- Transcript 'KH2012:KH.L8.11.v1.A...' >
- Transcript 'Boschl.CG.Botznik201...' >
- Region 'REG00000305' >
- Molecular Tool 'EpiB::NeuroD-like' >
- Transcript 'Harore.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S84.g07342.01.t
Possible name(s)
POC1B; TAF5; TAF5L
Gene model
Location
S84 [186,585 / 194,337]
Amino acid sequence
Length: 563
>Harore.CG.MTP2014.S84.g07342.01.p
IQYIPERKILVKGKMKRARSEQMQALILSYLKKRNYADSETTFKFDFKFEESIKAMASRV
TEEADFSSSLNPVSLTAFSIDEYFSSFEDFKHFAGKTAMGCSDITGACLYDLYSNGDPDD
NEILPDLQSDTKKQKKEKEKISDSKTTLKQDAVILSAPSMLSPSTPLFVDPSLPMIPEVD
ANTLHASIQSVYETKPMIGNVCLHRLQNTGSIGLTHVTLSNKLQLLCTGHEDSTARLWNF
TSNSSVSSVSNQNGSVDDPKPFQKPDRCRGSCQKSPDVSKIQLACHFYDSIQERLAKNSG
SDANKNSGCRCLRAHSGTVYASRFSHDDRYLLTSSEDTTVRLWDAMSCKNKVIYRGHSYP
VWCIGMSSYSLYFASGSQDKTARLWTTERTFPVRTFAGHHGDVECVEFHGNASYLASADK
TIRLWDLGSGKTVRLMLGHWASVGCLAFSPSGKYLASSGEDGRVRMWDIGSGVLIKEFRG
HNGMVYSLDFSQDGSMLASGGLDSNLFVWNTRTSQSPNTRNNTDTDDPNQNPDLIGKWNL
SAGSIHTVKFEACNLLHCIVSER
Nucleotide sequence
Length: 1,814
>Harore.CG.MTP2014.S84.g07342.01.t
ACATACAGTATATACCTGAAAGAAAGATCCTGGTAAAAGGGAAGATGAAACGCGCGCGTA
GTGAACAGATGCAAGCTCTGATTCTTTCGTATTTGAAGAAACGAAATTACGCTGATTCGG
AAACGACTTTCAAATTCGACTTCAAATTTGAAGAATCAATCAAGGCTATGGCATCTCGTG
TCACCGAAGAAGCCGACTTTTCGTCTTCACTCAATCCTGTTTCGCTCACCGCCTTTAGCA
TTGACGAATACTTTTCTTCATTTGAAGATTTTAAACATTTCGCTGGGAAAACTGCAATGG
GTTGTTCAGATATTACCGGTGCTTGCCTATATGATTTGTATTCGAACGGAGATCCTGATG
ATAATGAAATTCTCCCCGACTTGCAGAGCGACACAAAAAAACAGAAGAAGGAGAAGGAGA
AGATATCGGATAGTAAAACCACTCTCAAACAAGATGCAGTGATCCTTTCCGCACCTTCGA
TGCTGTCTCCTTCGACACCCCTCTTTGTGGATCCTAGCCTTCCAATGATTCCGGAAGTTG
ATGCAAATACCCTTCACGCTTCGATACAGAGCGTGTATGAAACCAAACCAATGATTGGAA
ATGTTTGTCTTCACAGGTTACAAAATACTGGATCTATCGGTCTTACTCACGTCACACTTT
CAAATAAACTTCAGTTATTATGCACAGGCCATGAAGATTCAACAGCTCGTCTTTGGAATT
TTACATCGAATTCTTCAGTATCATCCGTCTCGAATCAAAATGGTTCCGTTGATGATCCAA
AACCATTTCAAAAACCTGACCGGTGCCGCGGGTCATGCCAAAAGTCCCCTGACGTTTCAA
AAATTCAACTAGCTTGCCATTTCTACGACAGCATTCAGGAGAGACTTGCCAAAAATTCCG
GATCAGATGCGAATAAAAATTCGGGGTGTAGATGTCTTCGAGCACATTCAGGAACCGTTT
ACGCATCCCGTTTCAGTCATGATGATCGGTATTTGCTAACTAGTTCAGAAGACACTACAG
TTCGACTTTGGGATGCCATGTCGTGCAAGAATAAAGTCATTTACAGAGGTCACAGTTATC
CGGTGTGGTGCATCGGAATGAGTTCATACAGCTTATACTTTGCCTCTGGTTCGCAAGACA
AAACCGCTCGACTTTGGACGACCGAGAGAACCTTCCCCGTGCGAACGTTCGCCGGTCACC
ACGGCGATGTGGAGTGCGTCGAGTTCCACGGAAACGCCTCGTACTTAGCAAGCGCGGACA
AAACTATTCGGTTATGGGATCTCGGTAGCGGAAAGACCGTGAGGTTGATGCTGGGGCATT
GGGCATCTGTGGGATGTTTAGCATTTTCACCCAGCGGAAAATACCTTGCATCATCGGGAG
AAGACGGCAGGGTCAGAATGTGGGATATCGGTTCCGGCGTGTTGATTAAGGAGTTCAGAG
GTCACAATGGTATGGTTTATTCGCTCGATTTTAGCCAAGACGGAAGCATGCTAGCGTCAG
GCGGTTTAGACTCTAATTTATTTGTTTGGAACACAAGAACGAGTCAGTCACCTAATACAA
GGAATAATACAGACACCGACGATCCAAACCAGAATCCAGATTTGATCGGCAAATGGAATC
TGTCAGCCGGCTCCATTCACACTGTTAAATTTGAGGCGTGCAATCTTCTGCATTGTATTG
TATCAGAAAGGTGACGAACATTGCTGCCGTATGGCGAACAACTAGAAAGTATGTTTTTCA
AACCTTTTTTATTAATAAACTGTAAAGTGCACCATAAACATATTCATTATTACTTAAGTT
AAGTCAGAATATCT
| SMART |
WD40_repeat (IPR001680) - T[199-239] 0.4 - T[305-344] 9.6E-8 - T[347-386] 7.0E-6 - T[389-426] 4.6E-6 - T[429-468] 2.8E-7 - T[471-510] 5.6E-10 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[201-418] 1.2E-32 - T[419-561] 7.9E-36 |
| Pfam |
WD40_repeat (IPR001680) - T[202-239] 0.14 - T[310-344] 2.9E-5 - T[351-385] 6.0E-5 - T[392-426] 2.1E-7 - T[432-468] 1.2E-8 - T[474-510] 5.2E-7 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[214-248] 8.537 - T[312-344] 14.686 - T[354-395] 11.411 - T[396-435] 11.277 - T[436-477] 16.123 - T[478-519] 15.922 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[215-242] 1.56E-64 - T[306-516] 1.56E-64 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[226-240] . - T[331-345] . - T[413-427] . - T[455-469] . - T[497-511] . |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[312-519] 52.914 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[331-345] 2.8E-7 - T[373-387] 2.8E-7 - T[455-469] 2.8E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1B_HUMAN | 32.178 % | 126 | 3.3E-31 |
| TAF5_HUMAN | 39.683 % | 233 | 1.27E-67 |
| TAF5L_HUMAN | 39.948 % | 275 | 8.41E-85 |