- Transcript 'KH2012:KH.C1.1261.v1...' >
- Transcript 'Harore.CG.MTP2014.S9...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S93.g04073.01.t
Possible name(s)
CACNA1C; CACNA1D; CACNA1S
Gene model
Location
S93 [163,529 / 182,618]
Amino acid sequence
Length: 1,803
>Harore.CG.MTP2014.S93.g04073.01.p
MEPQDSPSLQDHGQIKKLLLASDSAGLLQYVVISHRTLQTTAMADISTRSVLNWTNVLKY
NHDHYRKNQPEVMRVNQLDIANLANKILLTLFTIEMLVKMYSLGMQQYFVSLFNRFDCFV
VCGGIVELVLTSSKIMEPLGISVLRCVRLLRIFKMTSSWNSLSNLVASLLNSIRSIASLL
VLLFLFIIIFALLGMQMFGGRFSEIEQEDKIRSNFDTFLQALLTVFQILTGEDWNVVMYN
GIEAYGGASTIGLLTSVYFIVLFIGGNYILLNVFLAIAVDNLADAESLGAAQKEKEEEKK
MKKTLRLKKLRKLFKKKDQTSVENQEVNQEDTLNRVEEMPNYYTPDHDIRIEVTEASDTN
SDKHLPEVSDGEMEPEVPVGPRPRRMSEMHLSEKKVPLPEGSSFFILSNTNRLRVFCYDI
VNYNWFNNAILACIILSSIALACEDPVSAHSARNKVLEYFDYVFTGVFAVEIVLKMTAFG
VFLHKGSFCRSYFNLLDLLVVAVSLVSMLSNSDKFSVVKILRVLRVLRPLRAINRAKGLK
HVVQCVFVAISTIGNIMVITGLLQFMFACIGVQLFKGRLYYCTDQSKETKEECHGKFFVY
SKDGNGEPRVEERLWENSEFNYDNVMNAMLTLFVVATFEGWPGLLYKSIDSWSENHGPRY
DARQAVALFYFVFIIVIAFFMMNIFVGFVIVTFQEQGEQEYKNCELDKNQRQCLEYALKA
KPVKRYIPKNPWQYKVWFIVNSTYFEYFMLVLILLNTVCLAVQHHQQSKELTVILNHMNY
VFTALFALEMIVKLVAYKPRFWNKLIIFTYEVIIVLQRPVSLTFVASDFQTQGYLSDPWN
VFDSLIVIGSIVDIVFSELDHNYFADPWNSFDALIVLGSIADVIASIARTGNEKSFSINF
FRLFRVLRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIIMLFFIYAVIGMQIFGKIKP
NDGSQINRNNNFQTFLQAVLLLFRCATGESWQEVMLACASGNECDDESDWNYYGDKDISA
KFTCGNDFAYTYFLTFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGLHHLDEFVRVWSE
YDHEASGRIKHLHVVKLLRHIQPPLGFGKLCPQRMACRKLVSMNMPLNSDGTVMFNATLF
ALVRTSLKIKSEGNIDQANEELRAVIKKIWKRTSMKLLDQVVPPAGNDDVTVGKFYATYL
IQDYFRKFKESKERRLREADGRHHPNNANTLTLQAGIREVQDVSPELKRSISGNLVPNEY
EESELVSMDDEPEHRRRHSIFGQLRSLASPGTPVMTSRRPLTVSDNTPAVGHRKHEQNSD
QNPLVNRLTPQQPFPNATPSHAQATEKSVNRSLDGIHTMPRDANIGRHHGSIDDFSRYHK
SPTQPDGFVVEPTFTSHNTNRNNSANPTECMVHRPNGKCQKMQRAYSEEDKGERGDRNFI
VPYLSMDGGMNTVQHWGRDAREQRPCYCGKPRRLLRPCSKRSLNLDYTPLQRNETPVKSP
TTENLSKRTLQSCDRSFSFPGKNRIDSFTSIEDECLLSRDSRDADSIFFNEIGGSGISSS
DSDMFESDSGSFDDECGSVRTYRTANTISPQCAFKTFSEVNSQPGSKSDVASRRKLPPTP
EAPSRIFRLPMMSKNWRKSRENMPLCDIKTSETAPLINSRNETSFHRNSIPRHKLTRQFS
