- Transcript 'Harore.CG.MTP2014.S9...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S929.g02432.01.t
Possible name(s)
HDAC1; HDAC2; HDAC3
Gene model
Location
S929 [4,480 / 8,583]
Amino acid sequence
Length: 570
>Harore.CG.MTP2014.S929.g02432.01.p
MALTNPTNRKVCYYYDSDVGNYYYGQGHPMKPHRIRMTHNLLLNYGLYRKMEIFRPHKCS
SEEMTKYHSDDYIKFLRSIRPDNMSEYTKQMQRFNVGEDCPVFDGLYEFCQLSGGGSIAG
AVKINKQQTDIAINWGGGLHHAKKSEASGFCYVNDIVLAILELLKYHQRVLYIDIDIHHG
DGVEEAFYTTDRVMTVSFHKYGEYFPGTGDLRDIGAGKGKYYALNFPLRDGMDDASYEQI
FQPVVTKVMEYYQPSAVVLQCGADSLTGDRLGCFNLTVKGHAACLEFVKKFNAPVLMLGG
GGYTIRNVARCWTFETAVALGQEIPNELPYNDYFEYFGPDFKLHISPSNMTNQNTPEYLH
KIRQRLFENLRMLPHAPGVQMSDIPADAVPDESDDEEVEDSDKRISMRASDKRIQRDNEF
SDSEDEGEEGGRKNVESFKKKRKGGSDTKIMDVKRFYDGKNGTDDVKKENEESKPSEPAD
PKKEKESESTAMETSSGEVKEPDNALKASNKEEEIKNEGASAGDEKAKEENSVTKESEGT
AESADGQTNPAENSTDPASDEKDAIEEMEI
Nucleotide sequence
Length: 1,713
>Harore.CG.MTP2014.S929.g02432.01.t
ATGGCGTTAACTAATCCAACGAACCGAAAAGTATGCTATTATTATGACTCTGATGTTGGA
AATTATTACTATGGCCAGGGTCATCCCATGAAGCCTCATCGTATACGCATGACACACAAT
CTCTTGCTCAATTATGGCTTGTATCGAAAAATGGAAATTTTTCGTCCTCATAAATGCAGC
AGCGAAGAAATGACCAAATATCACAGCGACGACTATATTAAATTTCTTCGCAGCATACGT
CCTGACAACATGTCAGAGTACACAAAGCAAATGCAAAGATTCAACGTCGGTGAAGACTGT
CCCGTGTTTGATGGCCTTTATGAGTTTTGTCAACTATCTGGTGGTGGTTCTATCGCCGGA
GCTGTGAAAATCAACAAACAGCAGACTGACATAGCGATTAATTGGGGTGGTGGACTCCAT
CATGCTAAGAAATCAGAGGCTTCTGGTTTCTGTTATGTGAATGACATTGTGCTGGCTATC
CTTGAGCTGTTGAAGTATCATCAACGCGTTCTCTACATTGATATCGATATCCACCATGGT
GATGGCGTCGAGGAAGCCTTCTACACCACTGATCGAGTTATGACTGTTTCCTTTCATAAA
TACGGAGAGTATTTCCCAGGCACCGGAGATCTGAGAGATATCGGGGCTGGTAAAGGCAAG
TATTATGCGTTGAATTTTCCCCTTCGTGATGGGATGGACGATGCTTCATATGAACAGATA
TTTCAGCCTGTTGTTACCAAGGTAATGGAATATTATCAACCGAGTGCTGTAGTGCTACAG
TGTGGTGCTGATTCCCTGACTGGAGATCGTTTAGGTTGTTTTAATTTGACTGTGAAAGGT
CACGCTGCTTGTCTTGAATTTGTTAAAAAATTCAATGCTCCCGTGCTAATGCTTGGTGGT
GGTGGATATACCATTAGAAATGTGGCAAGGTGTTGGACGTTCGAAACAGCCGTTGCTCTT
GGCCAAGAAATCCCTAATGAGCTTCCGTATAACGACTACTTCGAATACTTTGGACCTGAT
TTCAAGCTTCACATCAGCCCAAGCAATATGACGAATCAGAACACTCCAGAATACTTGCAC
AAAATCCGACAACGATTATTTGAAAATCTTCGTATGCTTCCTCATGCCCCCGGGGTTCAA
ATGTCAGATATTCCTGCTGATGCTGTGCCTGATGAAAGTGACGATGAAGAGGTCGAGGAT
TCAGATAAACGGATTTCAATGCGTGCATCAGACAAGCGAATACAGAGGGATAATGAATTC
TCCGATTCAGAGGACGAAGGAGAGGAGGGTGGCAGGAAAAACGTAGAATCCTTCAAGAAA
AAGCGAAAAGGGGGTTCCGATACCAAAATCATGGACGTGAAAAGATTTTACGATGGTAAA
AACGGTACAGATGACGTTAAAAAAGAGAACGAAGAATCCAAACCTAGTGAGCCGGCAGAT
CCAAAGAAGGAGAAGGAATCTGAGAGTACTGCCATGGAAACATCTTCCGGAGAAGTGAAA
GAGCCAGACAATGCTTTGAAGGCGTCAAATAAAGAGGAAGAAATAAAAAACGAAGGAGCT
TCTGCTGGAGATGAAAAAGCAAAAGAAGAAAATTCTGTTACAAAGGAGTCGGAGGGAACA
GCAGAGTCTGCGGATGGTCAGACAAATCCTGCAGAGAATAGCACAGATCCAGCATCTGAT
GAGAAAGACGCCATAGAAGAAATGGAAATTTAG
| Gene3D |
His_deacetylse_dom_sf (IPR037138) - T[1-376] 1.1E-172 |
| PANTHER |
His_deacetylse (IPR000286) - T[7-487] 1.1E-260 |
| SUPERFAMILY |
Ureohydrolase_dom_sf (IPR023696) - T[9-373] 5.28E-131 |
| Pfam |
His_deacetylse_dom (IPR023801) - T[28-316] 1.8E-82 |
| PRINTS |
His_deacetylse_1 (IPR003084) - T[30-47] 5.7E-71 - T[63-81] 5.7E-71 - T[94-111] 5.7E-71 - T[115-135] 5.7E-71 - T[156-172] 5.7E-71 - T[215-228] 5.7E-71 - T[232-250] 5.7E-71 |
| PRINTS |
His_deacetylse (IPR000286) - T[137-160] 2.6E-24 - T[169-184] 2.6E-24 - T[254-264] 2.6E-24 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| HDAC1_HUMAN | 83.747 % | 775 | 0 |
| HDAC2_HUMAN | 80.042 % | 790 | 0 |
| HDAC3_HUMAN | 59.574 % | 558 | 0 |