- Transcript 'KH2012:KH.C2.176.v1....' >
- Transcript 'KH2012:KH.C4.531.v1....' >
- Transcript 'Boschl.CG.Botznik201...' >
- Transcript 'Harore.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S84.g07342.02.t
Possible name(s)
POC1B; TAF5; TAF5L
Gene model
Location
S84 [186,543 / 194,355]
Amino acid sequence
Length: 679
>Harore.CG.MTP2014.S84.g07342.02.p
HHRKVHIQYIPERKILVKGKMKRARSEQMQALILSYLKKRNYADSETTFKFDFKFEESIK
AMASRVTEEADFSSSLNPVSLTAFSIDEYFSSFEDFKHFAGKTAMGCSDITDILYPVFCH
MYLDLVMAGRKSDAVKFLSHFENDVFSRSKECILTFKELSLIIQPSDVLNPSKVREFRRK
KYIVNMSRDSQALLLRYLQADSSLLVIKVVNLHIHVNVVNEGACLYDLYSNGDPDDNEIL
PDLQSDTKKQKKEKEKISDSKTTLKQDAVILSAPSMLSPSTPLFVDPSLPMIPEVDANTL
HASIQSVYETKPMIGNVCLHRLQNTGSIGLTHVTLSNKLQLLCTGHEDSTARLWNFTSNS
SVSSVSNQNGSVDDPKPFQKPDRCRGSCQKSPDVSKIQLACHFYDSIQERLAKNSGSDAN
KNSGCRCLRAHSGTVYASRFSHDDRYLLTSSEDTTVRLWDAMSCKNKVIYRGHSYPVWCI
GMSSYSLYFASGSQDKTARLWTTERTFPVRTFAGHHGDVECVEFHGNASYLASADKTIRL
WDLGSGKTVRLMLGHWASVGCLAFSPSGKYLASSGEDGRVRMWDIGSGVLIKEFRGHNGM
VYSLDFSQDGSMLASGGLDSNLFVWNTRTSQSPNTRNNTDTDDPNQNPDLIGKWNLSAGS
IHTVKFEACNLLHCIVSER
Nucleotide sequence
Length: 2,204
>Harore.CG.MTP2014.S84.g07342.02.t
TTCATCATCGAAAGGTTCACATACAGTATATACCTGAAAGAAAGATCCTGGTAAAAGGGA
AGATGAAACGCGCGCGTAGTGAACAGATGCAAGCTCTGATTCTTTCGTATTTGAAGAAAC
GAAATTACGCTGATTCGGAAACGACTTTCAAATTCGACTTCAAATTTGAAGAATCAATCA
AGGCTATGGCATCTCGTGTCACCGAAGAAGCCGACTTTTCGTCTTCACTCAATCCTGTTT
CGCTCACCGCCTTTAGCATTGACGAATACTTTTCTTCATTTGAAGATTTTAAACATTTCG
CTGGGAAAACTGCAATGGGTTGTTCAGATATTACCGACATATTGTATCCAGTGTTCTGTC
ACATGTACCTCGACCTTGTGATGGCCGGTAGGAAAAGCGACGCCGTGAAGTTCCTCAGCC
ATTTCGAGAACGATGTGTTCTCCAGAAGTAAAGAGTGCATATTGACTTTCAAAGAATTGT
CACTCATCATCCAACCATCAGACGTACTCAACCCATCCAAGGTCAGAGAATTCAGAAGAA
AAAAATATATTGTCAACATGTCGCGAGATTCACAAGCACTACTGTTAAGATATTTGCAAG
CAGATTCGTCCCTGCTTGTTATCAAGGTTGTCAATCTTCACATCCATGTAAATGTTGTCA
ATGAAGGTGCTTGCCTATATGATTTGTATTCGAACGGAGATCCTGATGATAATGAAATTC
TCCCCGACTTGCAGAGCGACACAAAAAAACAGAAGAAGGAGAAGGAGAAGATATCGGATA
GTAAAACCACTCTCAAACAAGATGCAGTGATCCTTTCCGCACCTTCGATGCTGTCTCCTT
CGACACCCCTCTTTGTGGATCCTAGCCTTCCAATGATTCCGGAAGTTGATGCAAATACCC
TTCACGCTTCGATACAGAGCGTGTATGAAACCAAACCAATGATTGGAAATGTTTGTCTTC
ACAGGTTACAAAATACTGGATCTATCGGTCTTACTCACGTCACACTTTCAAATAAACTTC
AGTTATTATGCACAGGCCATGAAGATTCAACAGCTCGTCTTTGGAATTTTACATCGAATT
CTTCAGTATCATCCGTCTCGAATCAAAATGGTTCCGTTGATGATCCAAAACCATTTCAAA
AACCTGACCGGTGCCGCGGGTCATGCCAAAAGTCCCCTGACGTTTCAAAAATTCAACTAG
CTTGCCATTTCTACGACAGCATTCAGGAGAGACTTGCCAAAAATTCCGGATCAGATGCGA
