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TRANSCRIPT CARD

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  1. Transcript 'Harore.CG.MTP2014.S9...'

Transcript Model

Transcript Id

Harore.CG.MTP2014.S9.g15665.01.t

Possible name(s)

LPP; TRIP6; ZYX

Gene model

Harore.CG.MTP2014.S9.g15665

Location

S9 [592,198 / 594,033]

Sequences

Amino acid sequence

Length: 248

>Harore.CG.MTP2014.S9.g15665.01.p
MPNQSISRSTPLAVSTSTKGVKKQRSPEEELEFYTQSLIDNMNSPPDKEMYGYCGKCNDV
VEGEKTGCSAMEKIFHINCFGCTTCGRLLHGDEFYVVDQEPFCEKCYLDSLEKCTVCSDV
IKVRILRATGKPYHPECFRCVVCSKCLDGIPFTVDVTNQIYCVDDFQKKFAPRCSVCHQS
ILPEQGQEETVRIIALDRNFHVDCYKCEKCGVKLTSDKDGKKCFPLDGHVLCGDCNSAMV
QELSQAIQ

Nucleotide sequence

Length: 1,368

>Harore.CG.MTP2014.S9.g15665.01.t
CGCCTCTGCTCTCACGAATTGACGTATATGCCTGTTTGAATCCAGTTTACATCAAATATT
ATATTGTAATAACATTAATATATAGTGAACTACCATACTGATAGCAAACTAGAACTTGAC
TGTAAGATGCCGAACCAATCAATATCCCGATCAACTCCATTGGCAGTATCCACGTCGACC
AAAGGTGTTAAAAAACAACGAAGTCCGGAAGAAGAATTGGAGTTTTATACACAGTCGTTG
ATCGACAACATGAATAGTCCACCGGATAAGGAAATGTATGGTTATTGCGGTAAATGCAAT
GATGTTGTTGAAGGGGAAAAAACTGGATGTTCAGCAATGGAGAAGATATTTCATATTAAC
TGCTTTGGCTGTACAACCTGTGGTCGTTTGCTTCATGGCGATGAGTTTTATGTTGTTGAT
CAGGAGCCGTTTTGTGAAAAATGCTACTTGGATTCTTTAGAGAAATGTACAGTGTGTTCG
GATGTTATCAAAGTTCGAATTTTAAGAGCTACTGGTAAGCCTTATCATCCAGAGTGTTTC
AGATGCGTTGTCTGCAGTAAATGCCTGGATGGAATCCCTTTCACAGTCGATGTGACTAAT
CAAATATATTGTGTTGATGATTTCCAAAAGAAATTTGCACCCCGATGTTCCGTCTGTCAT
CAATCCATATTGCCAGAGCAGGGCCAAGAGGAAACAGTTCGTATCATTGCTCTTGACAGA
AACTTCCATGTGGATTGCTACAAATGCGAAAAGTGTGGGGTGAAGCTGACTTCGGACAAA
GATGGAAAGAAATGCTTTCCGCTAGACGGGCATGTCCTGTGTGGGGATTGCAATAGCGCT
ATGGTGCAAGAATTAAGTCAAGCGATCCAGTGAAAGATATCTCATACGCAAATAACTAAA
AATATTTTTTCTACATTCGCTATACACTGCTAAATTAATTGATACTCGCTTATTGTGCCT
TGCTGTCGATGAAGTGTGGTAGATTTTCTATTGTTTGAAGACGTATGTTGATAGTACATC
AGTAGTACATGTTCATTCACATTTCAAACTCTCTCCTGTCATCGAGTGGAAACAAAAGTT
TGGAGTTGAAGTAATATGCAGTACATATAATAGAATCAATGTACAGTAATGTATTCTTGC
CAATGCCACAGCATTAGTGCTTAATACTTTTATTTTAGATGTACAGTCATGACTACTATT
CAGTTTTGTTTTGGGTTTTCAATAACCCAATACTATCTTGTAGTACTAACTATAAGTACA
ATTGCTACTAATTTTTTATATCAAATGACCAATACCTTTTATTAGTTCAAAGTTTGTACT
GAACAGTACAGTATTTCCAGTTTATATGTACACATAATAAAAGACACC

InterProScan

ProSiteProfiles
Znf_LIM (IPR001781) - T[52-111] 10.187 - T[112-172] 13.078 - T[173-242] 10.088
SMART
Znf_LIM (IPR001781) - T[53-106] 9.4E-11 - T[113-165] 2.0E-14 - T[173-235] 9.5E-14
Pfam
Znf_LIM (IPR001781) - T[54-109] 1.2E-12 - T[114-170] 1.3E-10 - T[174-236] 4.1E-7

Best Blast Hits in UniProt
Protein Name Identity Bit Score e-value
TRIP6_HUMAN 53.744 % 277 1.6E-91
LPP_HUMAN 55.505 % 275 4.64E-89
ZYX_HUMAN 48.837 % 223 1.0E-69