TNYDNRHHADDMDYRRDNEVIIYNKGDDGRGCSKTRSFVQIFQSLTNGDSDNDSTNVCQP
KSYCRSDSVWDEEEETPIKRSQVEISPSGSRTRSPVPRNGHEGCIERDEEADLASEMIVP
NVK
Nucleotide sequence
Length: 7,207
>Harore.CG.MTP2014.S93.g04073.01.t
ATGGAACCGCAAGACTCGCCGTCGCTGCAGGACCATGGTCAAATCAAAAAGCTTCTATTG
GCTAGTGATAGTGCTGGTCTTCTGCAATACGTTGTCATTAGCCACCGAACATTACAGACA
ACCGCCATGGCTGACATTAGCACAAGATCCGTGCTTAATTGGACCAACGTGTTAAAATAC
AATCACGATCATTATCGTAAAAACCAACCAGAAGTGATGAGGGTTAATCAGTTAGACATA
GCAAACTTGGCGAACAAGATCCTCTTAACACTCTTCACTATCGAGATGCTCGTCAAAATG
TATTCGCTTGGAATGCAGCAATACTTTGTATCACTTTTCAATCGTTTCGATTGCTTCGTC
GTTTGCGGTGGTATCGTGGAGCTCGTTCTCACAAGTTCAAAGATCATGGAACCATTGGGA
ATATCTGTGCTGCGTTGCGTGAGACTGCTAAGGATATTCAAAATGACGAGCTCATGGAAT
TCGCTAAGTAACCTCGTCGCCTCACTTCTGAATTCGATCCGATCCATTGCCAGCTTGCTC
GTCCTCCTTTTTCTCTTCATAATAATCTTTGCACTGCTCGGAATGCAGATGTTTGGTGGC
CGGTTCAGCGAAATTGAGCAAGAAGACAAAATCAGGTCCAACTTCGATACCTTCCTTCAG
GCTTTGCTTACGGTCTTCCAGATACTTACAGGCGAAGATTGGAATGTTGTCATGTACAAC
GGAATCGAGGCATATGGTGGAGCAAGCACGATTGGGCTTTTGACGAGCGTCTATTTCATT
GTTCTGTTTATTGGCGGTAATTACATTTTATTGAATGTCTTCTTGGCTATCGCAGTTGAC
AATTTAGCAGATGCCGAGAGCCTAGGAGCTGCTCAAAAAGAGAAAGAGGAGGAAAAAAAG
ATGAAGAAGACATTGCGACTAAAGAAATTGAGAAAACTTTTCAAGAAAAAGGACCAGACA
AGTGTTGAAAACCAGGAAGTCAATCAGGAAGACACTCTCAATCGGGTTGAAGAAATGCCG
AATTATTATACACCAGATCATGATATCCGCATTGAAGTAACAGAAGCTTCAGATACAAAT
TCGGACAAGCATTTGCCAGAAGTAAGTGATGGTGAGATGGAACCCGAAGTCCCGGTTGGA
CCAAGGCCGAGAAGAATGTCAGAAATGCATCTCTCTGAAAAAAAAGTTCCACTACCAGAG
GGTTCTTCTTTCTTCATCCTTAGTAACACGAACAGACTACGAGTTTTTTGTTACGACATT
GTCAACTACAATTGGTTCAACAATGCCATTCTTGCCTGCATCATTCTTAGCAGTATTGCC
CTTGCATGTGAAGATCCGGTGAGCGCACATTCAGCTCGTAATAAAGTTCTCGAATACTTT
GATTATGTATTCACTGGAGTATTTGCTGTTGAAATCGTTCTAAAAATGACAGCATTTGGC
GTCTTTCTGCATAAAGGTTCTTTTTGCCGAAGTTATTTCAATTTGCTCGATCTCCTGGTT
GTCGCAGTTTCCCTTGTGTCCATGCTGAGCAACTCAGACAAATTCTCTGTTGTGAAAATT
CTTCGTGTTCTTCGCGTCCTTCGACCTTTACGTGCTATCAATCGAGCGAAAGGGTTGAAA
CATGTAGTTCAGTGTGTTTTTGTGGCCATCAGCACTATCGGTAACATTATGGTAATCACC
GGACTTCTACAATTCATGTTTGCTTGTATCGGTGTCCAACTTTTCAAAGGTAGATTGTAC
TACTGCACAGATCAGTCGAAAGAGACCAAAGAGGAATGCCATGGAAAGTTCTTTGTGTAT
TCCAAAGATGGGAATGGTGAACCAAGAGTGGAAGAAAGATTGTGGGAAAATAGTGAATTT
