- Transcript 'Boschl.CG.Botznik201...'
Transcript Model
Transcript Id
Boschl.CG.Botznik2013.chrUn.g60926.01.t
Possible name(s)
RPAP3; SPAG1; TOMM34
Gene model
Location
chrUn [357,421,263 / 357,423,386]
Amino acid sequence
Length: 660
>Boschl.CG.Botznik2013.chrUn.g60926.01.p
VKTHAEKSEVVTKAKETNESKPKAEEVSSISTASPEFPVKTAELKTKAGELFKSGRYGDA
GEHYTKAIVSMSSYVKPGGTDPGHTAALAVLHNNRAACRLKQGDDRACVADCNEVLKVKK
WDAKALMRRAMAYENMEKYAKAWADYQTAYSMDRGNVLAQNGANRVGQHLRDIHGSRWRE
KVPKIETPPMPALGDMHKYAIPDNKEVPKPVNISDVRKDGESTVAPAENLRAPSGIIKEG
KKQKTKVDTVAPAEKPSVPPELPKDGKNQKMNSDDVNAVAPTENLGTPSEFPKEGKKQKS
KKRNRPKSPRKVEVPTPTKEEAAIESKKTKIRQDLFQKLKADGNENVKQGKYNDAVDCYT
RCLTLCPKEPASYTNRALCFLKLKKHVSAVNDCTEAIKLDPVNTKAYYRRALARKAEGYH
GDARRDITKLLEIDPGNKAGHAELEALKKLMGDTKKEVKPVHKKRMVIEEVDSSESSDED
NESAKSAKVTDNELTKAADNKSARSAEVTDKVLAKSVEITDNESAKSVRARLSADRQLTP
YEFGHLWSAIASKKNHDEYKALLGRIRPEQLPALLSNKIDDHVIRMVSQVARERATKSGD
CRYAYDLLRCLTKADRFGVVAMFLSDSDKRILKDTFDAIRGDDSGVVTQDDISELEKKYA
Nucleotide sequence
Length: 1,983
>Boschl.CG.Botznik2013.chrUn.g60926.01.t
TAAAAACGCATGCGGAAAAATCTGAAGTTGTGACGAAAGCTAAAGAAACAAACGAATCTA
AACCGAAAGCGGAAGAGGTCTCGTCTATTTCTACTGCGTCTCCTGAGTTCCCCGTCAAAA
CTGCAGAGCTAAAAACGAAGGCTGGTGAACTGTTCAAGTCCGGCAGATATGGTGACGCAG
GGGAACACTACACAAAAGCGATCGTTAGCATGTCGTCGTATGTAAAACCGGGCGGCACAG
ACCCGGGACACACCGCGGCACTGGCAGTACTGCACAACAACCGGGCCGCGTGCAGGTTAA
AGCAAGGAGATGACAGGGCTTGCGTTGCTGATTGCAACGAAGTGTTGAAAGTGAAAAAGT
GGGACGCGAAAGCCTTGATGAGGCGCGCGATGGCGTATGAAAACATGGAGAAGTACGCCA
AGGCATGGGCCGACTATCAGACCGCGTACAGCATGGACAGAGGCAACGTGCTGGCCCAAA
ATGGCGCCAACCGCGTCGGACAGCATCTGCGTGATATACACGGCAGTCGGTGGAGGGAGA
AAGTTCCTAAAATTGAAACGCCCCCAATGCCTGCTTTGGGTGATATGCACAAATATGCAA
TACCTGACAATAAAGAGGTGCCGAAACCTGTAAATATTTCCGATGTTCGGAAGGATGGGG
AGAGTACAGTAGCTCCCGCGGAAAATCTCAGGGCGCCGTCAGGAATTATCAAAGAGGGTA
AGAAGCAGAAAACCAAAGTCGACACCGTAGCTCCCGCGGAAAAACCCAGTGTGCCACCGG
AACTTCCCAAAGATGGTAAAAATCAGAAAATGAACAGCGATGATGTGAACGCCGTCGCTC
CCACGGAAAATCTCGGCACGCCATCAGAATTTCCAAAAGAGGGCAAGAAGCAGAAGAGCA