ATAAAAATTCGGGGTGTAGATGTCTTCGAGCACATTCAGGAACCGTTTACGCATCCCGTT
TCAGTCATGATGATCGGTATTTGCTAACTAGTTCAGAAGACACTACAGTTCGACTTTGGG
ATGCCATGTCGTGCAAGAATAAAGTCATTTACAGAGGTCACAGTTATCCGGTGTGGTGCA
TCGGAATGAGTTCATACAGCTTATACTTTGCCTCTGGTTCGCAAGACAAAACCGCTCGAC
TTTGGACGACCGAGAGAACCTTCCCCGTGCGAACGTTCGCCGGTCACCACGGCGATGTGG
AGTGCGTCGAGTTCCACGGAAACGCCTCGTACTTAGCAAGCGCGGACAAAACTATTCGGT
TATGGGATCTCGGTAGCGGAAAGACCGTGAGGTTGATGCTGGGGCATTGGGCATCTGTGG
GATGTTTAGCATTTTCACCCAGCGGAAAATACCTTGCATCATCGGGAGAAGACGGCAGGG
TCAGAATGTGGGATATCGGTTCCGGCGTGTTGATTAAGGAGTTCAGAGGTCACAATGGTA
TGGTTTATTCGCTCGATTTTAGCCAAGACGGAAGCATGCTAGCGTCAGGCGGTTTAGACT
CTAATTTATTTGTTTGGAACACAAGAACGAGTCAGTCACCTAATACAAGGAATAATACAG
ACACCGACGATCCAAACCAGAATCCAGATTTGATCGGCAAATGGAATCTGTCAGCCGGCT
CCATTCACACTGTTAAATTTGAGGCGTGCAATCTTCTGCATTGTATTGTATCAGAAAGGT
GACGAACATTGCTGCCGTATGGCGAACAACTAGAAAGTATGTTTTTCAAACCTTTTTTAT
TAATAAACTGTAAAGTGCACCATAAACATATTCATTATTACTTAAGTTAAGTCAGAATAT
CTTGTGATTAAAAATGCCCATTGGCTTGTTGAGTTTTATGACTT
| Gene3D |
TFIID_NTD2_sf (IPR037264) - T[63-220] 5.1E-27 |
| Pfam |
TFIID_NTD2 (IPR007582) - T[88-214] 9.9E-23 |
| SUPERFAMILY |
TFIID_NTD2_sf (IPR037264) - T[105-220] 4.71E-24 |
| CDD |
TFIID_NTD2 (IPR007582) - T[113-220] 8.56498E-25 |
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[313-533] 1.7E-32 - T[534-677] 7.4E-36 |
| SMART |
WD40_repeat (IPR001680) - T[315-355] 0.4 - T[421-460] 9.6E-8 - T[463-502] 7.0E-6 - T[505-542] 4.6E-6 - T[545-584] 2.8E-7 - T[587-626] 5.6E-10 |
| Pfam |
WD40_repeat (IPR001680) - T[318-355] 0.17 - T[426-460] 3.6E-5 - T[467-501] 7.6E-5 - T[508-542] 2.7E-7 - T[548-584] 1.5E-8 - T[590-626] 6.5E-7 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[329-358] 2.38E-64 - T[422-632] 2.38E-64 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[330-364] 8.537 - T[428-460] 14.686 - T[470-511] 11.411 - T[512-551] 11.277 - T[552-593] 16.123 - T[594-635] 15.922 |
| ProSitePatterns |
WD40_repeat_CS (IPR019775) - T[342-356] . - T[447-461] . - T[529-543] . - T[571-585] . - T[613-627] . |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[428-635] 52.914 |
| PRINTS |
G-protein_beta_WD-40_rep (IPR020472) - T[447-461] 4.6E-7 - T[489-503] 4.6E-7 - T[571-585] 4.6E-7 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| POC1B_HUMAN | 32.178 % | 126 | 6.7E-31 |
| TAF5_HUMAN | 31.023 % | 269 | 1.01E-79 |
| TAF5L_HUMAN | 34.247 % | 357 | 4.43E-115 |