- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g54100.01.t
Possible name(s)
CDH2; CDH4; CDH7
Gene model
Location
chrUn [329,245,308 / 329,247,654]
Amino acid sequence
Length: 781
>Boschl.CG.Botznik2013.chrUn.g54100.01.p
MGPRAFLIISTAVLLAVHYAEGQWTYPEQRIAEGPLYEKAKVVKIHSEDPTTVTYDISGD
FGTKFDIDHESGQIWQVEAVDRETKDRYTITATSADANGNPTEDPVRFDIVVTDINDNYP
VFVESSLTGSVEELHDTGPDSTPFMQVKATDEDLGFNAEIRFKIEDGSDTPESPSGNRFI
IDPVSGWVRVNGDDLNYESNPVVRFNVIAVDNNGGPGSNEKKSEVVVSVTDSNDHAPEFG
PLTAKSLSEISELGTPLYNMYATDTDEGVNKKVYFEILDGNTGGAFTIVSKPSATGQSLG
ELQLVKPLDFESGIVSYKLKIKAYNKDASNAADVAYATESTLSITVIDANEPPIFRDTPY
NYRRTEGPAPAEPIPIIQVHAEDIDFNKNQTVTYSLEDPENWFDIVATTGQITLTGALDR
EATANGVYHLKVIATDNYDHGNPASGSEEVAITIEDINDNPPAPDWGQEGATAYVCEKPR
NRTARHIKATDPDSAVNGPPFTFRLDDSVDKTKWSFEAVDDDSVNLIAEFSDYGLSSGSA
TVSLIFTVTDGGTVSQTGTATLTATICKCGDDGEFTCKDATAAAFPYAIIIAVIAVILLI
AILVFAVVTYKRRQAAMILKEPFFDDEDDIRETVQVYQEEGGEEDQDTYDLSALRGPLLE
DPNQPIRKTQMPLIQQAPRPRRPNAPDDITNIIGEAKDAADEDPSAPPFDSLLVFDYEGA
GSDAGSLSSIXQPLLMARWIMITSTIGARGSIVSPVCITMGQSLIKMGCTVIWSQMQGRD
V
Nucleotide sequence
Length: 2,346
>Boschl.CG.Botznik2013.chrUn.g54100.01.t
TATGGGGCCGCGAGCATTCCTCATAATTAGCACTGCGGTGCTGCTTGCCGTTCACTATGC
AGAAGGACAATGGACTTATCCTGAACAAAGAATCGCAGAGGGACCCCTTTACGAGAAGGC
TAAAGTGGTAAAGATTCATTCAGAGGATCCTACAACTGTGACATATGACATATCTGGAGA
TTTTGGTACCAAATTCGATATTGATCACGAATCTGGACAGATCTGGCAGGTGGAAGCAGT
GGATAGGGAAACCAAAGACAGGTATACGATTACTGCCACATCCGCCGATGCAAATGGAAA
TCCAACTGAGGATCCTGTCCGATTCGATATCGTCGTTACTGATATAAATGACAATTATCC
TGTATTCGTGGAGTCCAGTTTGACCGGAAGCGTAGAAGAGCTCCACGATACAGGTCCGGA
TTCTACGCCTTTCATGCAAGTAAAAGCCACGGACGAAGATTTAGGGTTTAATGCTGAGAT
CCGATTTAAAATCGAAGATGGTAGTGATACTCCAGAATCTCCATCCGGAAATAGATTCAT
AATTGACCCAGTCTCGGGATGGGTGCGAGTCAACGGCGACGATCTCAACTATGAATCCAA
CCCGGTGGTGAGATTCAATGTGATTGCAGTTGATAACAATGGTGGTCCCGGTTCTAATGA
AAAAAAAAGCGAAGTCGTAGTCTCTGTCACAGACTCCAATGACCACGCCCCTGAATTCGG
TCCTCTAACGGCTAAATCACTGTCGGAAATATCAGAACTTGGTACCCCACTGTATAATAT
GTACGCTACTGACACTGACGAGGGTGTCAATAAAAAGGTTTACTTTGAAATACTGGACGG
GAACACGGGTGGAGCATTCACGATTGTCTCGAAGCCGTCAGCAACCGGTCAAAGTCTCGG
AGAACTGCAACTCGTCAAACCTTTAGACTTTGAAAGTGGTATCGTTAGCTACAAATTGAA
AATTAAAGCGTATAATAAGGATGCGTCAAATGCAGCCGATGTGGCGTATGCTACCGAATC
AACTTTATCGATCACAGTGATAGATGCAAACGAACCCCCTATTTTTAGAGACACTCCTTA