AAAAACGGAACAGGCCTAAATCGCCCCGAAAAGTGGAGGTTCCGACTCCGACAAAGGAGG
AAGCCGCAATTGAAAGCAAAAAAACAAAAATACGGCAGGACCTGTTCCAAAAACTGAAAG
CAGACGGTAACGAGAACGTAAAGCAAGGCAAGTACAATGATGCCGTCGATTGCTACACCA
GATGCTTGACGCTGTGTCCGAAAGAACCGGCCAGTTACACTAACCGGGCGCTGTGCTTTT
TGAAACTGAAAAAACACGTGTCCGCGGTCAACGACTGCACAGAGGCTATAAAGCTAGACC
CGGTCAACACAAAGGCGTATTACAGACGCGCTCTAGCGCGTAAAGCAGAGGGCTACCACG
GTGACGCGCGTCGTGATATTACCAAACTGCTAGAGATCGATCCGGGCAATAAAGCAGGAC
ATGCGGAGCTGGAGGCTTTAAAAAAATTGATGGGCGATACCAAGAAGGAAGTGAAACCGG
TGCATAAAAAGCGGATGGTCATCGAGGAGGTGGACAGCAGTGAGAGCAGCGATGAGGGTA
ACGAGTCTGCAAAATCTGCCAAAGTCACTGATAACGAGTTGACCAAAGCTGCAGATAACA
AGTCTGCAAGATCTGCTGAAGTCACTGATAAAGTGTTAGCAAAATCTGTTGAAATCACCG
ATAACGAGTCGGCGAAATCGGTCAGAGCCAGACTTTCGGCTGACAGGCAGTTGACGCCTT
ACGAGTTCGGGCACTTGTGGAGCGCGATTGCCAGCAAGAAGAACCATGACGAATACAAGG
CCCTGCTGGGTAGAATAAGGCCCGAACAGTTACCGGCGCTGTTGAGTAACAAAATCGACG
ACCACGTGATACGGATGGTGTCGCAGGTGGCTAGGGAGCGTGCGACGAAAAGCGGGGATT
GCCGGTACGCGTACGATTTATTGCGTTGCTTGACCAAAGCAGACCGATTCGGAGTCGTGG
CCATGTTCTTGTCGGATTCGGATAAAAGAATCCTGAAAGATACGTTCGACGCTATTCGTG
GTGACGATTCCGGCGTTGTCACTCAGGACGATATTAGCGAATTGGAAAAGAAATATGCGT
AAT
| SUPERFAMILY |
TPR-like_helical_dom_sf (IPR011990) - T[38-173] 2.23E-22 - T[330-461] 5.84E-31 |
| Gene3D |
TPR-like_helical_dom_sf (IPR011990) - T[39-172] 2.8E-27 - T[325-488] 7.1E-39 |
| SMART |
TPR_repeat (IPR019734) - T[41-74] 330.0 - T[89-122] 16.0 - T[123-156] 0.0051 - T[336-369] 0.083 - T[370-403] 3.7E-5 - T[404-437] 1.7 |
| ProSiteProfiles |
TPR-contain_dom (IPR013026) - T[89-156] 9.261 - T[336-437] 19.501 |
| Pfam |
TPR_repeat (IPR019734) - T[123-154] 0.049 - T[372-402] 0.21 |
| ProSiteProfiles |
TPR_repeat (IPR019734) - T[123-156] 8.083 - T[336-369] 7.877 - T[370-403] 7.847 - T[404-437] 7.493 |
| Pfam |
RPAP3-like_C (IPR025986) - T[539-629] 2.8E-15 |
| Protein Name | Identity | Bit Score | e-value |
|---|---|---|---|
| RPAP3_HUMAN | 25.74 % | 104 | 2.26E-23 |
| SPAG1_HUMAN | 30.061 % | 137 | 1.57E-33 |
| TOM34_HUMAN | 35.795 % | 115 | 2.85E-28 |