- Transcript 'Harore.CG.MTP2014.S8...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S868.g15629.01.t
Possible name(s)
ALYREF; POLDIP3
Gene model
Location
S868 [12,937 / 17,621]
Amino acid sequence
Length: 285
>Harore.CG.MTP2014.S868.g15629.01.p
NPERRALTSRLNTGIKIAVRNELALTKPPAVLQKKTFERIKITTVNKEAMQKMLCYSEKS
FYQISRRTTLCFVFQKPSPPPPKQIRKRQLSPPVKEFEDEVYEDDQGGGKNFMIKRVKTN
ESSLKSLRPVQLQPTKKVIAAEKEPVAVGPSPIEGTKLKVFNLHPVVSEDDILELFSVLG
AVRRARLVKPGEAEVVYIRHDNAVAAFKKYNNRDLDGQPMEIKFVETEITKPPIVYSWMN
EVKSSRKKSEPGEVTELSGGVLQQALFKGGSTGTSTRPVVFTVKI
Nucleotide sequence
Length: 2,780
>Harore.CG.MTP2014.S868.g15629.01.t
AATCCTGAGAGAAGAGCTTTAACTTCACGACTGAACACAGGAATTAAAATTGCCGTCAGA
AATGAACTCGCATTAACAAAACCGCCAGCAGTTCTACAGAAAAAAACATTTGAAAGAATT
AAGATAACAACTGTTAATAAAGAAGCAATGCAAAAGATGTTATGTTATAGTGAAAAGTCT
TTCTATCAAATTTCTCGACGTACAACACTGTGTTTTGTTTTTCAGAAACCCTCTCCACCA
CCTCCCAAGCAAATCAGAAAAAGACAACTCTCTCCACCGGTTAAAGAATTTGAAGATGAA
GTGTACGAGGATGATCAAGGTGGAGGAAAAAATTTCATGATCAAACGTGTGAAAACGAAC
GAAAGTTCATTGAAATCATTGAGACCAGTTCAATTGCAACCAACTAAAAAAGTTATAGCT
GCTGAAAAGGAACCCGTTGCTGTAGGACCAAGCCCGATAGAAGGAACCAAGCTCAAAGTC
TTCAATCTTCATCCAGTAGTGTCAGAAGATGACATCTTGGAACTGTTCAGCGTTCTTGGT
GCTGTACGAAGAGCACGTTTAGTTAAACCAGGTGAAGCTGAAGTTGTCTACATAAGGCAT
GATAATGCAGTGGCTGCATTCAAGAAATATAACAACAGAGATCTTGATGGACAACCGATG
GAAATCAAATTCGTTGAAACTGAGATAACGAAACCACCTATAGTCTACAGTTGGATGAAT
GAAGTAAAAAGTTCTCGTAAGAAATCTGAACCAGGTGAAGTGACTGAGCTGAGTGGTGGA
GTTCTTCAACAAGCTCTATTCAAAGGAGGAAGCACGGGTACATCGACAAGACCTGTTGTA
TTCACTGTCAAAATTTAAACAAGCAAGCATGCGAAAAACTTTTAACCTGGATATGAAGGA
AACGCTTCATGTCACGGCTGAGAAATTGTTTTAAAAAAAAGTGATTTCTTAGTGCTTAGA
ATTTTATCAGGATTTCAAGTTGATATAGTTTCCAAGCTGCATTTCCCTGTATACGTTACC
GAGACAATTTGCAAACGCAGAATGGAAAATACATGTTTTACCCCCCAAGCATCAATTCAT
GGTTACTCATATCGTTAATTTTTGTGATTATAATATACTAGACCTCACCCCAAGCTCAAA
CCAACCTGTACTGGGATCTGTGACCCACCCTTACTGCAGTGTAGGCAGGTAAGGCCCTGA
TGTATAAGTTCATTTAAGGTTGTATATAAATATATATGAACGAGGGATGTTTTACGAATT
CAAGGTTAGGGTCAGGGGTGCGATATAGATACTGTTTGAATCGTAGGTTGGGGTAAGGGG
