTGGCTATCGGT
ACCGGCGGAGCAAACATAATGACGGCACGTAAGATCCCCGGGGTCGTGGACATTGTGCTA
GACGAGGCTACTCACACTTTTAGTATTTATGGGGAGACAAAAGAAGCCGTTAGTCAAGCG
AGGGACATCCTTGAATTCTGCGAAGATGAGGTAATTGTGCCAAGAGCTTACGTCGGAAAA
GTTATTGGGAAAAAAGGAGCGACTATACAAGAGATGATCGACAAATCAGGGGTGCTCCGA
GTTCGAGTCGTTGGAGACGAAGAGAACACTGATAAGAAAAACGAGCCCGGATTGGTTCCC
TTCCGCTTCGTCGGGACGAGAGAAAGTATTAGGAACGCCAAAGCATTGTTGGATTATCAT
GTCGCTTATTTGAGGGATCTCGATCAGTTACGAATGGAACAGTTAAGTATTAATCAACGT
ATCAAACAGCTTGATGGTAACTTCTCTGCTTCCCAACTCTCCATGGGAGGCCTCCCTCCT
CAGGCTGAGAGTGACACTGACGGTAACTACAGACGCCGACGATACGGTCCCTCTAAAGGT
GGGCGGTATAGAAAACGTGGCGGGGATGGCGACGGAACCACTACGAATTCCGAGATGTCT
AACATTTCCGACACAGGTTCAGAAACGAGTGACACACTGAGCGAAAATAAGTCTGTGGCA
GTTCCTCTTCCGCAACGAAGATATAGCAAAGAAAATCAGCATCACGCTGTGAATGGTAGT
GGTGATGGCAACAAAAATGTGAAGGGAAAAAATGAAGCCACAAACAACAACTCAAACCGA
AATAGATTTGAGGCTTTGAATGGAGTTAAAGATGATTCAGGAGAAGATGTTATACAAAAT
GGTACGGAAAAAGAAGTTAACGGAGTGAAAAACGACTCTGTAAATAACAGCAACGGCAAA
TCGATCGTTCCACCAGCAGGTGCCAAAAGCAAAAGCAAAAAGAAAAACAGGAACAAAAAC
AAAAAATCCAAAGCTGCAGAGATCGTCCAGAACGGTGAGACAGAAGAAAGTTTACCAACT
CCTGCTGAAAACGGCAGTGACGGTAAAGAAGTGCAACCGGCCCTTTAACAACGATTGTTA
ACCAGGGTTGGGTGTTGACGGTTTGGAAACCATGCATGTACTTGTATATACACCACAATG
ACGATCTTTCACACCTATTGACACCTACATATATATGAACTTATCTAAATAACGTCGCTG
TTTCTGCAGTGTTATGGATATCGTTGAATTTGAGGTTGGTTGTATTATTTACCTGGATTG
TTCTCTCTCCTGACACTCTTTCCTTATTTATTTTTAATCACGTGTTACTTTCACATGGCA
ATCTGCTGTACAGTGTGGTATTTCACAATTTGATTTTGAATGTAGGAACTATACTCTGAA
CGCAGTGGTTGTTCGCAATCAAAGTTTGAGAATTTGTTGATAGAGAAGGTAATCTGAAAT
AACGTCCATCAAAAGATCGTCCTTCAGATCAAGATTTTGAAAAATTTAATGCAATTAGAA
ACTGAAGTACATTTAGTTTAACTATTTAGGATTTGTTAAAAATGTACAAACCAGAATATT
TTCAAAACAAACAGTCAAGTACAAGTTTCCTGAATCTGTGTAATCCAATTTTGACATTTT
ACTATTTGTAAATCTGGTTCTAGTTCTTCTGTGTTGTTTAGCTCTTTGTCGCACATTTTG
TATCGGCAGATTTTTGTTTCGTTTTCGTTGTGCGATCGCCACTGTGTATGTTGAAACTTT
CATACTGTACTATTTTATTGGTCAAAAAGACTACCGCCACCACCCAGTTCGCTTAGGGTT
TTAGGAATATTTCACTAATTGTAGGTGTTGAAAAGCTTTACCAACTCACGATCCTAGAAT
ATCTCCAGTGAGAAATTCATGTAAATCTCTCAACTGTTTTACACTTCATTTTGGTAGCTT
TCACATTGACAAATTCACTATATCAATCTTTCTGTTGCGGCGATAGTGTGTAACCTTGGT
AGCAATGACCTTTAAATTGTATGATACCGCAATGCGACGGTGTGTCAGTCAACATATATC
ATGGTGGAATTCATTCTGTGTTGAGCACTTTCTTAAGTGAATTGTTTATTTATTATGATC
TCACATGTTCTGTATCTTCGAGTTCAAAATAAGCTTTTGGTCGTTGAGACAAAAAACTAA
ATGCGAACTATGGTAAATACA
| ProSiteProfiles |
Agenet-like_dom (IPR008395) - T[6-50] 10.651 - T[64-115] 19.871 |
| SMART |
KH_dom (IPR004087) - T[218-285] 0.032 - T[286-358] 0.0016 |
| Gene3D |
KH_dom_type_1_sf (IPR036612) - T[219-281] 4.3E-26 - T[282-361] 1.1E-23 |
| SUPERFAMILY |
KH_dom_type_1_sf (IPR036612) - T[220-287] 4.74E-10 - T[285-360] 4.1E-10 |
| Pfam |
KH_dom_type_1 (IPR004088) - T[222-280] 3.2E-4 - T[286-353] 2.9E-10 |
| Pfam |
FXMRP1_C_core (IPR022034) - T[356-454] 1.2E-10 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| FXR1_HUMAN | 48.23 % | 417 | 3.15E-139 |
| FXR2_HUMAN | 52.987 % | 404 | 2.88E-133 |
| FMR1_HUMAN | 51.335 % | 342 | 7.78E-110 |