- Transcript 'Moocul.CG.ELv1_2.S42...' >
- Transcript 'KH2012:KH.C6.67.v1.A...' >
- Transcript 'Harore.CG.MTP2014.S1...' >
- Transcript 'KH2012:KH.S521.4.v1....' >
- Transcript 'Harore.CG.MTP2014.S9...'
Transcript Model
Transcript Id
Harore.CG.MTP2014.S99.g14563.01.t
Possible name(s)
ELP2; NLE1; PAFAH1B1
Gene model
Location
S99 [206,857 / 209,335]
Amino acid sequence
Length: 825
>Harore.CG.MTP2014.S99.g14563.01.p
MESADTKPLVVSVKQEHVSCCANKCPNCVSWGQNGLVAIGACNTIVICKSYNADGHEKYQ
AISQTLNVHKGRVNCVKWAQKVNDESNVACPQSYLISGSSDCDLICWKVDHTGDVVEVKD
VLKSHKTPVTVVDSIIYGRTELSMLIVSAGSDSTVTIWKSSLPLSADNVSLSQTLDFGNA
LILSVAVHVLPCGTPIIACGRDNADISLYVLTRNFTLSREDFGLVSILSGHTGWIRGLDF
HYSDGIKNECILASCSQDSFIRLWKIKLKTPDDYGADENVLKPIENSFLINKDDQECKYA
IQLEAVLAGHEGWVYSVQWMKKDNSNNVDSNNSRLLSASMDKSIIIWGTDETTGLWVEIV
RFGELGGNTLGFYGAQFNYCGSEILAHSFNGALHFWKEFDNGESGTSWKPGVTVSGHSGP
VLDLCWEPKQGRYLLTTSMDQTTRLIAQWVTKSHKSWHEVARPQIHGYDMKCLSMIDSLK
FISGADEKVLRVFEASKTLLATLKSVSCCDVGDMDMAPESAVVPALGLSNKAVYGQKEVT
NGGRIENSSESKISSVKLSRPPTEEYLLQNTLWPETHKLYHHVYELFCVSSNADGTLVAT
AAKASKPEHAEIALWCTKSWKKISLLKGHTLTVTDMKFSTDGKFLLSVSRDRTWVLHRIQ
CGSECSYQANLFARSDKRTCHNRIIWSCSWSHDNKIFCTSSRDKKIMFWKVNYVTESDEF
VNREELVSRVAVKDTEESVTAVAFAVDFLRTYKYILCVGKQSGCLELYSFNCDSSKCELM
QVLCRDLSHSLAVKRLQWRPNNEEGFCLASCGDDHMVKMFTVKVQ
Nucleotide sequence
Length: 2,478
>Harore.CG.MTP2014.S99.g14563.01.t
ATGGAAAGCGCCGATACAAAGCCATTAGTTGTATCAGTTAAACAAGAGCATGTCTCTTGT
TGCGCAAACAAGTGTCCTAATTGCGTGTCTTGGGGCCAGAACGGTCTTGTAGCGATCGGT
GCATGCAACACAATTGTAATTTGCAAATCATACAACGCCGATGGCCATGAAAAATATCAA
GCAATATCTCAGACATTAAATGTACACAAAGGACGTGTTAATTGCGTTAAATGGGCACAG
AAAGTGAACGACGAAAGTAATGTAGCATGTCCTCAGTCCTATTTGATTTCTGGTTCATCA
GATTGCGACCTTATATGTTGGAAGGTTGACCATACAGGTGACGTTGTTGAGGTCAAAGAC
GTTTTGAAGAGCCATAAAACACCTGTTACTGTCGTTGATTCTATTATATATGGTAGAACT
GAACTTAGTATGTTGATAGTGTCTGCAGGATCGGATTCCACAGTAACTATTTGGAAAAGC
TCTCTACCCTTATCTGCTGACAATGTTTCTCTCTCACAAACTTTGGATTTCGGTAACGCG
TTGATTCTATCCGTTGCAGTACACGTTCTGCCGTGCGGCACACCGATTATTGCCTGCGGA
CGAGACAACGCAGACATTTCTTTATATGTGCTGACAAGAAATTTCACCCTATCTAGAGAA
GATTTTGGTTTAGTTTCCATCTTGTCAGGTCATACTGGGTGGATAAGAGGCCTTGATTTC
CATTACTCTGATGGAATTAAGAATGAATGTATATTAGCAAGTTGTTCTCAGGATTCCTTT
ATCAGGCTATGGAAAATCAAACTAAAAACTCCTGATGATTATGGTGCTGATGAAAATGTT
TTAAAACCAATTGAAAATTCTTTTCTAATTAATAAAGATGACCAGGAGTGCAAATATGCT
ATACAGTTGGAAGCTGTGCTTGCTGGTCATGAGGGATGGGTTTATAGCGTCCAGTGGATG
AAAAAAGATAACAGTAATAATGTGGATTCCAATAACTCCAGACTGCTATCTGCATCTATG
GATAAATCAATTATTATCTGGGGTACAGATGAAACTACTGGTCTCTGGGTGGAAATTGTA