TATGTTTTTATTTGACCCCAATATAAAGTAAACTAAATTTCAACTTTGTTGTATTTTAGT
CAGTGACACGGATTCCGGCAAGTTATTTCCAAATCAAGTTTATTCTTTTTTTGCCAAGTA
ATTATTTTTATGTATTCCTACGACGTCATCACATAGATGTACCTCAGTAACATATACAGG
GAAATTACCACTATTTAAACTACTTAGAAATAGCTTGCCTATTTTAGAACTATGTTCAGT
GTTTATACAGGTTGAAATTTTTGACATTTAGTTAAAGAAAATTCAGTTTTAGGTGTAAAT
GGTTTCCATGTCATGTAGGGTGATAGTGCCACTGTCCTTGCTGGGTTAAGTGGAGCCAAA
ATTCCTGAAATTTGGCACTTTTTGGAATTAGTTGGTTCCTAAAAATTTGATAACATGCAT
ATATAGCAGATCATTTATTTTGGCCCAAGTTTGGTACTTTCTGAATATCGATTGGCTCTG
ATTCTTTTATCTGGCAACTATGTATTCCAATATGCTTTATGCTTTTCCCTCTATTGGTAC
AAGAAAAGATTCCGACCTCAATATAGAAATTGTATTATTAATAAAATTCAGCTGCATGCG
TATATATGGTTAGAGAAGTAAAGTACTCTTCACTTAACAACTATCTGGTTTAATGACCTC
TTAAACTTACAACAGTTAGATAGTGTTTTCGTTTATCTTTAGGAATTTTGTTATTCAGAT
AATTCATATATAGAGGTTATACTTGGTAACTTTTCATTCTCTCATTGACTCACTGTTGGG
TAACATAAGATATTTTCCAGATTGTTGGAGCCTGGTCGTTAAGTAAGAGGGTTGTTTACA
GACCTATTCGCTTCACGAGTCATTCAAACAAATCCTAGGTCCTTAAGGGGTTCGTTCTCA
AACCAATTCACTACACCAGGTCGTTGGAACAAAACCAGGGTCCTCAACTGAGGAGTTTCT
GTATTACACTGTATAAATTGTAATTAGTTCTTATTTTTTCATTTTTATGCTGTCATAGCA
TTGCTCCAGGTAATGTACTCACTCATCTCTTTTCCAAATTCAAATTTTAACTAATTTTCA
GTTGATACTTTCGCTCAATTATTTGCAGTCAGGTCATAACCTTATTGTTAGTTTCACGAC
CCATTTCCGTGACCAAGCTTTCGCTAGAATGCATGAAACGTTTTTCAAACTCACAGCAAG
AATTTTATTTCAAAATCAAAGCTCTGTTATAAAAATAAAGTTCATTTTGCTAAAATATGG
AAACATTGGTAATGGAAGAATTCAGGGAAGCATTTTGCTATGCATAGTGGTTGGCTATTA
AGCCAGGGTACTCAAACCTTTTACAATGGGTGGGAGGAGGGGCGGGGGGACTTGATCCCT
CTGACCCCTAGATTTCATGTATCGCTAACAATAACCATTAAGAAGAGGCAATATGATAAT
GGCCCAGGGCACCCAACCTT
| PANTHER |
PDIP3 (IPR034785) - T[81-226] 1.3E-42 |
| Gene3D |
Nucleotide-bd_a/b_plait_sf (IPR012677) - T[95-231] 1.7E-12 |
| SUPERFAMILY |
RBD_domain_sf (IPR035979) - T[145-231] 6.72E-16 |
| CDD |
PDIP3_RRM (IPR034784) - T[156-223] 9.8757E-34 |
| ProSiteProfiles |
RRM_dom (IPR000504) - T[156-227] 11.708 |
| SMART |
RRM_dom (IPR000504) - T[157-223] 9.1E-11 |
| Pfam |
RRM_dom (IPR000504) - T[160-220] 1.2E-8 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| PDIP3_HUMAN | 43.03 % | 118 | 1.39E-30 |