AATTATGACAATGTGATGAACGCTATGCTGACGCTCTTTGTTGTTGCTACGTTCGAAGGA
TGGCCTGGGCTGCTTTACAAGTCAATCGATTCATGGAGCGAAAACCATGGGCCGAGATAT
GATGCCCGTCAAGCAGTCGCTTTGTTTTATTTCGTCTTCATTATCGTCATTGCTTTCTTC
ATGATGAATATATTTGTCGGTTTCGTTATTGTTACGTTTCAAGAGCAAGGAGAACAAGAA
TATAAAAACTGTGAACTAGACAAAAATCAGAGGCAATGCTTGGAATATGCACTCAAAGCC
AAACCAGTAAAGCGGTACATTCCAAAAAATCCATGGCAGTACAAAGTGTGGTTTATCGTC
AACTCCACTTATTTTGAGTACTTCATGCTGGTGCTCATTCTCTTGAACACAGTTTGTCTA
GCAGTGCAGCACCACCAGCAATCAAAGGAGTTGACGGTAATTCTGAACCACATGAACTAC
GTGTTCACAGCTCTATTTGCACTTGAAATGATTGTTAAATTAGTTGCATACAAACCACGG
TTTTGGAATAAGCTAATTATCTTTACTTATGAAGTAATTATTGTGCTACAGAGACCCGTA
AGTCTTACTTTTGTCGCTTCGGATTTTCAAACGCAGGGATATTTGAGCGATCCTTGGAAC
GTATTCGACTCTCTCATTGTAATAGGCAGTATTGTAGACATCGTATTTTCAGAGCTGGAC
CATAATTATTTTGCCGACCCTTGGAATTCCTTTGATGCATTAATAGTGCTTGGTAGCATT
GCTGATGTAATTGCTTCAATCGCCCGTACCGGGAATGAAAAATCTTTCAGCATCAATTTC
TTCCGACTTTTTCGTGTACTGAGGTTGGTTAAACTTCTCAGCAGGGGTGAGGGCATCAGA
ACTTTGCTCTGGACCTTTATCAAATCCTTCCAGGCACTGCCATATGTCGCATTACTGATC
ATCATGCTGTTCTTCATCTACGCCGTTATTGGAATGCAAATATTTGGGAAAATCAAGCCT
AATGATGGAAGTCAGATCAATCGTAACAACAATTTTCAAACCTTTCTCCAAGCCGTCCTC
CTGCTCTTCAGATGTGCTACTGGAGAATCTTGGCAAGAGGTCATGTTGGCCTGTGCCTCC
GGTAATGAGTGTGATGATGAATCTGACTGGAACTATTATGGCGATAAAGACATTTCGGCC
AAGTTCACATGCGGCAATGATTTCGCTTACACTTATTTCCTTACCTTCTACATGCTTTGC
GCTTTCTTGATCATCAATCTGTTCGTAGCAGTTATCATGGACAATTTTGATTATTTAACA
AGAGATTGGTCGATTCTCGGCCTTCACCATTTAGATGAATTCGTCCGAGTGTGGTCAGAG
TATGATCACGAGGCAAGTGGAAGAATAAAGCATTTACATGTCGTAAAATTACTCCGACAC
ATACAACCGCCTCTTGGCTTTGGGAAACTTTGTCCACAGAGAATGGCCTGTAGGAAGTTG
GTCTCCATGAATATGCCTTTGAATAGCGATGGTACTGTCATGTTCAATGCAACCCTCTTC
GCTCTGGTTCGAACATCACTTAAAATCAAATCGGAAGGAAATATCGATCAGGCAAATGAA
GAGTTACGTGCCGTAATTAAAAAAATATGGAAAAGAACATCAATGAAACTTTTGGATCAA
GTGGTCCCACCTGCAGGAAATGACGATGTTACCGTTGGCAAATTTTACGCCACATACCTA
ATTCAAGACTACTTTCGCAAATTCAAGGAAAGCAAGGAAAGGAGACTGCGTGAAGCCGAT
GGCAGACATCATCCCAACAATGCTAATACACTTACTTTGCAGGCGGGCATACGAGAGGTT
CAGGATGTTAGTCCCGAATTGAAGCGCTCAATCTCTGGGAATTTGGTTCCGAATGAATAC
GAAGAATCTGAACTGGTATCAATGGATGACGAGCCAGAACATAGGCGTCGGCACAGTATC
TTCGGTCAACTAAGATCGTTAGCTAGTCCTGGCACTCCGGTGATGACTTCACGGAGACCG