AGGTTTGGTGAACTGGGAGGAAACACACTTGGTTTTTATGGGGCTCAGTTCAACTATTGT
GGTAGCGAAATCCTTGCACATAGTTTCAACGGCGCCCTTCATTTCTGGAAAGAATTCGAC
AATGGTGAGTCTGGAACTTCATGGAAGCCTGGGGTCACAGTTAGTGGGCACTCTGGACCA
GTTTTAGATCTTTGCTGGGAGCCAAAACAGGGTAGATATCTTCTCACTACAAGCATGGAC
CAAACCACTAGACTGATTGCGCAATGGGTAACAAAATCACATAAATCATGGCATGAAGTG
GCCAGACCACAAATCCATGGATACGATATGAAATGTTTGTCCATGATTGACAGTCTAAAA
TTCATTTCTGGTGCAGATGAAAAAGTTCTTCGTGTTTTTGAAGCCTCAAAAACTCTGCTC
GCAACCTTGAAAAGTGTTTCTTGTTGTGATGTAGGTGATATGGATATGGCTCCAGAAAGT
GCCGTTGTCCCTGCACTTGGACTTAGCAACAAGGCCGTATATGGTCAAAAAGAAGTGACA
AACGGTGGGAGAATTGAAAATTCTTCCGAAAGCAAAATCTCGTCTGTCAAATTGAGTCGA
CCACCAACCGAAGAGTATTTATTGCAAAATACATTATGGCCTGAAACACATAAGCTCTAT
CACCACGTTTATGAACTGTTCTGCGTATCTTCTAATGCAGACGGTACGTTAGTAGCCACT
GCTGCCAAGGCATCGAAGCCTGAGCACGCGGAAATCGCATTGTGGTGTACAAAGTCTTGG
AAGAAAATTTCTCTCTTAAAAGGGCACACATTAACTGTTACCGATATGAAATTTAGTACC
GATGGAAAATTTCTTCTTTCAGTGTCCAGAGATAGAACTTGGGTCTTGCATCGTATTCAG
TGCGGCTCAGAATGCAGCTACCAAGCAAATTTGTTCGCAAGGTCGGACAAGCGAACATGC
CATAATAGAATCATTTGGTCTTGCTCATGGAGTCATGACAACAAAATTTTCTGTACGTCT
TCACGAGATAAAAAGATAATGTTTTGGAAAGTCAATTATGTAACAGAATCTGATGAATTT
GTCAACAGAGAGGAGCTTGTTTCCCGAGTAGCCGTTAAAGACACAGAAGAATCCGTAACA
GCTGTGGCTTTTGCAGTTGATTTTCTGCGAACTTACAAATATATTCTATGTGTTGGTAAA
CAAAGTGGCTGCTTGGAATTGTATTCCTTCAACTGTGATTCTTCAAAATGTGAGTTAATG
CAAGTTCTATGCCGAGATTTATCACATTCACTTGCTGTGAAACGATTGCAATGGAGACCT
AACAATGAAGAGGGCTTTTGCTTAGCGTCTTGTGGAGATGATCATATGGTGAAAATGTTT
ACTGTAAAGGTGCAATGA
| Gene3D |
WD40/YVTN_repeat-like_dom_sf (IPR015943) - T[3-162] 1.2E-12 - T[170-286] 3.2E-9 - T[287-403] 9.0E-14 - T[404-552] 3.3E-10 - T[554-670] 3.4E-13 - T[671-723] 3.4E-6 - T[724-824] 1.8E-7 |
| PANTHER |
Elp2 (IPR037289) - T[15-824] 1.2E-260 |
| SUPERFAMILY |
WD40_repeat_dom_sf (IPR036322) - T[23-159] 5.31E-7 - T[121-268] 1.14E-30 - T[301-494] 1.14E-30 - T[573-823] 8.06E-27 |
| SMART |
WD40_repeat (IPR001680) - T[59-108] 0.022 - T[115-159] 11.0 - T[221-265] 1.3E-4 - T[300-348] 8.9E-6 - T[407-447] 0.0025 - T[456-494] 210.0 - T[572-616] 48.0 - T[619-658] 1.6E-5 - T[668-710] 9.5E-4 - T[780-821] 0.46 |
| Pfam |
WD40_repeat (IPR001680) - T[225-265] 0.0049 - T[305-347] 0.03 - T[621-653] 0.0073 - T[679-710] 0.0026 |
| ProSiteProfiles |
WD40_repeat (IPR001680) - T[228-267] 8.704 - T[626-653] 8.637 - T[678-712] 9.071 |
| ProSiteProfiles |
WD40_repeat_dom (IPR017986) - T[307-445] 9.652 - T[626-719] 11.339 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| ELP2_HUMAN | 39.859 % | 562 | 0 |