CAATTATAGAAGAACAGAAGGACCTGCCCCCGCCGAGCCTATTCCCATCATACAAGTGCA
CGCGGAAGACATCGATTTTAACAAAAATCAGACCGTCACGTATAGTTTGGAGGATCCTGA
GAATTGGTTTGATATAGTTGCTACAACAGGGCAAATTACTCTGACAGGTGCTCTAGATCG
TGAAGCCACCGCAAACGGTGTGTACCATCTTAAAGTCATAGCCACTGATAATTACGACCA
TGGAAATCCAGCGAGTGGCAGTGAGGAAGTAGCTATTACGATCGAAGACATCAATGATAA
CCCGCCTGCGCCTGATTGGGGTCAAGAAGGTGCTACTGCGTATGTTTGCGAGAAGCCACG
AAACAGAACAGCGAGACATATCAAGGCTACTGACCCGGACTCGGCCGTAAATGGACCCCC
GTTCACGTTCCGCCTCGATGACTCTGTGGATAAAACCAAGTGGAGTTTTGAAGCAGTCGA
CGATGACAGTGTAAACCTAATCGCAGAGTTTTCCGACTATGGTTTGAGTTCGGGATCAGC
TACTGTTTCACTAATATTCACAGTTACGGATGGCGGGACGGTTTCACAGACAGGCACGGC
CACTTTGACTGCGACTATATGCAAGTGTGGTGACGACGGTGAATTTACTTGCAAAGACGC
GACTGCAGCTGCATTCCCGTACGCGATTATTATCGCAGTTATAGCGGTGATCTTACTAAT
CGCTATTCTAGTATTCGCAGTAGTCACATACAAGAGACGTCAAGCGGCTATGATTTTGAA
AGAGCCTTTCTTTGATGATGAAGATGATATTCGAGAGACAGTTCAAGTGTACCAAGAGGA
AGGTGGCGAGGAAGACCAAGACACGTACGATTTAAGCGCTCTACGCGGGCCTTTGTTGGA
AGACCCAAATCAACCCATCAGAAAAACACAAATGCCGTTAATCCAACAAGCACCAAGGCC
ACGGCGCCCTAACGCGCCTGATGATATCACAAACATCATCGGTGAAGCCAAGGATGCCGC
GGATGAGGATCCTAGCGCTCCTCCTTTTGACTCGTTGCTCGTGTTCGACTATGAAGGCGC
TGGTTCAGATGCGGGATCATTATCTTCTATCANCCAGCCACTACTGATGGCTCGGTGGAT
TATGATTACCTCAACGATTGGGGCCCGCGGTTCAATCGTCTCGCCGGTATGTATAACGAT
GGGTCAGAGTCTGATTAAAATGGGATGTACGGTGATTTGGAGCCAGATGCAGGGCCGAGA
TGTTTG
| SUPERFAMILY |
Cadherin-like (IPR015919) - T[37-122] 9.42E-12 - T[116-239] 2.86E-19 - T[233-348] 8.57E-12 - T[351-462] 6.81E-20 - T[457-567] 8.9E-8 |
| SMART |
Cadherin (IPR002126) - T[45-120] 6.2E-12 - T[147-237] 3.4E-21 - T[260-354] 1.7E-10 - T[379-462] 2.7E-22 - T[487-574] 0.21 |
| Pfam |
Cadherin (IPR002126) - T[48-112] 5.1E-7 - T[137-229] 1.2E-11 - T[247-333] 9.4E-11 - T[375-455] 7.3E-14 |
| PRINTS |
Cadherin (IPR002126) - T[63-82] 2.5E-10 - T[238-267] 2.5E-10 - T[316-328] 2.5E-10 - T[335-354] 2.5E-10 - T[446-463] 2.5E-10 |
| ProSitePatterns |
Cadherin_CS (IPR020894) - T[227-237] . - T[452-462] . |
| Pfam |
Cadherin_cytoplasmic-dom (IPR000233) - T[621-731] 3.1E-25 |
| Gene3D |
Catenin_binding_dom_sf (IPR027397) - T[666-720] 3.3E-17 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| CADH4_HUMAN | 33.106 % | 273 | 2.66E-79 |
| CADH2_HUMAN | 32.606 % | 255 | 7.42E-73 |
| CADH7_HUMAN | 32.005 % | 248 | 4.02E-71 |