CTCACTGTATCCGATAATACTCCAGCTGTAGGACATCGCAAACATGAGCAAAATTCTGAT
CAAAACCCACTTGTCAATCGACTTACACCACAACAGCCCTTTCCCAATGCTACTCCTAGT
CATGCTCAGGCAACAGAGAAGTCGGTCAATCGGAGCTTGGATGGCATCCATACAATGCCA
AGAGATGCAAACATCGGCAGACACCACGGATCCATTGATGACTTCAGTCGCTACCATAAG
AGTCCCACGCAGCCGGACGGGTTCGTCGTGGAACCGACCTTCACGAGTCATAACACGAAC
CGAAACAACTCTGCGAATCCCACAGAGTGCATGGTACATAGACCTAATGGAAAATGTCAA
AAAATGCAACGGGCATACTCTGAGGAAGACAAAGGAGAAAGGGGTGACCGCAATTTCATT
GTACCCTATCTTTCGATGGATGGTGGAATGAATACCGTCCAACACTGGGGAAGAGATGCC
AGAGAACAGCGTCCTTGTTACTGTGGAAAGCCTCGCCGTCTCCTCAGGCCCTGCTCGAAA
CGCTCCCTCAATCTGGACTACACGCCATTGCAAAGAAATGAAACGCCTGTCAAATCTCCA
ACCACCGAAAATCTTTCCAAAAGAACACTGCAGTCTTGCGACAGGTCGTTTTCATTTCCT
GGAAAGAACCGGATCGATTCGTTCACCTCGATAGAAGACGAATGCCTTTTATCGCGGGAT
TCGCGGGACGCGGATTCAATTTTTTTTAATGAGATTGGCGGTAGTGGGATCAGCAGTTCT
GATTCAGATATGTTTGAGTCAGACTCTGGGAGTTTCGATGATGAATGTGGGTCGGTGAGG
ACTTACAGGACAGCGAATACTATTTCGCCGCAATGTGCCTTTAAAACTTTCTCGGAGGTG
AACTCGCAGCCCGGTTCGAAGTCCGACGTGGCGTCACGCCGGAAATTACCTCCGACTCCC
GAGGCACCTTCACGCATTTTCAGGTTGCCTATGATGAGTAAGAATTGGAGGAAATCTAGG
GAAAACATGCCTCTCTGTGACATCAAGACATCAGAAACAGCTCCATTAATTAATAGTCGC
AATGAAACAAGTTTTCATAGGAATTCCATACCACGGCACAAATTAACGAGACAGTTCTCG
ACCAACTACGACAACCGTCACCATGCCGATGACATGGACTACCGACGTGATAATGAAGTC
ATAATTTATAACAAAGGAGATGACGGTCGTGGTTGCAGCAAAACAAGAAGCTTTGTTCAA
ATTTTTCAGAGCCTTACGAATGGTGATTCTGACAATGACAGCACAAATGTTTGCCAACCG
AAATCATACTGTAGAAGTGACAGTGTATGGGACGAAGAAGAAGAAACGCCAATAAAACGG
TCACAGGTGGAAATTAGTCCCAGCGGTAGCAGAACTAGATCCCCCGTCCCTCGGAACGGT
CACGAGGGATGTATTGAACGTGATGAGGAAGCGGATCTTGCTAGCGAAATGATTGTTCCC
AACGTAAAATGACAGCGACCGACTCGCTCGAATCATGTGATGAAATCCTTATATAACGGA
TATACCGTTGGGTGTTGGGTGTTGGGAGTTTACTTCGTCTTGAAATGAACTGTGATGACA
AGGCAGTATACAAGCAACGAGGTTTTTTGAAATCCCCACATCGAGTTCAAATATACTTTT
CTTTTTGTTTCGAATTTTATGACAACGACGACGAAGGCTGGTCTTGAACACCTTCGATTG
TCGATTGTCAACCTCGCAAGAGAAAGTTTGCTTGGTCTGCTCTTCATGAGCTCTGTACAG
AAGTTTTTTTAGATCTCATTTGTATACGTACTGCAGTAGCATTGGTCTTCCCTTTTATAG
ATCATATACACAATTCAATGACAAACACATTTACACACACACACGCACAATTACAGGTAG
GAACTCCTTGCCTTTAACAGCCAACAAATTTGTTGAGAAGCATAGCAACAATATTTACCA
AACTTCGTAACATTTTTTGAATAAAATCCTTTACAGGTTTTCGTTTATGGGTGATCAAAA
TACTTGCATGCTTGAAAATTTTTCACAATGTCCAAAATTTTACCAAGTCCATGTAATAAT
GATGACCACCAAATAGGAAGGCTATTCTCTATCTGCCAAATCATTTCATATTGATTAGCT
CATTTTGGCAGGAGTGAGGAAACTTCTTATTTGGCACAATAGCAAGGGTATATTATCCTG
GGCACATCGCAGTACAGACCATACCATGCATTCAAATATCCATCCCATTGTTGCCATGAC
ATATAAATTCCATACAAACCATAAGTGTAGTCCGGAAACCTTTTAAGTCAGCATAAAATT
GATTTTTTCATCGTCCATCAGGATTATGTCAAGTTACATGTCAAAAGACACCGCACCTCA
CATATGGCCCTTCGATCTCATAGTTTTGGTAACACAAAATAATCGCTAGCGAATCATGCA
TAAAACTACAGTCGCGCGCTTTTTTATTTTCCGAAGTTGACAATGCCAAAAGTTGCATGC
CAAACCTGATACAGCACCTCACATAGTGCCCTCCAATGTCACAGCTCACTCCAATCTATT
TTCTGAAGTTGACAAAACCACAATACCACTTTTGAAAACGAATCACTGGTACTGCATGTC
ACCCATCATTGACCGGTCTAACAATACTTCGTCACCCAGAATTGATTACCAATTGATCGT
CTGACCGAAATCCGAATATATCAAGGTTTTCCTGAAAATGGATGACGTATGTACTCCTTC
TACCCGTGATAACAGTGACGATGTTCAGCATCTATTGCTATACGCTTACGTTTTTACAAA
GTATGCCATGGGCTGCTCAGCACATAGAAAATTTTCAACATTCTCTGAACAATTATCCCA
AATTTATATGTTGCAGACGATGACATTTTACTTATTTCCTCGGAAGTTAAGTTTATTTAT
CGGTTCAGTTCCTCGTTGTGAACGGCGGATAATGATCGTTGTCTATCGTGTATAACTTTC
TTCGCCAGCACATATTTATGATTTTCTATATACTGTGGTTCTGAAAAGAAATATTACATT
TTTCTCGCTCGTTAGTTACATGTTTTTTTTCTGGACAGAAGCTGGTTGTCGAGCCGTGTA
ACAGCTGGGGAATTTTCGGCTTTAAAATGTAGATGATGCATGAAGCCCTCAACCTTTGCT
ATACCGAAAATAATCGTACACACGCGATTTCACCTGGCGTGAAAAAACAGTCAATTTTCT
ATCAGCATTCATTCGAATAAACGTTTTGATTAGGCTTAAGCAATGCTCCGCAACCGGTGT
GCCGTGA
| Gene3D |
Volt_channel_dom_sf (IPR027359) - T[30-164] 1.3E-15 - T[414-533] 9.1E-30 - T[861-919] 2.4E-11 |
| PANTHER |
LVDCC_a1dsu (IPR005452) - T[51-861] 0.0 - T[861-1389] 0.0 |
| Pfam |
Ion_trans_dom (IPR005821) - T[75-286] 4.0E-47 - T[424-700] 4.7E-62 - T[743-856] 3.9E-18 - T[861-1063] 4.6E-51 |
| PRINTS |
VDCC_L_a1su (IPR005446) - T[115-130] 3.9E-5 - T[204-217] 3.9E-5 |
| PRINTS |
VDCCAlpha1 (IPR002077) - T[213-239] 4.1E-28 - T[691-711] 4.1E-28 - T[970-982] 4.1E-28 |
| Pfam |
GPHH_dom (IPR031649) - T[1065-1135] 2.9E-33 |
| Pfam |
VDCC_a1su_IQ (IPR014873) - T[1136-1209] 2.8E-30 |
| SMART |
VDCC_a1su_IQ (IPR014873) - T[1187-1221] 2.2E-14 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CAC1C_HUMAN | 60.725 % | 1468 | 0 |
| CAC1D_HUMAN | 63.474 % | 1432 | 0 |
| CAC1S_HUMAN | 58.563 % | 1439 | 0 |